Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_I15
(205 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48158|RL23_CAEEL 60S ribosomal protein L23 97 1e-20
sp|P62830|RL23_MOUSE 60S ribosomal protein L23 >gi|51338617... 96 3e-20
sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23 96 3e-20
sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23 96 3e-20
sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A) 94 1e-19
sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 93 2e-19
sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A) 93 2e-19
sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 92 5e-19
sp|O42867|RL23_SCHPO 60S ribosomal protein L23 91 1e-18
sp|Q07760|RL23_TOBAC 60S ribosomal protein L23 88 7e-18
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
Length = 140
Score = 97.1 bits (240), Expect = 1e-20
Identities = 44/52 (84%), Positives = 49/52 (94%)
Frame = +2
Query: 2 VVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 157
VVIRQRK ++RKDGT I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 80 VVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
sp|P62832|RL23_RAT 60S ribosomal protein L23
sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
Length = 140
Score = 95.9 bits (237), Expect = 3e-20
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +2
Query: 2 VVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 157
VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 80 VVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
Length = 140
Score = 95.9 bits (237), Expect = 3e-20
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +2
Query: 2 VVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 157
VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 80 VVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
Length = 140
Score = 95.9 bits (237), Expect = 3e-20
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +2
Query: 2 VVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 157
VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 80 VVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
Length = 140
Score = 93.6 bits (231), Expect = 1e-19
Identities = 42/52 (80%), Positives = 48/52 (92%)
Frame = +2
Query: 2 VVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 157
VVIRQRK ++R+DG I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 80 VVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
Length = 140
Score = 93.2 bits (230), Expect = 2e-19
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = +2
Query: 2 VVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWP 154
VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP
Sbjct: 80 VVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWP 130
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
Length = 140
Score = 92.8 bits (229), Expect = 2e-19
Identities = 41/52 (78%), Positives = 48/52 (92%)
Frame = +2
Query: 2 VVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 157
VVIRQRK ++R+DG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 80 VVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23
Length = 140
Score = 91.7 bits (226), Expect = 5e-19
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = +2
Query: 2 VVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 157
VV+RQRK Y+R DG+ I FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP+
Sbjct: 80 VVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPR 131
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
Length = 139
Score = 90.5 bits (223), Expect = 1e-18
Identities = 39/52 (75%), Positives = 47/52 (90%)
Frame = +2
Query: 2 VVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 157
+V+RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGPVAKECAD+WP+
Sbjct: 79 IVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>sp|Q07760|RL23_TOBAC 60S ribosomal protein L23
Length = 140
Score = 87.8 bits (216), Expect = 7e-18
Identities = 38/52 (73%), Positives = 46/52 (88%)
Frame = +2
Query: 2 VVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 157
VV+RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGP+ KECAD+WP+
Sbjct: 80 VVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPR 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,863,266
Number of Sequences: 369166
Number of extensions: 362596
Number of successful extensions: 960
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 68,354,980
effective HSP length: 39
effective length of database: 61,150,315
effective search space used: 1712208820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)