Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_H07-2
(378 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96EY1|DNJA3_HUMAN DnaJ homolog subfamily A member 3, mi... 60 2e-09
sp|Q99M87|DNJA3_MOUSE DnaJ homolog subfamily A member 3, mi... 56 3e-08
sp|Q24331|TID_DROVI Tumorous imaginal discs protein, mitoch... 48 6e-06
sp|Q27237|TID_DROME Tumorous imaginal discs protein, mitoch... 37 0.018
sp|Q8TA83|DNJ10_CAEEL DnaJ homolog dnj-10 (DnaJ domain prot... 34 0.091
sp|Q5HNW7|DNAJ_STAEQ Chaperone protein dnaJ 33 0.20
sp|P45555|DNAJ_STAAU Chaperone protein dnaJ 32 0.35
sp|O69269|DNAJ_BACSH Chaperone protein dnaJ 32 0.35
sp|P63972|DNAJ_STAAW Chaperone protein dnaJ >gi|62900218|sp... 32 0.35
sp|Q6GGC1|DNAJ_STAAR Chaperone protein dnaJ 32 0.35
>sp|Q96EY1|DNJA3_HUMAN DnaJ homolog subfamily A member 3, mitochondrial precursor
(Tumorous imaginal discs protein Tid56 homolog) (DnaJ
protein Tid-1) (hTid-1)
Length = 480
Score = 60.1 bits (144), Expect = 2e-09
Identities = 27/56 (48%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Frame = -2
Query: 377 YGYGDHYLNIKIQPTKRLTETQRALLLALAEQD-ESAGMINGVTMTANGKQAIDDT 213
YGYGDHY++IKI+ KRLT Q++L+L+ AE + + G +NGVT+T++G +D +
Sbjct: 399 YGYGDHYIHIKIRVPKRLTSRQQSLILSYAEDETDVEGTVNGVTLTSSGGSTMDSS 454
>sp|Q99M87|DNJA3_MOUSE DnaJ homolog subfamily A member 3, mitochondrial precursor
(Tumorous imaginal discs protein Tid56 homolog) (DnaJ
protein Tid-1) (mTid-1)
Length = 480
Score = 55.8 bits (133), Expect = 3e-08
Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = -2
Query: 377 YGYGDHYLNIKIQPTKRLTETQRALLLALAEQD-ESAGMINGVTMTANGKQAIDDT 213
YGYGDHY++IKI+ KRL+ Q+ L+L+ AE + + G +NGVT T+ G + +D +
Sbjct: 399 YGYGDHYIHIKIRVPKRLSSRQQNLILSYAEDETDVEGTVNGVTHTSTGGRTMDSS 454
>sp|Q24331|TID_DROVI Tumorous imaginal discs protein, mitochondrial precursor
(Lethal(2)tumorous imaginal discs protein) (TID58)
Length = 529
Score = 48.1 bits (113), Expect = 6e-06
Identities = 22/51 (43%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -2
Query: 377 YGYGDHYLNIKIQPTKRLTETQRALLLALAE-QDESAGMINGVTMTANGKQ 228
+G+GDHY++IKI+ K+L++ QRALL A AE ++++ G I+G+ +G +
Sbjct: 406 HGHGDHYVHIKIEVPKKLSQEQRALLEAYAELEEDTPGQIHGMAQRKDGSK 456
>sp|Q27237|TID_DROME Tumorous imaginal discs protein, mitochondrial precursor
(Lethal(2)tumorous imaginal discs protein) (TID56)
(TID50)
Length = 520
Score = 36.6 bits (83), Expect = 0.018
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Frame = -2
Query: 377 YGYGDHYLNIKI--QPTKRLTETQRALLLALAE-QDESAGMINGVTMTANG-KQA 225
+G+GDHY+++KI K+L + + AL+ A AE ++++ G I+G+ +G KQA
Sbjct: 390 HGHGDHYVHVKITVPSAKKLDKKRLALIEAYAELEEDTPGQIHGIANRKDGSKQA 444
>sp|Q8TA83|DNJ10_CAEEL DnaJ homolog dnj-10 (DnaJ domain protein 10)
Length = 456
Score = 34.3 bits (77), Expect = 0.091
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = -2
Query: 377 YGYGDHYLNIKIQPTKRLTETQRALLLALAEQDE-SAGMINGVTMTANGKQAIDDTDQFL 201
YG GD Y++IK+ K LT Q+ ++LA A ++ G I G+ ++ ++
Sbjct: 355 YGNGDQYMHIKVTVPKYLTAEQKQIMLAWAATEQLKDGTIKGLEKNQKTEEKETKKNEEK 414
Query: 200 LSQ-IRMVLKQHENTDANQPTNKQDQQQHENPSEKLKK 90
S+ K+ A + Q++E EK+K+
Sbjct: 415 KSEGASESQKRRSEPVAENAETIDENQENEGFFEKIKR 452
>sp|Q5HNW7|DNAJ_STAEQ Chaperone protein dnaJ
Length = 373
Score = 33.1 bits (74), Expect = 0.20
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 377 YGYGDHYLNIKIQPTKRLTETQRALLLALAEQDESAGMINGVTMTANGKQAIDDTDQF 204
YGYGD ++NIK+ +L + Q+ LL AE ING + D +F
Sbjct: 319 YGYGDLFVNIKVVTPTKLNDRQKELLKEFAE-------INGENINEQSSNFKDRAKRF 369
>sp|P45555|DNAJ_STAAU Chaperone protein dnaJ
Length = 379
Score = 32.3 bits (72), Expect = 0.35
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 377 YGYGDHYLNIKIQPTKRLTETQRALLLALAE 285
YGYGD Y++IK+ +LT+ Q+ L+ A+
Sbjct: 325 YGYGDLYVDIKVVTPTKLTDRQKELMKEFAQ 355
>sp|O69269|DNAJ_BACSH Chaperone protein dnaJ
Length = 368
Score = 32.3 bits (72), Expect = 0.35
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 377 YGYGDHYLNIKIQPTKRLTETQRALLLALAE 285
YG G+ Y+ +K+ ++LTE Q+ LL AE
Sbjct: 314 YGMGNQYVTVKVMTPEKLTEKQKQLLREFAE 344
>sp|P63972|DNAJ_STAAW Chaperone protein dnaJ
sp|Q6G8Y8|DNAJ_STAAS Chaperone protein dnaJ
sp|P63971|DNAJ_STAAN Chaperone protein dnaJ
sp|P63970|DNAJ_STAAM Chaperone protein dnaJ
sp|Q5HFI1|DNAJ_STAAC Chaperone protein dnaJ
Length = 379
Score = 32.3 bits (72), Expect = 0.35
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 377 YGYGDHYLNIKIQPTKRLTETQRALLLALAE 285
YGYGD Y++IK+ +LT+ Q+ L+ A+
Sbjct: 325 YGYGDLYVDIKVVTPTKLTDRQKELMKEFAQ 355
>sp|Q6GGC1|DNAJ_STAAR Chaperone protein dnaJ
Length = 379
Score = 32.3 bits (72), Expect = 0.35
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 377 YGYGDHYLNIKIQPTKRLTETQRALLLALAE 285
YGYGD Y++IK+ +LT+ Q+ L+ A+
Sbjct: 325 YGYGDLYVDIKVVTPTKLTDRQKELMKEFAQ 355
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,602,645
Number of Sequences: 369166
Number of extensions: 537070
Number of successful extensions: 1899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1890
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)