Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_H17
(292 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42036|RS143_ARATH 40S ribosomal protein S14-3 107 6e-24
sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2 107 1e-23
sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1 107 1e-23
sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1) 106 2e-23
sp|P13471|RS14_RAT 40S ribosomal protein S14 105 2e-23
sp|P62264|RS14_MOUSE 40S ribosomal protein S14 >gi|50403752... 105 2e-23
sp|O22584|RS14_LUPLU 40S ribosomal protein S14 105 2e-23
sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2) 105 4e-23
sp|P48150|RS14_CAEEL 40S ribosomal protein S14 105 4e-23
sp|P27069|RS14_KLULA 40S ribosomal protein S14 (RP59) 104 5e-23
>sp|P42036|RS143_ARATH 40S ribosomal protein S14-3
Length = 150
Score = 107 bits (268), Expect = 6e-24
Identities = 53/77 (68%), Positives = 61/77 (79%)
Frame = +1
Query: 1 ADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSG 180
ADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T SG
Sbjct: 63 ADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSG 122
Query: 181 MKIGRIEDVTPIPHDTT 231
MKIGRIEDVTPIP D+T
Sbjct: 123 MKIGRIEDVTPIPTDST 139
>sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2
Length = 150
Score = 107 bits (266), Expect = 1e-23
Identities = 53/77 (68%), Positives = 61/77 (79%)
Frame = +1
Query: 1 ADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSG 180
ADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T SG
Sbjct: 63 ADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSG 122
Query: 181 MKIGRIEDVTPIPHDTT 231
MKIGRIEDVTPIP D+T
Sbjct: 123 MKIGRIEDVTPIPTDST 139
>sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1
Length = 150
Score = 107 bits (266), Expect = 1e-23
Identities = 53/77 (68%), Positives = 61/77 (79%)
Frame = +1
Query: 1 ADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSG 180
ADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T SG
Sbjct: 63 ADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSG 122
Query: 181 MKIGRIEDVTPIPHDTT 231
MKIGRIEDVTPIP D+T
Sbjct: 123 MKIGRIEDVTPIPTDST 139
>sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1)
Length = 149
Score = 106 bits (264), Expect = 2e-23
Identities = 51/77 (66%), Positives = 61/77 (79%)
Frame = +1
Query: 1 ADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSG 180
ADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG K++T SG
Sbjct: 62 ADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 121
Query: 181 MKIGRIEDVTPIPHDTT 231
MKIGRIEDVTP+P D+T
Sbjct: 122 MKIGRIEDVTPVPTDST 138
>sp|P13471|RS14_RAT 40S ribosomal protein S14
Length = 151
Score = 105 bits (263), Expect = 2e-23
Identities = 51/77 (66%), Positives = 61/77 (79%)
Frame = +1
Query: 1 ADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSG 180
ADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG +++T SG
Sbjct: 64 ADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSG 123
Query: 181 MKIGRIEDVTPIPHDTT 231
MKIGRIEDVTPIP D+T
Sbjct: 124 MKIGRIEDVTPIPSDST 140
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14
sp|P62263|RS14_HUMAN 40S ribosomal protein S14
sp|P62265|RS14_CRIGR 40S ribosomal protein S14
Length = 151
Score = 105 bits (263), Expect = 2e-23
Identities = 51/77 (66%), Positives = 61/77 (79%)
Frame = +1
Query: 1 ADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSG 180
ADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG +++T SG
Sbjct: 64 ADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSG 123
Query: 181 MKIGRIEDVTPIPHDTT 231
MKIGRIEDVTPIP D+T
Sbjct: 124 MKIGRIEDVTPIPSDST 140
>sp|O22584|RS14_LUPLU 40S ribosomal protein S14
Length = 150
Score = 105 bits (263), Expect = 2e-23
Identities = 52/77 (67%), Positives = 60/77 (77%)
Frame = +1
Query: 1 ADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSG 180
ADRDESSPYAAMLAAQDVA RCK+LGITA+H+++RATGG K++T SG
Sbjct: 63 ADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARSG 122
Query: 181 MKIGRIEDVTPIPHDTT 231
MKIGRIEDVTPIP D+T
Sbjct: 123 MKIGRIEDVTPIPSDST 139
>sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2)
Length = 150
Score = 105 bits (261), Expect = 4e-23
Identities = 50/77 (64%), Positives = 61/77 (79%)
Frame = +1
Query: 1 ADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSG 180
ADRDESSPYAAMLA+QDVA+RCK+LGITA+H+++RATGG K++T SG
Sbjct: 63 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 122
Query: 181 MKIGRIEDVTPIPHDTT 231
MKIGRIEDVTP+P D+T
Sbjct: 123 MKIGRIEDVTPVPTDST 139
>sp|P48150|RS14_CAEEL 40S ribosomal protein S14
Length = 152
Score = 105 bits (261), Expect = 4e-23
Identities = 51/77 (66%), Positives = 60/77 (77%)
Frame = +1
Query: 1 ADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSG 180
ADRDESSPYAAMLAAQDVA+RCKQLGI A+H+++RATGGT+++T +G
Sbjct: 65 ADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAG 124
Query: 181 MKIGRIEDVTPIPHDTT 231
MKIGRIEDVTPIP D T
Sbjct: 125 MKIGRIEDVTPIPSDCT 141
>sp|P27069|RS14_KLULA 40S ribosomal protein S14 (RP59)
Length = 137
Score = 104 bits (260), Expect = 5e-23
Identities = 49/77 (63%), Positives = 61/77 (79%)
Frame = +1
Query: 1 ADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSG 180
ADRDESSPYAAMLAAQDVA +CK++GITAVH+++RATGGT+S+T SG
Sbjct: 50 ADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRALARSG 109
Query: 181 MKIGRIEDVTPIPHDTT 231
++IGRIEDVTP+P D+T
Sbjct: 110 LRIGRIEDVTPVPSDST 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,714,125
Number of Sequences: 369166
Number of extensions: 347654
Number of successful extensions: 940
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)