Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_G08
(333 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36168|YK76_YEAST Hypothetical 137.5 kDa protein in MPL1... 28 6.6
sp|Q00362|2ABA_YEAST Protein phosphatase PP2A regulatory su... 28 6.6
sp|Q16663|CCL15_HUMAN Small inducible cytokine A15 precurso... 28 8.7
sp|Q11181|YPC4_CAEEL Hypothetical protein C05D10.4 in chrom... 28 8.7
>sp|P36168|YK76_YEAST Hypothetical 137.5 kDa protein in MPL1-PPC1 intergenic region
Length = 1195
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 258 HDLKFEYVHPLSTCARPTEPVRPTLSAFL*VIL*TN*NSLKC 133
HDL E+ + + T RP P T A+L + N SLKC
Sbjct: 652 HDLLAEFFNDIDTLRRPILPSMLTNEAWLETLKFLNMTSLKC 693
>sp|Q00362|2ABA_YEAST Protein phosphatase PP2A regulatory subunit B (PR55) (Cell division
control protein 55)
Length = 526
Score = 28.1 bits (61), Expect = 6.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 327 KVLLDSFDNKIDCTTQFMPAFVIHDLKFEYVHPLSTCARPTEP--VRPTLSAFL*VIL*T 154
+V+L N C +F+ F HD +F+Y+ L + E +RPT + +L T
Sbjct: 48 RVVLFERSNSRHCEYKFLTEFQSHDAEFDYLKSLEIEEKINEIKWLRPTQRSHF--LLST 105
Query: 153 N*NSLKCFKNFK 118
N ++K +K ++
Sbjct: 106 NDKTIKLWKVYE 117
>sp|Q16663|CCL15_HUMAN Small inducible cytokine A15 precursor (CCL15) (Macrophage
inflammatory protein 5) (MIP-5) (Chemokine CC-2) (HCC-2)
(NCC-3) (MIP-1 delta) (Leukotactin-1) (LKN-1) (Mrp-2b)
Length = 113
Score = 27.7 bits (60), Expect = 8.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 330 NKVLLDSFDNKIDCTTQFMPAFVIHDLKFEYVHPLSTCARP 208
N V+L+SF DC T ++ + L Y S C++P
Sbjct: 40 NPVVLNSFHFAADCCTSYISQSIPCSLMKSYFETSSECSKP 80
>sp|Q11181|YPC4_CAEEL Hypothetical protein C05D10.4 in chromosome III
Length = 597
Score = 27.7 bits (60), Expect = 8.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +2
Query: 8 LSHTLSGR*SVFGKIHKK-----GIYRFKDINKNRYREIEQ 115
+SH SGR S+F K KK G + F+D NK+ I +
Sbjct: 184 MSHDTSGRGSIFSKSSKKPLFFMGNWTFRDRNKSARPSISE 224
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,543,977
Number of Sequences: 369166
Number of extensions: 607251
Number of successful extensions: 1300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)