Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_H13
(760 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05091|ALDH2_HUMAN Aldehyde dehydrogenase, mitochondrial... 363 e-100
sp|P47738|ALDH2_MOUSE Aldehyde dehydrogenase, mitochondrial... 359 4e-99
sp|P11884|ALDH2_RAT Aldehyde dehydrogenase, mitochondrial p... 359 4e-99
sp|P81178|ALDH2_MESAU Aldehyde dehydrogenase, mitochondrial... 359 4e-99
sp|P20000|ALDH2_BOVIN Aldehyde dehydrogenase, mitochondrial... 357 3e-98
sp|O93344|AL1A2_CHICK Retinal dehydrogenase 2 (RalDH2) (RAL... 357 3e-98
sp|O94788|AL1A2_HUMAN Retinal dehydrogenase 2 (RalDH2) (RAL... 355 7e-98
sp|Q63639|AL1A2_RAT Retinal dehydrogenase 2 (RalDH2) (RALDH... 354 1e-97
sp|Q62148|AL1A2_MOUSE Retinal dehydrogenase 2 (RalDH2) (RAL... 354 2e-97
sp|P00352|AL1A1_HUMAN Retinal dehydrogenase 1 (RalDH1) (RAL... 347 2e-95
>sp|P05091|ALDH2_HUMAN Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(ALDHI) (ALDH-E2)
Length = 517
Score = 363 bits (933), Expect = e-100
Identities = 171/253 (67%), Positives = 203/253 (80%), Gaps = 1/253 (0%)
Frame = +2
Query: 5 IPIRGNYLGFTRHEAVGICGQIIPWNFPLLMQAWKLGPALCMGNTVVMKTAEQTPLTANY 184
IPI G++ +TRHE VG+CGQIIPWNFPLLMQAWKLGPAL GN VVMK AEQTPLTA Y
Sbjct: 161 IPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALY 220
Query: 185 VASLIAEAGFPPGVVNIVPGMGPVAGAALVSHPNVDKIAFTGSTEVGRIISSECNKNNIK 364
VA+LI EAGFPPGVVNIVPG GP AGAA+ SH +VDK+AFTGSTE+GR+I +N+K
Sbjct: 221 VANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLK 280
Query: 365 RLTLELGGKSPNIVLADADFDHAVKSSHFALFFNNGQCCCAGSRIYVEEKIYDKFVEAMV 544
R+TLELGGKSPNI+++DAD D AV+ +HFALFFN GQCCCAGSR +V+E IYD+FVE V
Sbjct: 281 RVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVERSV 340
Query: 545 AEAKKKIVGNPFDD-VDQGPQVDKDQLNKIIDLINSGKSEGAQLCTGGKQLGDKGYFVEP 721
A AK ++VGNPFD +QGPQVD+ Q KI+ IN+GK EGA+L GG D+GYF++P
Sbjct: 341 ARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQP 400
Query: 722 TIFSKVNDHMRIA 760
T+F V D M IA
Sbjct: 401 TVFGDVQDGMTIA 413
>sp|P47738|ALDH2_MOUSE Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(AHD-M1) (ALDHI) (ALDH-E2)
Length = 519
Score = 359 bits (922), Expect = 4e-99
Identities = 169/253 (66%), Positives = 200/253 (79%), Gaps = 1/253 (0%)
Frame = +2
Query: 5 IPIRGNYLGFTRHEAVGICGQIIPWNFPLLMQAWKLGPALCMGNTVVMKTAEQTPLTANY 184
IPI G++ +TRHE VG+CGQIIPWNFPLLMQAWKLGPAL GN VVMK AEQTPLTA Y
Sbjct: 163 IPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALY 222
Query: 185 VASLIAEAGFPPGVVNIVPGMGPVAGAALVSHPNVDKIAFTGSTEVGRIISSECNKNNIK 364
VA+LI EAGFPPGVVNIVPG GP AGAA+ SH VDK+AFTGSTEVG +I +N+K
Sbjct: 223 VANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEGVDKVAFTGSTEVGHLIQVAAGSSNLK 282
Query: 365 RLTLELGGKSPNIVLADADFDHAVKSSHFALFFNNGQCCCAGSRIYVEEKIYDKFVEAMV 544
R+TLELGGKSPNI+++DAD D AV+ +HFALFFN GQCCCAGSR +V+E +YD+FVE V
Sbjct: 283 RVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQENVYDEFVERSV 342
Query: 545 AEAKKKIVGNPFDD-VDQGPQVDKDQLNKIIDLINSGKSEGAQLCTGGKQLGDKGYFVEP 721
A AK ++VGNPFD +QGPQVD+ Q KI+ I SG+ EGA+L GG D+GYF++P
Sbjct: 343 ARAKSRVVGNPFDSRTEQGPQVDETQFKKILGYIKSGQQEGAKLLCGGGAAADRGYFIQP 402
Query: 722 TIFSKVNDHMRIA 760
T+F V D M IA
Sbjct: 403 TVFGDVKDGMTIA 415
>sp|P11884|ALDH2_RAT Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(ALDH1) (ALDH-E2)
Length = 519
Score = 359 bits (922), Expect = 4e-99
Identities = 169/253 (66%), Positives = 201/253 (79%), Gaps = 1/253 (0%)
Frame = +2
Query: 5 IPIRGNYLGFTRHEAVGICGQIIPWNFPLLMQAWKLGPALCMGNTVVMKTAEQTPLTANY 184
IPI G++ +TRHE VG+CGQIIPWNFPLLMQAWKLGPAL GN VVMK AEQTPLTA Y
Sbjct: 163 IPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALY 222
Query: 185 VASLIAEAGFPPGVVNIVPGMGPVAGAALVSHPNVDKIAFTGSTEVGRIISSECNKNNIK 364
VA+LI EAGFPPGVVNIVPG GP AGAA+ SH +VDK+AFTGSTEVG +I +N+K
Sbjct: 223 VANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGSSNLK 282
Query: 365 RLTLELGGKSPNIVLADADFDHAVKSSHFALFFNNGQCCCAGSRIYVEEKIYDKFVEAMV 544
R+TLELGGKSPNI+++DAD D AV+ +HFALFFN GQCCCAGSR +V+E +YD+FVE V
Sbjct: 283 RVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDVYDEFVERSV 342
Query: 545 AEAKKKIVGNPFDD-VDQGPQVDKDQLNKIIDLINSGKSEGAQLCTGGKQLGDKGYFVEP 721
A AK ++VGNPFD +QGPQVD+ Q KI+ I SG+ EGA+L GG D+GYF++P
Sbjct: 343 ARAKSRVVGNPFDSRTEQGPQVDETQFKKILGYIKSGQQEGAKLLCGGGAAADRGYFIQP 402
Query: 722 TIFSKVNDHMRIA 760
T+F V D M IA
Sbjct: 403 TVFGDVKDGMTIA 415
>sp|P81178|ALDH2_MESAU Aldehyde dehydrogenase, mitochondrial (ALDH class 2) (ALDH1)
(ALDH-E2)
Length = 500
Score = 359 bits (922), Expect = 4e-99
Identities = 169/253 (66%), Positives = 201/253 (79%), Gaps = 1/253 (0%)
Frame = +2
Query: 5 IPIRGNYLGFTRHEAVGICGQIIPWNFPLLMQAWKLGPALCMGNTVVMKTAEQTPLTANY 184
IPI G++ +TRHE VG+CGQIIPWNFPLLMQAWKLGPAL GN VVMK AEQTPLTA Y
Sbjct: 144 IPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALY 203
Query: 185 VASLIAEAGFPPGVVNIVPGMGPVAGAALVSHPNVDKIAFTGSTEVGRIISSECNKNNIK 364
VA+LI EAGFPPGVVNIVPG GP AGAA+ SH +VDK+AFTGSTEVG +I +N+K
Sbjct: 204 VANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGSSNLK 263
Query: 365 RLTLELGGKSPNIVLADADFDHAVKSSHFALFFNNGQCCCAGSRIYVEEKIYDKFVEAMV 544
R+TLELGGKSPNI+++DAD D AV+ +HFALFFN GQCCCAGSR +V+E +YD+FVE V
Sbjct: 264 RVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDVYDEFVERSV 323
Query: 545 AEAKKKIVGNPFDD-VDQGPQVDKDQLNKIIDLINSGKSEGAQLCTGGKQLGDKGYFVEP 721
A AK ++VGNPFD +QGPQVD+ Q KI+ I SG+ EGA+L GG D+GYF++P
Sbjct: 324 ARAKSRVVGNPFDSRTEQGPQVDETQFKKILGYIKSGQQEGAKLLCGGGAAADRGYFIQP 383
Query: 722 TIFSKVNDHMRIA 760
T+F V D M IA
Sbjct: 384 TVFGDVKDGMTIA 396
>sp|P20000|ALDH2_BOVIN Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(ALDHI) (ALDH-E2)
Length = 520
Score = 357 bits (915), Expect = 3e-98
Identities = 166/253 (65%), Positives = 200/253 (79%), Gaps = 1/253 (0%)
Frame = +2
Query: 5 IPIRGNYLGFTRHEAVGICGQIIPWNFPLLMQAWKLGPALCMGNTVVMKTAEQTPLTANY 184
IPI G+Y +TRHE VG+CGQIIPWNFPLLMQAWKLGPAL GN VVMK AEQTPLTA Y
Sbjct: 164 IPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALY 223
Query: 185 VASLIAEAGFPPGVVNIVPGMGPVAGAALVSHPNVDKIAFTGSTEVGRIISSECNKNNIK 364
VA+LI EAGFPPGVVN++PG GP AGAA+ SH +VDK+AFTGSTEVG +I K+N+K
Sbjct: 224 VANLIKEAGFPPGVVNVIPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGKSNLK 283
Query: 365 RLTLELGGKSPNIVLADADFDHAVKSSHFALFFNNGQCCCAGSRIYVEEKIYDKFVEAMV 544
R+TLE+GGKSPNI+++DAD D AV+ +HFALFFN GQCCCAGSR +V+E IY +FVE V
Sbjct: 284 RVTLEIGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYAEFVERSV 343
Query: 545 AEAKKKIVGNPFDD-VDQGPQVDKDQLNKIIDLINSGKSEGAQLCTGGKQLGDKGYFVEP 721
A AK ++VGNPFD +QGPQVD+ Q K++ I SGK EG +L GG D+GYF++P
Sbjct: 344 ARAKSRVVGNPFDSRTEQGPQVDETQFKKVLGYIKSGKEEGLKLLCGGGAAADRGYFIQP 403
Query: 722 TIFSKVNDHMRIA 760
T+F + D M IA
Sbjct: 404 TVFGDLQDGMTIA 416
>sp|O93344|AL1A2_CHICK Retinal dehydrogenase 2 (RalDH2) (RALDH 2) (RALDH(II))
(Retinaldehyde-specific dehydrogenase type 2) (Aldehyde
dehydrogenase family 1 member A2)
Length = 499
Score = 357 bits (915), Expect = 3e-98
Identities = 166/253 (65%), Positives = 205/253 (81%), Gaps = 1/253 (0%)
Frame = +2
Query: 5 IPIRGNYLGFTRHEAVGICGQIIPWNFPLLMQAWKLGPALCMGNTVVMKTAEQTPLTANY 184
IP+ G+Y FTRHE +G+CGQIIPWNFPLLM AWK+ PALC GNTVV+K AEQTPL+A Y
Sbjct: 143 IPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALY 202
Query: 185 VASLIAEAGFPPGVVNIVPGMGPVAGAALVSHPNVDKIAFTGSTEVGRIISSECNKNNIK 364
+ +LI EAGFPPGVVNI+PG GP+ GAA+ SH +DKIAFTGSTEVG++I ++N+K
Sbjct: 203 MGALIKEAGFPPGVVNILPGFGPIVGAAIASHVGIDKIAFTGSTEVGKLIQEAAGRSNLK 262
Query: 365 RLTLELGGKSPNIVLADADFDHAVKSSHFALFFNNGQCCCAGSRIYVEEKIYDKFVEAMV 544
R+TLELGGKSPNI+ ADAD D+AV+ +H +FFN GQCC AGSRIYVEE IY++FV V
Sbjct: 263 RVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIYVEESIYEEFVRRSV 322
Query: 545 AEAKKKIVGNPFD-DVDQGPQVDKDQLNKIIDLINSGKSEGAQLCTGGKQLGDKGYFVEP 721
AK+++VG+PFD +QGPQ+DK Q NKI++LI SG +EGA+L GGK LG KG+F+EP
Sbjct: 323 ERAKRRVVGSPFDPTTEQGPQIDKKQYNKILELIQSGITEGAKLECGGKGLGRKGFFIEP 382
Query: 722 TIFSKVNDHMRIA 760
T+FS V D MRIA
Sbjct: 383 TVFSNVTDDMRIA 395
>sp|O94788|AL1A2_HUMAN Retinal dehydrogenase 2 (RalDH2) (RALDH 2) (RALDH(II))
(Retinaldehyde-specific dehydrogenase type 2) (Aldehyde
dehydrogenase family 1 member A2)
Length = 499
Score = 355 bits (911), Expect = 7e-98
Identities = 166/253 (65%), Positives = 205/253 (81%), Gaps = 1/253 (0%)
Frame = +2
Query: 5 IPIRGNYLGFTRHEAVGICGQIIPWNFPLLMQAWKLGPALCMGNTVVMKTAEQTPLTANY 184
IP+ G+Y FTRHE +G+CGQIIPWNFPLLM AWK+ PALC GNTVV+K AEQTPL+A Y
Sbjct: 143 IPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALY 202
Query: 185 VASLIAEAGFPPGVVNIVPGMGPVAGAALVSHPNVDKIAFTGSTEVGRIISSECNKNNIK 364
+ +LI EAGFPPGV+NI+PG GP AGAA+ SH +DKIAFTGSTEVG++I ++N+K
Sbjct: 203 MGALIKEAGFPPGVINILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLK 262
Query: 365 RLTLELGGKSPNIVLADADFDHAVKSSHFALFFNNGQCCCAGSRIYVEEKIYDKFVEAMV 544
R+TLELGGKSPNI+ ADAD D+AV+ +H +FFN GQCC AGSRI+VEE IY++FV V
Sbjct: 263 RVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVRRSV 322
Query: 545 AEAKKKIVGNPFD-DVDQGPQVDKDQLNKIIDLINSGKSEGAQLCTGGKQLGDKGYFVEP 721
AK++IVG+PFD +QGPQ+DK Q NKI++LI SG +EGA+L GGK LG KG+F+EP
Sbjct: 323 ERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKGLGRKGFFIEP 382
Query: 722 TIFSKVNDHMRIA 760
T+FS V D MRIA
Sbjct: 383 TVFSNVTDDMRIA 395
>sp|Q63639|AL1A2_RAT Retinal dehydrogenase 2 (RalDH2) (RALDH 2) (RALDH(II))
(Retinaldehyde-specific dehydrogenase type 2) (Aldehyde
dehydrogenase family 1 member A2)
Length = 499
Score = 354 bits (909), Expect = 1e-97
Identities = 166/253 (65%), Positives = 205/253 (81%), Gaps = 1/253 (0%)
Frame = +2
Query: 5 IPIRGNYLGFTRHEAVGICGQIIPWNFPLLMQAWKLGPALCMGNTVVMKTAEQTPLTANY 184
IP+ G+Y FTRHE +G+CGQIIPWNFPLLM WK+ PALC GNTVV+K AEQTPL+A Y
Sbjct: 143 IPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALY 202
Query: 185 VASLIAEAGFPPGVVNIVPGMGPVAGAALVSHPNVDKIAFTGSTEVGRIISSECNKNNIK 364
+ +LI EAGFPPGVVNI+PG GP AGAA+ SH +DKIAFTGSTEVG++I ++N+K
Sbjct: 203 MGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLK 262
Query: 365 RLTLELGGKSPNIVLADADFDHAVKSSHFALFFNNGQCCCAGSRIYVEEKIYDKFVEAMV 544
R+TLELGGKSPNI+ ADAD D+AV+ +H +FFN GQCC AGSRI+VEE IY++FV+ V
Sbjct: 263 RVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVKRSV 322
Query: 545 AEAKKKIVGNPFD-DVDQGPQVDKDQLNKIIDLINSGKSEGAQLCTGGKQLGDKGYFVEP 721
AK++IVG+PFD +QGPQ+DK Q NKI++LI SG +EGA+L GGK LG KG+F+EP
Sbjct: 323 ERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKGLGRKGFFIEP 382
Query: 722 TIFSKVNDHMRIA 760
T+FS V D MRIA
Sbjct: 383 TVFSNVTDDMRIA 395
>sp|Q62148|AL1A2_MOUSE Retinal dehydrogenase 2 (RalDH2) (RALDH 2) (RALDH(II))
(Retinaldehyde-specific dehydrogenase type 2) (Aldehyde
dehydrogenase family 1 member A2)
Length = 499
Score = 354 bits (908), Expect = 2e-97
Identities = 165/253 (65%), Positives = 205/253 (81%), Gaps = 1/253 (0%)
Frame = +2
Query: 5 IPIRGNYLGFTRHEAVGICGQIIPWNFPLLMQAWKLGPALCMGNTVVMKTAEQTPLTANY 184
IP+ G+Y FTRHE +G+CGQIIPWNFPLLM WK+ PALC GNTVV+K AEQTPL+A Y
Sbjct: 143 IPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALY 202
Query: 185 VASLIAEAGFPPGVVNIVPGMGPVAGAALVSHPNVDKIAFTGSTEVGRIISSECNKNNIK 364
+ +LI EAGFPPGVVNI+PG GP AGAA+ SH +DKIAFTGSTEVG++I ++N+K
Sbjct: 203 MGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLK 262
Query: 365 RLTLELGGKSPNIVLADADFDHAVKSSHFALFFNNGQCCCAGSRIYVEEKIYDKFVEAMV 544
R+TLELGGKSPNI+ ADAD D+AV+ +H +FFN GQCC AGSRI+VEE IY++FV+ V
Sbjct: 263 RVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVKRSV 322
Query: 545 AEAKKKIVGNPFD-DVDQGPQVDKDQLNKIIDLINSGKSEGAQLCTGGKQLGDKGYFVEP 721
AK++IVG+PFD +QGPQ+DK Q NK+++LI SG +EGA+L GGK LG KG+F+EP
Sbjct: 323 ERAKRRIVGSPFDPTTEQGPQIDKKQYNKVLELIQSGVAEGAKLECGGKGLGRKGFFIEP 382
Query: 722 TIFSKVNDHMRIA 760
T+FS V D MRIA
Sbjct: 383 TVFSNVTDDMRIA 395
>sp|P00352|AL1A1_HUMAN Retinal dehydrogenase 1 (RalDH1) (RALDH 1) (Aldehyde dehydrogenase
family 1 member A1) (Aldehyde dehydrogenase, cytosolic)
(ALHDII) (ALDH-E1)
Length = 501
Score = 347 bits (890), Expect = 2e-95
Identities = 168/253 (66%), Positives = 202/253 (79%), Gaps = 1/253 (0%)
Frame = +2
Query: 5 IPIRGNYLGFTRHEAVGICGQIIPWNFPLLMQAWKLGPALCMGNTVVMKTAEQTPLTANY 184
IPI GN+ +TRHE +G+CGQIIPWNFPL+M WK+GPAL GNTVV+K AEQTPLTA +
Sbjct: 145 IPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALH 204
Query: 185 VASLIAEAGFPPGVVNIVPGMGPVAGAALVSHPNVDKIAFTGSTEVGRIISSECNKNNIK 364
VASLI EAGFPPGVVNIVPG GP AGAA+ SH ++DK+AFTGSTEVG++I K+N+K
Sbjct: 205 VASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLK 264
Query: 365 RLTLELGGKSPNIVLADADFDHAVKSSHFALFFNNGQCCCAGSRIYVEEKIYDKFVEAMV 544
R+TLELGGKSP IVLADAD D+AV+ +H +F++ GQCC A SRI+VEE IYD+FV V
Sbjct: 265 RVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSV 324
Query: 545 AEAKKKIVGNPF-DDVDQGPQVDKDQLNKIIDLINSGKSEGAQLCTGGKQLGDKGYFVEP 721
AKK I+GNP V QGPQ+DK+Q +KI+DLI SGK EGA+L GG G+KGYFV+P
Sbjct: 325 ERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQP 384
Query: 722 TIFSKVNDHMRIA 760
T+FS V D MRIA
Sbjct: 385 TVFSNVTDEMRIA 397
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,343,236
Number of Sequences: 369166
Number of extensions: 1652095
Number of successful extensions: 4891
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4531
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)