Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_G23
(850 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10058|YAM3_SCHPO Hypothetical protein C1F5.03c in chrom... 84 6e-16
sp|P38758|YHG9_YEAST Hypothetical 57.0 kDa protein in SOD2-... 75 3e-13
sp|Q43497|MDAR_LYCES Monodehydroascorbate reductase (MDAR) ... 36 0.12
sp|Q40977|MDAR_PEA Monodehydroascorbate reductase (MDAR) (A... 35 0.20
sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedl... 35 0.20
sp|O32159|YURR_BACSU Hypothetical oxidoreductase yurR 33 1.00
sp|Q81JG0|FABH1_BACAN 3-oxoacyl-[acyl-carrier-protein] synt... 31 5.0
sp|Q9HJ14|RPOK_THEAC DNA-directed RNA polymerase subunit K 31 5.0
sp|Q7NTK7|KCY_CHRVO Cytidylate kinase (CK) (Cytidine monoph... 31 5.0
sp|Q81GM0|FABH1_BACCR 3-oxoacyl-[acyl-carrier-protein] synt... 31 5.0
>sp|Q10058|YAM3_SCHPO Hypothetical protein C1F5.03c in chromosome I
Length = 382
Score = 83.6 bits (205), Expect = 6e-16
Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 16/221 (7%)
Frame = +1
Query: 235 VHPKKLSHKFLEEARRLTNNATQIIRGTVIGIGFDE-------SGLLP-----AVKTVRL 378
VHP K H EEA ++ N +++G V+ + +E P L
Sbjct: 138 VHPYKFCHAIYEEASKVAN--VTLVKGHVLSVDENEVEYRLIGDDYAPDEEEEITSAEEL 195
Query: 379 RSGRILDADAVLIAMGPWSHKAMNWFPTGSIP--QISSHRAHSVVIRAPKNFNNPADCIF 552
+ ++A +++A GPW+ + IP +IS R HS+ I P N A +F
Sbjct: 196 HTIHSMEATHIIVAAGPWTPQL--------IPNLRISGARIHSITIDLPIKLNGNA--VF 245
Query: 553 LQFKNNIGT-TCPEIYSRPDGTVYVSGFGDNAELPDRASEVKIERWRCSQLREVAYATCS 729
+ GT PE Y+R D +YV G D+ LP+ +S+ K+++ +C+ +++ A
Sbjct: 246 SEITYKDGTIAAPEFYARED-ELYVCGEFDDEPLPELSSDTKVDQDKCALIKQCANHFHQ 304
Query: 730 NLEASEILAEQACFLPLS-PDGVPVIGAISSVRGAFVATAH 849
+ S + QAC+LP+S G PVIG I S +VA AH
Sbjct: 305 IIRDSPVKVRQACYLPISNATGAPVIGKIGS--SIYVAAAH 343
>sp|P38758|YHG9_YEAST Hypothetical 57.0 kDa protein in SOD2-RPL27A intergenic region
Length = 518
Score = 74.7 bits (182), Expect = 3e-13
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 32/237 (13%)
Frame = +1
Query: 235 VHPKKLSHKFLEEARRLTNNATQIIRGTVIGIGFDESGL------LPAVKTVRLRSG--- 387
+HP K +H L +A + A ++ G V+G+ DE LP+V R S
Sbjct: 248 LHPYKFTHFILSKA--METGAVDLLLGKVVGLKCDEMDCVHSLKYLPSVVKNRRNSRGHA 305
Query: 388 -------------------RILDADAVLIAMGPWSHKAMNWFPTGSIPQISSHRAHSVVI 510
I D ++++MGPW+ K + P IS RAHSV I
Sbjct: 306 ENPDIKLGTIFNDENAKPIEINDIQQIVLSMGPWTSKILKDCP------ISGLRAHSVTI 359
Query: 511 RAPKNFNNPADCIFLQFKNNIGTTCPEIYSRPDGTVYVSGFGDN-AELPDRASEVKIERW 687
+ + +P + N+ PE+Y+R D VYV G GD +P+ + +V++
Sbjct: 360 KPSEKTVSPYAILAELKVNDREFFSPEMYARKD-EVYVCGEGDTLVNIPESSDDVEVVSE 418
Query: 688 RCSQLREVAYATCSNLEASEILAEQACFLP---LSPDGVPVIGAISSVRGAFVATAH 849
+C +L L +L +QACFLP + P+IG ++V+ ++A+ H
Sbjct: 419 KCDELYHYVSKLSPTLSKGHLLRKQACFLPVLNVPTSSGPLIGE-TNVKDLYIASGH 474
>sp|Q43497|MDAR_LYCES Monodehydroascorbate reductase (MDAR) (Ascorbate free radical
reductase) (AFR reductase)
Length = 433
Score = 36.2 bits (82), Expect = 0.12
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +1
Query: 289 NNATQIIRGTVIGIGFDESGLLPAVKTVRLRSGRILDADAVLIAMG 426
N II+GTV +GFD VK V+L+ GR+L+AD V++ +G
Sbjct: 217 NKGVNIIKGTV-AVGFDTHPN-GEVKEVKLKDGRVLEADIVVVGVG 260
>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase (MDAR) (Ascorbate free radical
reductase) (AFR reductase)
Length = 433
Score = 35.4 bits (80), Expect = 0.20
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 289 NNATQIIRGTV-IGIGFDESGLLPAVKTVRLRSGRILDADAVLIAMG 426
N II+GTV +G + G VK V+L+ GR+L+AD V++ +G
Sbjct: 216 NKGINIIKGTVAVGFTANSDG---EVKEVKLKDGRVLEADIVIVGVG 259
>sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme (MDAR seedling)
(Ascorbate free radical reductase seedling) (AFR
reductase seedling)
Length = 434
Score = 35.4 bits (80), Expect = 0.20
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +1
Query: 304 IIRGTV-IGIGFDESGLLPAVKTVRLRSGRILDADAVLIAMG 426
II+GTV +G D +G VK V+L+ GR+L+AD V++ +G
Sbjct: 222 IIKGTVAVGFTVDTNG---EVKEVKLKDGRVLEADIVVVGVG 260
>sp|O32159|YURR_BACSU Hypothetical oxidoreductase yurR
Length = 372
Score = 33.1 bits (74), Expect = 1.00
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 8/175 (4%)
Frame = +1
Query: 340 ESGLLPAVKTVRLRSGRILDADAVLIAMGPWSHKAMNWFPTGSIPQISSHRAHSVVIRAP 519
E+G + V+T + ADAV++ G W+++ + P G Q+S +A
Sbjct: 181 ENGTVTGVQT----DTKQFAADAVIVTAGAWANEILK--PLGIHFQVSFQKAQ------- 227
Query: 520 KNFNNPADCIFLQFKNNIGTTCPEIYSRPDGTVYVSGFGDNAELPDRAS--------EVK 675
+ F+ T P Y+ F DN + A+ +++
Sbjct: 228 ----------IMHFEMTDADTGSWPVVMPPSDQYILSF-DNGRIVAGATHENDAGLDDLR 276
Query: 676 IERWRCSQLREVAYATCSNLEASEILAEQACFLPLSPDGVPVIGAISSVRGAFVA 840
+ ++ A A L + + + F P +P +PV+GA+ +V+G + A
Sbjct: 277 VTAGGQHEVLSKALAVAPGLADAAAVETRVGFRPFTPGFLPVVGAVPNVQGLYAA 331
>sp|Q81JG0|FABH1_BACAN 3-oxoacyl-[acyl-carrier-protein] synthase III protein 1
(Beta-ketoacyl-ACP synthase III 1) (KAS III 1)
Length = 310
Score = 30.8 bits (68), Expect = 5.0
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +1
Query: 241 PKKLSHKFLEEARRLTNNATQIIRGTVIGIGFDESGLLPAVKTVRLRSGRILDAD-AVLI 417
P + + + +E AR N + + T+ G + +P L++GRI D D +L+
Sbjct: 234 PHQANIRIMESARERLNLPQEKMSMTIEKFGNTSASSIPIAMVEELQNGRIQDGDLIILV 293
Query: 418 AMG---PWSHKAMNW 453
G W A+ W
Sbjct: 294 GFGGGLTWGAVALRW 308
>sp|Q9HJ14|RPOK_THEAC DNA-directed RNA polymerase subunit K
Length = 61
Score = 30.8 bits (68), Expect = 5.0
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +1
Query: 361 VKTVRLRSGRILDADAVLIAMGPWSHKAMNWFPTGSIPQISSHRAHSVVIRAPKNFNNPA 540
+K + RI+ A A+ IAMG V+I PKN +P
Sbjct: 1 MKYTKFEKARIIGARALQIAMGA-----------------------PVIIDVPKNIIDPV 37
Query: 541 DCIFLQFKNNI 573
D L+F+NN+
Sbjct: 38 DIAMLEFENNV 48
>sp|Q7NTK7|KCY_CHRVO Cytidylate kinase (CK) (Cytidine monophosphate kinase) (CMP kinase)
Length = 222
Score = 30.8 bits (68), Expect = 5.0
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 289 NNATQIIRGTVIGIGFDESGLLPAVKTVRLRSGR 390
N+A+Q IR IGIG + G LPAV+ L+ R
Sbjct: 79 NDASQDIRAEEIGIGASKVGALPAVRAALLQRQR 112
>sp|Q81GM0|FABH1_BACCR 3-oxoacyl-[acyl-carrier-protein] synthase III protein 1
(Beta-ketoacyl-ACP synthase III 1) (KAS III 1)
Length = 310
Score = 30.8 bits (68), Expect = 5.0
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +1
Query: 241 PKKLSHKFLEEARRLTNNATQIIRGTVIGIGFDESGLLPAVKTVRLRSGRILDAD-AVLI 417
P + + + +E AR N + + T+ G + +P L++GRI D D +L+
Sbjct: 234 PHQANIRIMESARERLNLPQEKMSMTIEKFGNTSASSIPIAMVEELQNGRIQDGDLIILV 293
Query: 418 AMG---PWSHKAMNW 453
G W A+ W
Sbjct: 294 GFGGGLTWGAVALRW 308
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,465,442
Number of Sequences: 369166
Number of extensions: 1639396
Number of successful extensions: 3824
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3819
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)