Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_I02
(332 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 36 0.032
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 34 0.12
sp|P30321|DPOL_PBCV1 DNA polymerase 30 1.3
sp|P34504|YMV2_CAEEL Hypothetical protein K04H4.2 precursor 29 3.0
sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 pre... 29 3.9
sp|P16563|CRIS2_MOUSE Cysteine-rich secretory protein 2 pre... 28 5.1
sp|P33817|VP4A_VARV Major core protein P4a precursor (Virio... 28 5.1
sp|Q97WE6|SYC_SULSO Cysteinyl-tRNA synthetase (Cysteine--tR... 28 5.1
sp|P54108|CRIS3_HUMAN Cysteine-rich secretory protein 3 pre... 28 6.6
sp|P19812|UBR1_YEAST Ubiquitin-protein ligase E3 component ... 28 8.7
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 35.8 bits (81), Expect = 0.032
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 18 PYEVGAACSKCPKGTSCKNNLC 83
PY+ GA CS CPK C N+LC
Sbjct: 174 PYKQGATCSDCPKDDKCLNSLC 195
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 33.9 bits (76), Expect = 0.12
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 18 PYEVGAACSKCPKGTSCKNNLC 83
PY+ GA CS CP C +NLC
Sbjct: 185 PYKRGATCSACPNNDKCLDNLC 206
>sp|P30321|DPOL_PBCV1 DNA polymerase
Length = 913
Score = 30.4 bits (67), Expect = 1.3
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +1
Query: 130 RKDTVDITRDTLVITRDMLVIIKDTLAIIKDTLVIIRKXXXXXXXXXXFIENFMIDALL 306
R+D ITRD L + D ++ KDT + +TL IRK +E FM+ LL
Sbjct: 721 RRDFSPITRDILKESLDTILYKKDTPTAVSETLERIRKVLDNEYP----MEKFMMSKLL 775
>sp|P34504|YMV2_CAEEL Hypothetical protein K04H4.2 precursor
Length = 967
Score = 29.3 bits (64), Expect = 3.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 15 APYEVGAACSKCPKGTSCKNNLC 83
+P CSKCP G++C+N C
Sbjct: 169 SPSNTENPCSKCPLGSACRNGNC 191
>sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 precursor (CRISP-3)
Length = 245
Score = 28.9 bits (63), Expect = 3.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 18 PYEVGAACSKCPKGTSCKNNLC 83
PYE G C++CP +C N LC
Sbjct: 184 PYEQGTPCARCP--GNCDNGLC 203
>sp|P16563|CRIS2_MOUSE Cysteine-rich secretory protein 2 precursor (CRISP-2)
(Testis-specific protein TPX-1)
Length = 243
Score = 28.5 bits (62), Expect = 5.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 18 PYEVGAACSKCPKGTSCKNNLC 83
PY+ G C+ CP +C+N LC
Sbjct: 182 PYQQGTPCASCP--NNCENGLC 201
>sp|P33817|VP4A_VARV Major core protein P4a precursor (Virion core protein P4a)
[Contains: Core protein P4a; 9 kDa peptide (9K); 23 kDa
protein (23K)]
Length = 892
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -3
Query: 258 LFSNCFSNDDQRV--FYDGQRVFYDDQHVS-CDDQRVSCDVHRVFSFF 124
++ F +D RV +Y+G RV +DD+ ++ C R + R+ FF
Sbjct: 260 MYEQYFVDDYDRVPIYYNGNRVIFDDEIINFCISMRYQSLIPRLVEFF 307
>sp|Q97WE6|SYC_SULSO Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 470
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 100 LQLWNLTKKERKDTVDITRDTLVITRDMLVIIKDTLAIIKDTL 228
L+ W LT R +D + + L + L IKD++AII+D +
Sbjct: 289 LRYWYLTSHYRSP-IDFSEEALEQAKSALQRIKDSMAIIRDVI 330
>sp|P54108|CRIS3_HUMAN Cysteine-rich secretory protein 3 precursor (CRISP-3) (SGP28
protein)
Length = 245
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 18 PYEVGAACSKCPKGTSCKNNLC 83
PYE GA C+ CP +C + LC
Sbjct: 184 PYEQGAPCASCP--DNCDDGLC 203
>sp|P19812|UBR1_YEAST Ubiquitin-protein ligase E3 component N-recognin-1 (N-end-recognizing
protein)
Length = 1950
Score = 27.7 bits (60), Expect = 8.7
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = -3
Query: 285 IFNKSKF*NLFSNCFSNDDQRVFYDGQRVFYDDQHVSCDDQR--VSCDVHRVFSFFLRQI 112
IFN ++F ++ +++D+++ + D + ++ SC ++ VSC+ H + F R +
Sbjct: 1249 IFNPNEFMPMWDGFYNDDEKQAYIDDDVLEALKENGSCGSRKVFVSCNHHIHHNCFKRYV 1308
Query: 111 PK 106
K
Sbjct: 1309 QK 1310
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,924,580
Number of Sequences: 369166
Number of extensions: 439136
Number of successful extensions: 1483
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)