Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_J07
(498 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta (Rab... 126 3e-29
sp|P50397|GDIB_BOVIN Rab GDP dissociation inhibitor beta (R... 126 3e-29
sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Ra... 125 4e-29
sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (... 125 4e-29
sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (... 125 4e-29
sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (... 125 6e-29
sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (R... 124 1e-28
sp|Q5RCE1|GDIB_PONPY Rab GDP dissociation inhibitor beta (R... 124 1e-28
sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (... 124 2e-28
sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (... 124 2e-28
>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 126 bits (316), Expect = 3e-29
Identities = 67/153 (43%), Positives = 93/153 (60%)
Frame = +2
Query: 2 SYVYKQGSIFKVPCDEKEALATSLMGMFEKRRFRKLLMWAMSFDINKPETYKNVVTNPRT 181
S+VYK G I+KVP E EALA+SLMG+FEKRRFRK L++ +FD N P T++ V +P+
Sbjct: 108 SFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGV--DPKK 165
Query: 182 ETIRKIYDHFGVDRNTQDFIGHAICVYLNDDYIDKSSAEEAIKRMQLYSNSLARXXXXXX 361
+R++Y F + ++ DF GHA+ +Y DDY+D+ E I R++LYS SLAR
Sbjct: 166 TAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCC-ETINRIKLYSESLARYGKSPY 224
Query: 362 XXXXXXXXXXXXXFARLSAVFGGYVHAEQAIRE 460
FARLSA++GG + I E
Sbjct: 225 LYPLYGLGELPQGFARLSAIYGGTYMLNKPIEE 257
Score = 33.5 bits (75), Expect = 0.29
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 426 GGTYMLNKQFEKIVYDESGKVIGV 497
GGTYMLNK E+I+ ++GKVIGV
Sbjct: 246 GGTYMLNKPIEEIIV-QNGKVIGV 268
>sp|P50397|GDIB_BOVIN Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 126 bits (316), Expect = 3e-29
Identities = 66/153 (43%), Positives = 94/153 (61%)
Frame = +2
Query: 2 SYVYKQGSIFKVPCDEKEALATSLMGMFEKRRFRKLLMWAMSFDINKPETYKNVVTNPRT 181
S+VYK G I+KVP E EALA+SLMG+FEKRRFRK L++ +FD N P T++ + +P+
Sbjct: 108 SFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGI--DPKK 165
Query: 182 ETIRKIYDHFGVDRNTQDFIGHAICVYLNDDYIDKSSAEEAIKRMQLYSNSLARXXXXXX 361
++R++Y F + ++ DF GHA+ +Y DDY+D+ E I R++LYS SLAR
Sbjct: 166 TSMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCC-ETINRIKLYSESLARYGKSPY 224
Query: 362 XXXXXXXXXXXXXFARLSAVFGGYVHAEQAIRE 460
FARLSA++GG + I E
Sbjct: 225 LYPLYGLGELPQGFARLSAIYGGTYMLNKPIEE 257
Score = 33.5 bits (75), Expect = 0.29
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 426 GGTYMLNKQFEKIVYDESGKVIGV 497
GGTYMLNK E+I+ ++GKVIGV
Sbjct: 246 GGTYMLNKPIEEIIM-QNGKVIGV 268
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 125 bits (315), Expect = 4e-29
Identities = 66/143 (46%), Positives = 92/143 (64%)
Frame = +2
Query: 2 SYVYKQGSIFKVPCDEKEALATSLMGMFEKRRFRKLLMWAMSFDINKPETYKNVVTNPRT 181
S+VYK G I+KVP E EALA++LMGMFEKRRFRK L++ +FD N P+T++ V +P+T
Sbjct: 108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGV--DPQT 165
Query: 182 ETIRKIYDHFGVDRNTQDFIGHAICVYLNDDYIDKSSAEEAIKRMQLYSNSLARXXXXXX 361
++R +Y F + ++ DF GHA+ +Y DDY+D+ E I R++LYS SLAR
Sbjct: 166 TSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCL-ETINRIKLYSESLARYGKSPY 224
Query: 362 XXXXXXXXXXXXXFARLSAVFGG 430
FARLSA++GG
Sbjct: 225 LYPLYGLGELPQGFARLSAIYGG 247
Score = 32.0 bits (71), Expect = 0.83
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 426 GGTYMLNKQFEKIVYDESGKVIGV 497
GGTYMLNK + I+ E+GKV+GV
Sbjct: 246 GGTYMLNKPVDDIIM-ENGKVVGV 268
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 125 bits (315), Expect = 4e-29
Identities = 66/143 (46%), Positives = 92/143 (64%)
Frame = +2
Query: 2 SYVYKQGSIFKVPCDEKEALATSLMGMFEKRRFRKLLMWAMSFDINKPETYKNVVTNPRT 181
S+VYK G I+KVP E EALA++LMGMFEKRRFRK L++ +FD N P+T++ V +P+T
Sbjct: 108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGV--DPQT 165
Query: 182 ETIRKIYDHFGVDRNTQDFIGHAICVYLNDDYIDKSSAEEAIKRMQLYSNSLARXXXXXX 361
++R +Y F + ++ DF GHA+ +Y DDY+D+ E I R++LYS SLAR
Sbjct: 166 TSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCL-ETINRIKLYSESLARYGKSPY 224
Query: 362 XXXXXXXXXXXXXFARLSAVFGG 430
FARLSA++GG
Sbjct: 225 LYPLYGLGELPQGFARLSAIYGG 247
Score = 32.0 bits (71), Expect = 0.83
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 426 GGTYMLNKQFEKIVYDESGKVIGV 497
GGTYMLNK + I+ E+GKV+GV
Sbjct: 246 GGTYMLNKPVDDIIM-ENGKVVGV 268
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 125 bits (315), Expect = 4e-29
Identities = 66/143 (46%), Positives = 92/143 (64%)
Frame = +2
Query: 2 SYVYKQGSIFKVPCDEKEALATSLMGMFEKRRFRKLLMWAMSFDINKPETYKNVVTNPRT 181
S+VYK G I+KVP E EALA++LMGMFEKRRFRK L++ +FD N P+T++ V +P+T
Sbjct: 108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGV--DPQT 165
Query: 182 ETIRKIYDHFGVDRNTQDFIGHAICVYLNDDYIDKSSAEEAIKRMQLYSNSLARXXXXXX 361
++R +Y F + ++ DF GHA+ +Y DDY+D+ E I R++LYS SLAR
Sbjct: 166 TSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCL-ETINRIKLYSESLARYGKSPY 224
Query: 362 XXXXXXXXXXXXXFARLSAVFGG 430
FARLSA++GG
Sbjct: 225 LYPLYGLGELPQGFARLSAIYGG 247
Score = 32.0 bits (71), Expect = 0.83
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 426 GGTYMLNKQFEKIVYDESGKVIGV 497
GGTYMLNK + I+ E+GKV+GV
Sbjct: 246 GGTYMLNKPVDDIIM-ENGKVVGV 268
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4)
(Oligophrenin-2)
Length = 447
Score = 125 bits (314), Expect = 6e-29
Identities = 65/143 (45%), Positives = 92/143 (64%)
Frame = +2
Query: 2 SYVYKQGSIFKVPCDEKEALATSLMGMFEKRRFRKLLMWAMSFDINKPETYKNVVTNPRT 181
S+VYK G I+KVP E EALA++LMGMFEKRRFRK L++ +FD N P+T++ V +P+T
Sbjct: 108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGV--DPQT 165
Query: 182 ETIRKIYDHFGVDRNTQDFIGHAICVYLNDDYIDKSSAEEAIKRMQLYSNSLARXXXXXX 361
++R +Y F + ++ DF GHA+ +Y DDY+D+ E + R++LYS SLAR
Sbjct: 166 TSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCL-ETVNRIKLYSESLARYGKSPY 224
Query: 362 XXXXXXXXXXXXXFARLSAVFGG 430
FARLSA++GG
Sbjct: 225 LYPLYGLGELPQGFARLSAIYGG 247
Score = 32.0 bits (71), Expect = 0.83
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 426 GGTYMLNKQFEKIVYDESGKVIGV 497
GGTYMLNK + I+ E+GKV+GV
Sbjct: 246 GGTYMLNKPVDDIIM-ENGKVVGV 268
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 124 bits (311), Expect = 1e-28
Identities = 66/153 (43%), Positives = 92/153 (60%)
Frame = +2
Query: 2 SYVYKQGSIFKVPCDEKEALATSLMGMFEKRRFRKLLMWAMSFDINKPETYKNVVTNPRT 181
S+VYK G I+KVP E EALA+SLMG+FEKRRFRK L++ +FD P T++ + +P+
Sbjct: 108 SFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGI--DPKK 165
Query: 182 ETIRKIYDHFGVDRNTQDFIGHAICVYLNDDYIDKSSAEEAIKRMQLYSNSLARXXXXXX 361
T+R +Y F + ++ DF GHA+ +Y DDY+D+ E I R++LYS SLAR
Sbjct: 166 TTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQ-PCYETINRIKLYSESLARYGKSPY 224
Query: 362 XXXXXXXXXXXXXFARLSAVFGGYVHAEQAIRE 460
FARLSA++GG + I E
Sbjct: 225 LYPLYGLGELPQGFARLSAIYGGTYMLNKPIEE 257
Score = 33.5 bits (75), Expect = 0.29
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 426 GGTYMLNKQFEKIVYDESGKVIGV 497
GGTYMLNK E+I+ ++GKVIGV
Sbjct: 246 GGTYMLNKPIEEIIV-QNGKVIGV 268
>sp|Q5RCE1|GDIB_PONPY Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 124 bits (311), Expect = 1e-28
Identities = 66/153 (43%), Positives = 92/153 (60%)
Frame = +2
Query: 2 SYVYKQGSIFKVPCDEKEALATSLMGMFEKRRFRKLLMWAMSFDINKPETYKNVVTNPRT 181
S+VYK G I+KVP E EALA+SLMG+FEKRRFRK L++ +FD P T++ + +P+
Sbjct: 108 SFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGI--DPKK 165
Query: 182 ETIRKIYDHFGVDRNTQDFIGHAICVYLNDDYIDKSSAEEAIKRMQLYSNSLARXXXXXX 361
T+R +Y F + ++ DF GHA+ +Y DDY+D+ E I R++LYS SLAR
Sbjct: 166 TTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQ-PCYETINRIKLYSESLARYGKSPY 224
Query: 362 XXXXXXXXXXXXXFARLSAVFGGYVHAEQAIRE 460
FARLSA++GG + I E
Sbjct: 225 LYPLYGLGELPQGFARLSAIYGGTYMLNKPIEE 257
Score = 33.5 bits (75), Expect = 0.29
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 426 GGTYMLNKQFEKIVYDESGKVIGV 497
GGTYMLNK E+I+ ++GKVIGV
Sbjct: 246 GGTYMLNKPIEEIIV-QNGKVIGV 268
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 124 bits (310), Expect = 2e-28
Identities = 65/143 (45%), Positives = 91/143 (63%)
Frame = +2
Query: 2 SYVYKQGSIFKVPCDEKEALATSLMGMFEKRRFRKLLMWAMSFDINKPETYKNVVTNPRT 181
S+VYK G I+KVP E EALA++LMGMFEKRRFRK L++ +FD N P+T++ V +P+
Sbjct: 108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGV--DPQN 165
Query: 182 ETIRKIYDHFGVDRNTQDFIGHAICVYLNDDYIDKSSAEEAIKRMQLYSNSLARXXXXXX 361
++R +Y F + ++ DF GHA+ +Y DDY+D+ E I R++LYS SLAR
Sbjct: 166 TSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCL-ETINRIKLYSESLARYGKSPY 224
Query: 362 XXXXXXXXXXXXXFARLSAVFGG 430
FARLSA++GG
Sbjct: 225 LYPLYGLGELPQGFARLSAIYGG 247
Score = 32.0 bits (71), Expect = 0.83
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 426 GGTYMLNKQFEKIVYDESGKVIGV 497
GGTYMLNK + I+ E+GKV+GV
Sbjct: 246 GGTYMLNKPVDDIIM-ENGKVVGV 268
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A
GDI)
Length = 447
Score = 124 bits (310), Expect = 2e-28
Identities = 65/143 (45%), Positives = 91/143 (63%)
Frame = +2
Query: 2 SYVYKQGSIFKVPCDEKEALATSLMGMFEKRRFRKLLMWAMSFDINKPETYKNVVTNPRT 181
S+VYK G I+KVP E EALA++LMGMFEKRRFRK L++ +FD N P+T++ V +P+
Sbjct: 108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGV--DPQN 165
Query: 182 ETIRKIYDHFGVDRNTQDFIGHAICVYLNDDYIDKSSAEEAIKRMQLYSNSLARXXXXXX 361
++R +Y F + ++ DF GHA+ +Y DDY+D+ E I R++LYS SLAR
Sbjct: 166 TSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCL-ETINRIKLYSESLARYGKSPY 224
Query: 362 XXXXXXXXXXXXXFARLSAVFGG 430
FARLSA++GG
Sbjct: 225 LYPLYGLGELPQGFARLSAIYGG 247
Score = 32.0 bits (71), Expect = 0.83
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 426 GGTYMLNKQFEKIVYDESGKVIGV 497
GGTYMLNK + I+ E+GKV+GV
Sbjct: 246 GGTYMLNKPVDDIIM-ENGKVVGV 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,261,683
Number of Sequences: 369166
Number of extensions: 1058982
Number of successful extensions: 2966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2921
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3119256630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)