Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_I23
(849 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BFR5|EFTU_MOUSE Elongation factor Tu, mitochondrial pr... 329 5e-90
sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial pr... 327 3e-89
sp|P49410|EFTU_BOVIN Elongation factor Tu, mitochondrial pr... 325 7e-89
sp|Q9Y700|EFTU_SCHPO Elongation factor Tu, mitochondrial pr... 321 1e-87
sp|P02992|EFTU_YEAST Elongation factor Tu, mitochondrial pr... 319 7e-87
sp|Q8KT95|EFTU_RICTY Elongation factor Tu (EF-Tu) 314 2e-85
sp|O50306|EFTU_BACST Elongation factor Tu (EF-Tu) 314 2e-85
sp|P48865|EFTU_RICPR Elongation factor Tu (EF-Tu) 314 2e-85
sp|P42475|EFTU_FIBSU Elongation factor Tu (EF-Tu) 313 3e-85
sp|Q85FT7|EFTU_CYAME Elongation factor Tu (EF-Tu) 313 4e-85
>sp|Q8BFR5|EFTU_MOUSE Elongation factor Tu, mitochondrial precursor
Length = 452
Score = 329 bits (844), Expect = 5e-90
Identities = 157/284 (55%), Positives = 216/284 (76%), Gaps = 2/284 (0%)
Frame = +3
Query: 3 INAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQTREHLVL 182
INAA V+YST ARHYAHTDCPGHADY+KNMITG ++ ILVVAA DG MPQTREHL+L
Sbjct: 108 INAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLL 167
Query: 183 AKQIGIDKLVVFINKADAA-DNEMIELVEMEVRDLLTKYGYDGENIPFVTGSALLALEGK 359
AKQIG++ +VV++NKADA D+EM+ELVE+E+R+LLT++GY GE P + GSAL ALE +
Sbjct: 168 AKQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPVIVGSALCALEQR 227
Query: 360 NEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVCTGRVERGVINLG 536
+ E+G + +LL+ +D IP+P R++DKP LPVE V SI GRGTV TG +ERG++ G
Sbjct: 228 DPELGVKSVQKLLDAVDTYIPVPTRDLDKPFLLPVESVYSIPGRGTVVTGTLERGILKKG 287
Query: 537 LAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELRRGMVIISPKSVQ 716
E++G+N +++T +TGIEMF + L++A GD +G L+R +K+E+LRRG+V++ P S+Q
Sbjct: 288 DECELLGHNKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLVMVKPGSIQ 347
Query: 717 MYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 848
+ VEAQ+Y+L++ EGGR KP +F ++S +WD IL
Sbjct: 348 PHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRVIL 391
>sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial precursor (EF-Tu) (P43)
Length = 452
Score = 327 bits (837), Expect = 3e-89
Identities = 154/284 (54%), Positives = 218/284 (76%), Gaps = 2/284 (0%)
Frame = +3
Query: 3 INAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQTREHLVL 182
INAA V+YST ARHYAHTDCPGHADY+KNMITG ++ ILVVAA DG MPQTREHL+L
Sbjct: 108 INAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLL 167
Query: 183 AKQIGIDKLVVFINKADAA-DNEMIELVEMEVRDLLTKYGYDGENIPFVTGSALLALEGK 359
A+QIG++ +VV++NKADA D+EM+ELVE+E+R+LLT++GY GE P + GSAL ALEG+
Sbjct: 168 ARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPVIVGSALCALEGR 227
Query: 360 NEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVCTGRVERGVINLG 536
+ E+G + +LL+ +D IP+PAR+++KP LPVE V S+ GRGTV TG +ERG++ G
Sbjct: 228 DPELGLKSVQKLLDAVDTYIPVPARDLEKPFLLPVEAVYSVPGRGTVVTGTLERGILKKG 287
Query: 537 LAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELRRGMVIISPKSVQ 716
E++G++ +++T +TGIEMF + L++A GD +G L+R +K+E+LRRG+V++ P S++
Sbjct: 288 DECELLGHSKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLVMVKPGSIK 347
Query: 717 MYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 848
+ VEAQ+Y+L++ EGGR KP +F ++S +WD IL
Sbjct: 348 PHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRIIL 391
>sp|P49410|EFTU_BOVIN Elongation factor Tu, mitochondrial precursor (EF-Tu)
Length = 452
Score = 325 bits (834), Expect = 7e-89
Identities = 156/284 (54%), Positives = 214/284 (75%), Gaps = 2/284 (0%)
Frame = +3
Query: 3 INAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQTREHLVL 182
INAA V+YST ARHYAHTDCPGHADY+KNMITG ++ ILVVAA DG MPQTREHL+L
Sbjct: 108 INAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLL 167
Query: 183 AKQIGIDKLVVFINKADAA-DNEMIELVEMEVRDLLTKYGYDGENIPFVTGSALLALEGK 359
A+QIG++ +VV++NKADA D+EM+ELVE+E+R+LLT++GY GE P + GSAL ALE +
Sbjct: 168 ARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQR 227
Query: 360 NEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVCTGRVERGVINLG 536
+ E+G + +LL+ +D IP+P R+++KP LPVE V SI GRGTV TG +ERG++ G
Sbjct: 228 DPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKG 287
Query: 537 LAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELRRGMVIISPKSVQ 716
E +G++ +++T +TGIEMF + LD+A GD +G L+R +K+E+LRRG+V+ P S+Q
Sbjct: 288 DECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQ 347
Query: 717 MYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 848
+ VEAQ+Y+LT+ EGGR KP +F ++S +WD IL
Sbjct: 348 PHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIIL 391
>sp|Q9Y700|EFTU_SCHPO Elongation factor Tu, mitochondrial precursor
Length = 439
Score = 321 bits (823), Expect = 1e-87
Identities = 153/276 (55%), Positives = 209/276 (75%), Gaps = 1/276 (0%)
Frame = +3
Query: 3 INAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQTREHLVL 182
I++A V+Y T RHYAH DCPGHADYIKNMITGA M+ AI+VV+ATDG MPQTREHL+L
Sbjct: 104 ISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMPQTREHLLL 163
Query: 183 AKQIGIDKLVVFINKADAADNEMIELVEMEVRDLLTKYGYDGENIPFVTGSALLALEGKN 362
A+Q+G+ ++VV+INK D + +MIELVEME+R+LL++YG+DG+N P V+GSAL ALEG+
Sbjct: 164 ARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEYGFDGDNTPIVSGSALCALEGRE 223
Query: 363 EEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVCTGRVERGVINLGL 539
EIG N I +L+ +D I LP R+ D P + +E V SI+GRGTV TGRVERG + G
Sbjct: 224 PEIGLNSITKLMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGA 283
Query: 540 AVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELRRGMVIISPKSVQM 719
+EI+GY + +KTT+TGIEMF++ LD AV GD G+LLRS+K+E+L+RGM++ P +V
Sbjct: 284 EIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMIVAQPGTVAP 343
Query: 720 YNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWD 827
+ +A Y+LT+ EGGR+ ++ Q+YS++ D
Sbjct: 344 HQKFKASFYILTKEEGGRRTGFVDKYRPQLYSRTSD 379
>sp|P02992|EFTU_YEAST Elongation factor Tu, mitochondrial precursor (tufM)
Length = 437
Score = 319 bits (817), Expect = 7e-87
Identities = 153/278 (55%), Positives = 216/278 (77%), Gaps = 3/278 (1%)
Frame = +3
Query: 3 INAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQTREHLVL 182
I+ A V+Y T RHY+H DCPGHADYIKNMITGA QM+ AI+VVAATDG MPQTREHL+L
Sbjct: 99 ISTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGQMPQTREHLLL 158
Query: 183 AKQIGIDKLVVFINKADAADN-EMIELVEMEVRDLLTKYGYDGENIPFVTGSALLALEGK 359
A+Q+G+ +VVF+NK D D+ EM+ELVEME+R+LL +YG+DG+N P + GSAL ALEG+
Sbjct: 159 ARQVGVQHIVVFVNKVDTIDDPEMLELVEMEMRELLNEYGFDGDNAPIIMGSALCALEGR 218
Query: 360 NEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVCTGRVERGVINLG 536
EIG+ I++LL+ +DE IP P R+++KP +PVE + SI+GRGTV TGRVERG + G
Sbjct: 219 QPEIGEQAIMKLLDAVDEYIPTPERDLNKPFLMPVEDIFSISGRGTVVTGRVERGNLKKG 278
Query: 537 LAVEIIGYNAS-VKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELRRGMVIISPKSV 713
+EI+G+N++ +KTT+TGIEMFR+ LD A+ GD GVLLR +++++L+RGMV+ P +V
Sbjct: 279 EELEIVGHNSTPLKTTVTGIEMFRKELDSAMAGDNAGVLLRGIRRDQLKRGMVLAKPGTV 338
Query: 714 QMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWD 827
+ + + A +Y+L++ EGGR +N++ Q++ ++ D
Sbjct: 339 KAHTKILASLYILSKEEGGRHSGFGENYRPQMFIRTAD 376
>sp|Q8KT95|EFTU_RICTY Elongation factor Tu (EF-Tu)
Length = 394
Score = 314 bits (805), Expect = 2e-85
Identities = 154/277 (55%), Positives = 206/277 (74%), Gaps = 2/277 (0%)
Frame = +3
Query: 3 INAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQTREHLVL 182
I+ A V+Y T+ RHYAH DCPGHADY+KNMITGA QM+ AILVV+A DG MPQTREH++L
Sbjct: 63 ISTAHVEYETNNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL 122
Query: 183 AKQIGIDKLVVFINKADAADN-EMIELVEMEVRDLLTKYGYDGENIPFVTGSALLALEGK 359
AKQ+G+ +VVF+NK D D+ +++ELVEMEVR+LL+KYG+ G IP + GSAL ALEGK
Sbjct: 123 AKQVGVPAMVVFLNKVDMVDDPDLLELVEMEVRELLSKYGFPGNEIPIIKGSALQALEGK 182
Query: 360 NEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVCTGRVERGVINLG 536
E G+ I EL+N +D IP P R DKP +P+E V SI+GRGTV TGRVE G+I +G
Sbjct: 183 PE--GEKAINELMNAVDSYIPQPIRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVG 240
Query: 537 LAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELRRGMVIISPKSVQ 716
+EI+G + KTT TG+EMFR+LLD+ GD VG+LLR K+EE+ RG V+ P S++
Sbjct: 241 EEIEIVGLKNTQKTTCTGVEMFRKLLDEGQSGDNVGILLRGTKREEVERGQVLAKPGSIK 300
Query: 717 MYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWD 827
++ EA++Y+L++ EGGR P T +++ Q Y ++ D
Sbjct: 301 PHDKFEAEVYVLSKEEGGRHTPFTNDYRPQFYFRTTD 337
>sp|O50306|EFTU_BACST Elongation factor Tu (EF-Tu)
Length = 395
Score = 314 bits (805), Expect = 2e-85
Identities = 156/278 (56%), Positives = 208/278 (74%), Gaps = 3/278 (1%)
Frame = +3
Query: 3 INAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQTREHLVL 182
I+ A V+Y T+ARHYAH DCPGHADY+KNMITGA QM+ AILVV+A DG MPQTREH++L
Sbjct: 63 ISTAHVEYETEARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL 122
Query: 183 AKQIGIDKLVVFINKADAADN-EMIELVEMEVRDLLTKYGYDGENIPFVTGSALLALEGK 359
++Q+G+ +VVF+NK D D+ E++ELVEMEVRDLL++Y + G+ +P + GSAL ALEG
Sbjct: 123 SRQVGVPYIVVFLNKCDMVDDEELLELVEMEVRDLLSEYDFPGDEVPVIKGSALKALEG- 181
Query: 360 NEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVCTGRVERGVINLG 536
+ + KIIEL+N +DE IP P RE+DKP +P+E V SITGRGTV TGRVERG + +G
Sbjct: 182 -DPKWEEKIIELMNAVDEYIPTPQREVDKPFMMPIEDVFSITGRGTVATGRVERGTLKVG 240
Query: 537 LAVEIIGYNASVK-TTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELRRGMVIISPKSV 713
VEIIG + K TT+TG+EMFR+LLD+A GD +G LLR V ++E+ RG V+ P S+
Sbjct: 241 DPVEIIGLSDEPKATTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVERGQVLAKPGSI 300
Query: 714 QMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWD 827
+ +AQ+Y+LT+ EGGR P N++ Q Y ++ D
Sbjct: 301 TPHTKFKAQVYVLTKEEGGRHTPFFSNYRPQFYFRTTD 338
>sp|P48865|EFTU_RICPR Elongation factor Tu (EF-Tu)
Length = 394
Score = 314 bits (804), Expect = 2e-85
Identities = 154/277 (55%), Positives = 205/277 (74%), Gaps = 2/277 (0%)
Frame = +3
Query: 3 INAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQTREHLVL 182
I+ A V+Y T RHYAH DCPGHADY+KNMITGA QM+ AILVV+A DG MPQTREH++L
Sbjct: 63 ISTAHVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL 122
Query: 183 AKQIGIDKLVVFINKADAADN-EMIELVEMEVRDLLTKYGYDGENIPFVTGSALLALEGK 359
AKQ+G+ +VVF+NK D D+ +++ELVEMEVR+LL+KYG+ G IP + GSAL ALEGK
Sbjct: 123 AKQVGVPAMVVFLNKVDMVDDPDLLELVEMEVRELLSKYGFPGNEIPIIKGSALQALEGK 182
Query: 360 NEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVCTGRVERGVINLG 536
E G+ I EL+N +D IP P R DKP +P+E V SI+GRGTV TGRVE G+I +G
Sbjct: 183 PE--GEKAINELMNAVDSYIPQPIRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVG 240
Query: 537 LAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELRRGMVIISPKSVQ 716
+EI+G + KTT TG+EMFR+LLD+ GD VG+LLR K+EE+ RG V+ P S++
Sbjct: 241 EEIEIVGLKNTQKTTCTGVEMFRKLLDEGQSGDNVGILLRGTKREEVERGQVLAKPGSIK 300
Query: 717 MYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWD 827
++ EA++Y+L++ EGGR P T +++ Q Y ++ D
Sbjct: 301 PHDKFEAEVYVLSKEEGGRHTPFTNDYRPQFYFRTTD 337
>sp|P42475|EFTU_FIBSU Elongation factor Tu (EF-Tu)
Length = 375
Score = 313 bits (803), Expect = 3e-85
Identities = 156/277 (56%), Positives = 208/277 (75%), Gaps = 2/277 (0%)
Frame = +3
Query: 3 INAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQTREHLVL 182
IN + V+Y+T RHYAH DCPGHADY+KNM+TGA QM+ AILVVAATDG MPQTREH++L
Sbjct: 44 INTSHVEYTTANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMPQTREHILL 103
Query: 183 AKQIGIDKLVVFINKADAADN-EMIELVEMEVRDLLTKYGYDGENIPFVTGSALLALEGK 359
A Q+G+ K+VVF+NK D D+ E+++LVEMEVR+LL+KY +DG+N P + GSAL ALEG
Sbjct: 104 AHQVGVPKIVVFMNKCDMVDDAEILDLVEMEVRELLSKYDFDGDNTPIIRGSALKALEGD 163
Query: 360 NEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVCTGRVERGVINLG 536
E ++K++EL+N DE IPLP R+ DKP +P+E V +ITGRGTV TGR+ERGV+ L
Sbjct: 164 PEY--QDKVMELMNACDEYIPLPQRDTDKPFLMPIEDVFTITGRGTVATGRIERGVVRLN 221
Query: 537 LAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELRRGMVIISPKSVQ 716
VE IG + + ITG+EMFR+LLD A GD VG+LLR +K+++ RGMV+ +PKSV
Sbjct: 222 DKVERIGLGETTEYVITGVEMFRKLLDDAQAGDNVGLLLRGAEKKDIVRGMVLAAPKSVT 281
Query: 717 MYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWD 827
+ +A+IY+LT+ EGGR P ++ Q Y ++ D
Sbjct: 282 PHTEFKAEIYVLTKDEGGRHTPFMNGYRPQFYFRTTD 318
>sp|Q85FT7|EFTU_CYAME Elongation factor Tu (EF-Tu)
Length = 410
Score = 313 bits (802), Expect = 4e-85
Identities = 156/285 (54%), Positives = 210/285 (73%), Gaps = 10/285 (3%)
Frame = +3
Query: 3 INAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQTREHLVL 182
IN + V+Y T+ RHYAH DCPGHADY+KNMITGA QM+ AILVV+A DG MPQTREH++L
Sbjct: 64 INTSHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL 123
Query: 183 AKQIGIDKLVVFINKADAADN-EMIELVEMEVRDLLTKYGYDGENIPFVTGSALLALEG- 356
AKQ+G+ +VVF+NKAD D+ E++ELVE+EVR+LL+KY + G+ IPFVTGSALLALE
Sbjct: 124 AKQVGVPSIVVFLNKADMVDDPELLELVELEVRELLSKYDFPGDTIPFVTGSALLALEAC 183
Query: 357 -KNEEIGK------NKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVCTGRV 512
KN +IG+ +KI EL+ +DE IP P R++DK + VE V SITGRGTV TGR+
Sbjct: 184 MKNPKIGEGKDKWVDKIFELMKIVDEYIPTPQRDVDKSFLMAVEDVFSITGRGTVATGRI 243
Query: 513 ERGVINLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELRRGMV 692
ERG + +G +EI+G + TT+TG+EMF++ LD+ + GD VGVLLR V+K ++ RGMV
Sbjct: 244 ERGRVKVGETIEIVGLKNTKTTTVTGLEMFQKTLDEGIAGDNVGVLLRGVQKTDIERGMV 303
Query: 693 IISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWD 827
+ P S+ + EA++Y+LT+ EGGR P ++ Q Y ++ D
Sbjct: 304 LAKPGSITPHTKFEAEVYVLTKEEGGRHTPFFPGYRPQFYVRTTD 348
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,539,229
Number of Sequences: 369166
Number of extensions: 1757890
Number of successful extensions: 7176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6295
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)