Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_I22
(510 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49263|PXN1_XENLA Pentraxin fusion protein precursor 56 6e-08
sp|P14081|SELB_ECOLI Selenocysteine-specific elongation fac... 32 1.1
sp|Q8EPB3|THII_OCEIH Probable thiamine biosynthesis protein... 30 4.3
sp|P25279|YD2M_HERAU Hypothetical 15.4 kDa protein in HgiDI... 29 5.6
sp|Q9BYP7|WNK3_HUMAN Serine/threonine-protein kinase WNK3 (... 28 9.6
sp|Q97ZC4|NADA_SULSO Quinolinate synthetase A 28 9.6
sp|O67353|PYRG_AQUAE CTP synthase (UTP--ammonia ligase) (CT... 28 9.6
>sp|P49263|PXN1_XENLA Pentraxin fusion protein precursor
Length = 416
Score = 55.8 bits (133), Expect = 6e-08
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Frame = +1
Query: 22 DLCYTTNKHLEHWTVNLGEPHKINNVVVYNRQDCCHENIVGAAVEL---LKENGEVHSRC 192
D C+T + W +++ ++++V + NR DCC E I GA + + KE G +RC
Sbjct: 74 DCCHTEKQMHPWWQLDMKSKMRVHSVAITNRGDCCRERINGAEIRIGNSKKEGGLNSTRC 133
Query: 193 GVF--LSPERKFNFNCKNETAWQVRIQ-HTKPQFIHLSEVEVYGKSIKI 330
GV ++ E +FNCK V + + +++ L EV+V+ +++
Sbjct: 134 GVVFKMNYEETLSFNCKELEGRYVTVTIPDRIEYLTLCEVQVFADPLEV 182
>sp|P14081|SELB_ECOLI Selenocysteine-specific elongation factor (SelB translation factor)
Length = 614
Score = 31.6 bits (70), Expect = 1.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 130 ENIVGAAVELLKENGEVHSRCGVFLSPERKFNFNCKNETAWQ 255
E +V +E ++E+G++HS G P+ K F+ + + WQ
Sbjct: 455 EALVLLLIEKMRESGDIHSHHGWLHLPDHKAGFSEEQQAIWQ 496
>sp|Q8EPB3|THII_OCEIH Probable thiamine biosynthesis protein thiI
Length = 400
Score = 29.6 bits (65), Expect = 4.3
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Frame = +1
Query: 157 LLKENGEVHSRCGVFLSPERKFNFNCKNETAWQVRIQHTKPQFIHLSE-VEVYGKSIKIH 333
LL +G + S FL+ +R + + + K + + L++ + YGKSIK+H
Sbjct: 180 LLLLSGGIDSPVAGFLAMKRGVQLEAIHFHSPPFTSERAKQKVLDLTQTLTKYGKSIKVH 239
Query: 334 VSNRTKF--VIKKQMEN--SNTIMTSSLVLIFSSICLQ 435
+ TK I ++M N + TIM + I IC Q
Sbjct: 240 IVPFTKLQQEIFREMPNDYAMTIMRRMMFRISERICEQ 277
>sp|P25279|YD2M_HERAU Hypothetical 15.4 kDa protein in HgiDIIM 5'region (ORF15)
Length = 138
Score = 29.3 bits (64), Expect = 5.6
Identities = 22/78 (28%), Positives = 31/78 (39%)
Frame = +1
Query: 112 RQDCCHENIVGAAVELLKENGEVHSRCGVFLSPERKFNFNCKNETAWQVRIQHTKPQFIH 291
R D HE + E GE+ +R + LS R NFN +H F+
Sbjct: 19 RNDVAHEAGTNNVQIMRIEKGEIDTRGSLLLSVVRAVNFNA----------EHIAQLFLM 68
Query: 292 LSEVEVYGKSIKIHVSNR 345
L E G+++ I NR
Sbjct: 69 LVATEEDGRNLAISWINR 86
>sp|Q9BYP7|WNK3_HUMAN Serine/threonine-protein kinase WNK3 (Protein kinase with no lysine
3) (Protein kinase, lysine-deficient 3)
Length = 1743
Score = 28.5 bits (62), Expect = 9.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 217 KFNFNCKNETAWQVRIQHTKPQFIHLSEVEVYGKSIKIHVSNRTKFVIKK 366
+F+FN + +T +V + K F H S+ + KSI+ V+ K KK
Sbjct: 449 EFSFNLETDTPEEVAYEMVKSGFFHESDSKAVAKSIRDRVTPIKKTREKK 498
>sp|Q97ZC4|NADA_SULSO Quinolinate synthetase A
Length = 311
Score = 28.5 bits (62), Expect = 9.6
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +2
Query: 107 IIDRIVATKTSL--VQQLNY*RKTVKFIVD--VVYFFHQKENSTSIVKMKPRGRCVFSIQ 274
+ D IV + T++ VQ+LN T+ F D + + QK + I+K+ P GRC+
Sbjct: 123 LADYIVTSSTAVKVVQKLN--ADTILFGPDANLANYVQQKVPNKKIIKVPPNGRCIV--- 177
Query: 275 NHSSY 289
H++Y
Sbjct: 178 -HANY 181
>sp|O67353|PYRG_AQUAE CTP synthase (UTP--ammonia ligase) (CTP synthetase)
Length = 531
Score = 28.5 bits (62), Expect = 9.6
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 16 GQDLCYTTNKHLEHWTVNLGEPHKINNVVVYNRQDCCHENIVGAAVEL 159
G D T +LEH VNLG+ KI N V+ N ++ + +VG VEL
Sbjct: 254 GIDRIITERLNLEHREVNLGKWKKIVN-VLRNPEEEVNVALVGKYVEL 300
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,803,560
Number of Sequences: 369166
Number of extensions: 1258477
Number of successful extensions: 2638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2638
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)