Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_G13
(510 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20050|HOP1_YEAST Meiosis-specific protein HOP1 55 7e-08
sp|Q8U4J3|RFCS_PYRFU Replication factor C small subunit (RF... 32 0.87
sp|Q9N5L4|PME4_CAEEL Poly(ADP-ribose) glycohydrolase pme-4 ... 31 1.9
sp|P32776|TFB1_YEAST RNA polymerase II transcription factor... 29 5.6
sp|Q09296|YQO6_CAEEL Hypothetical protein EEED8.6 in chromo... 29 5.6
sp|O57852|RFCS_PYRHO Replication factor C small subunit (RF... 29 5.6
sp|O13290|DYHC_SCHPO Dynein heavy chain, cytosolic (DYHC) 29 7.3
sp|O75923|DYSF_HUMAN Dysferlin (Dystrophy associated fer-1-... 28 9.6
>sp|P20050|HOP1_YEAST Meiosis-specific protein HOP1
Length = 605
Score = 55.5 bits (132), Expect = 7e-08
Identities = 36/139 (25%), Positives = 73/139 (52%), Gaps = 5/139 (3%)
Frame = +2
Query: 11 KCPGAAKVINWV-RGCFDALDRHYLKTVIIGFYTDFEDPDTVIESYSFKFTYGHDS---V 178
K A +++W+ +G F ++ LK + +G + EDP ++E+Y F F Y ++ +
Sbjct: 83 KSAQADLLLDWLEKGVFKSIRLKCLKALSLGIF--LEDPTDLLENYIFSFDYDEENNVNI 140
Query: 179 SIKIDNKETESELNAVINNDEVPEKIKKATIS-LLRTMILAGNTQDPLPEKVIVTMKLLY 355
++ + + S+ NA N+ + + + L+R I+ + +PLP+K +TM+L++
Sbjct: 141 NVNLSGNKKGSK-NADPENETISLLDSRRMVQQLMRRFIIITQSLEPLPQKKFLTMRLMF 199
Query: 356 YDEVTPDNYEPNGFRSCDY 412
D V D Y+P F+ +
Sbjct: 200 NDNVDED-YQPELFKDATF 217
>sp|Q8U4J3|RFCS_PYRFU Replication factor C small subunit (RFC small subunit) (Clamp
loader small subunit) (PfuRFC small subunit) [Contains:
Pfu RFC intein]
Length = 852
Score = 32.0 bits (71), Expect = 0.87
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 227 INNDEVPEKIKKATISLLRTMILAGNTQDPLPEKVIVTMKLLYYDEVT 370
++N E+ EKI+K + L+ ++ G ++ + + + LY+DE+T
Sbjct: 504 VDNVEILEKIRKIELELIEEILSDGKLKEGIAYLIFLFQNELYWDEIT 551
>sp|Q9N5L4|PME4_CAEEL Poly(ADP-ribose) glycohydrolase pme-4 (Poly ADP-ribose metabolism
enzyme-4)
Length = 485
Score = 30.8 bits (68), Expect = 1.9
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = +2
Query: 47 RGCFDALDRHYLKTVIIGFYTDFEDPDTVIESYSFKFTYGHDSVSIKIDNKETES---EL 217
R C L YLKT G Y+ FED FK +G+ + D +S ++
Sbjct: 58 RNCDQNLFNEYLKTYKNGGYSQFED-------LLFKI-WGYSEEKERFDLPALKSFYRKM 109
Query: 218 NAVINNDEVPEKIKKATISLLRTMILAGNTQDPLPEKV 331
+ ++ DEV EK L R + + + + LPEK+
Sbjct: 110 SEIVGEDEVLEK-------LARLVRITKSACEVLPEKI 140
>sp|P32776|TFB1_YEAST RNA polymerase II transcription factor B subunit 1 (RNA polymerase
II transcription factor B p73 subunit) (RNA polymerase
II transcription factor B 73 kDa subunit)
Length = 642
Score = 29.3 bits (64), Expect = 5.6
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 176 VSIKIDNKETESELNAVINNDEVPEKIKKATISLLR 283
+S+ +DN + +LN V+ N+EV KI K I+ ++
Sbjct: 473 LSLVMDNLINKLDLNQVVPNNEVSNKINKRVITAIK 508
>sp|Q09296|YQO6_CAEEL Hypothetical protein EEED8.6 in chromosome II
Length = 477
Score = 29.3 bits (64), Expect = 5.6
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 92 IIGFYTDFEDPDTVIESYSFKFTYGHDSVSIKIDNKETESELNAVINNDEVPEKIKKATI 271
I+ F FE PD V +Y +TYG ++I E ES + D + + ++K +
Sbjct: 123 ILSFAFIFESPDPVQFAYCIPYTYG----QMQIWLNELESRKYPFFHRDLLVQTVQKRRV 178
Query: 272 SLL 280
L+
Sbjct: 179 DLI 181
>sp|O57852|RFCS_PYRHO Replication factor C small subunit (RFC small subunit) (Clamp
loader small subunit) [Contains: Pho RFC intein]
Length = 855
Score = 29.3 bits (64), Expect = 5.6
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +2
Query: 200 ETESELNAVINNDEVPEKIKKATISLLRTMILAGNTQDPLPEKVIVTMKLLYYDEVT 370
+T E NAV N E+ E+I+K + L+ ++ ++ + + ++ LY+DE+T
Sbjct: 499 KTILESNAV--NVEILERIRKIELELIEEILSDEKLKEGIAYLIFLSQNELYWDEIT 553
>sp|O13290|DYHC_SCHPO Dynein heavy chain, cytosolic (DYHC)
Length = 4196
Score = 28.9 bits (63), Expect = 7.3
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 12/44 (27%)
Frame = +2
Query: 182 IKIDNKETES------------ELNAVINNDEVPEKIKKATISL 277
+KI N E+ES E+++++ N ++P+ IKK T+SL
Sbjct: 3894 LKIINDESESRMPTIVYLMENCEIDSLLQNAKIPQNIKKLTVSL 3937
>sp|O75923|DYSF_HUMAN Dysferlin (Dystrophy associated fer-1-like protein) (Fer-1-like
protein 1)
Length = 2080
Score = 28.5 bits (62), Expect = 9.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 203 TESELNAVINNDEVPEKIKKATISLLRTMILAGNTQDPLPEKVI 334
TE+ L + + E+P +++A LLR LA Q+ LP+ VI
Sbjct: 752 TEAALALKLGHSELPAALEQAEDWLLRLRALAEEPQNSLPDIVI 795
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,031,924
Number of Sequences: 369166
Number of extensions: 908826
Number of successful extensions: 2348
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2345
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)