Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_G01
(807 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 458 e-129
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 456 e-128
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 456 e-128
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 456 e-128
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 455 e-128
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 454 e-127
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 454 e-127
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 453 e-127
sp|P02550|TBA_PIG Tubulin alpha chain 453 e-127
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 452 e-127
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 458 bits (1178), Expect = e-129
Identities = 221/225 (98%), Positives = 224/225 (99%)
Frame = +2
Query: 5 NLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPV 184
NLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APV
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 185 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 364
ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 335
Query: 365 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 544
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 545 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 679
DLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 456 bits (1173), Expect = e-128
Identities = 219/225 (97%), Positives = 224/225 (99%)
Frame = +2
Query: 5 NLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPV 184
NLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APV
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 185 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 364
ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATI
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 335
Query: 365 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 544
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 545 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 679
DLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 456 bits (1173), Expect = e-128
Identities = 219/225 (97%), Positives = 224/225 (99%)
Frame = +2
Query: 5 NLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPV 184
NLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APV
Sbjct: 177 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 236
Query: 185 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 364
ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATI
Sbjct: 237 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 296
Query: 365 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 544
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 297 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 356
Query: 545 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 679
DLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DSV
Sbjct: 357 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 401
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 456 bits (1172), Expect = e-128
Identities = 219/225 (97%), Positives = 224/225 (99%)
Frame = +2
Query: 5 NLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPV 184
NLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APV
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 185 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 364
ISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLYRGDVVPKDVNAAIATI
Sbjct: 276 ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATI 335
Query: 365 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 544
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 545 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 679
DLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 455 bits (1171), Expect = e-128
Identities = 219/225 (97%), Positives = 224/225 (99%)
Frame = +2
Query: 5 NLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPV 184
NLDIERP+YTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APV
Sbjct: 216 NLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 185 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 364
ISAEKAYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 335
Query: 365 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 544
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 545 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 679
DLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 454 bits (1169), Expect = e-127
Identities = 219/225 (97%), Positives = 222/225 (98%)
Frame = +2
Query: 5 NLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPV 184
NLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL T+APV
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV 275
Query: 185 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 364
ISAEKAYHE LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI
Sbjct: 276 ISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 335
Query: 365 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 544
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 545 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 679
DLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 454 bits (1169), Expect = e-127
Identities = 219/224 (97%), Positives = 222/224 (99%)
Frame = +2
Query: 5 NLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPV 184
NLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL T+APV
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV 275
Query: 185 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 364
ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 335
Query: 365 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 544
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 545 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 676
DLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 453 bits (1165), Expect = e-127
Identities = 217/224 (96%), Positives = 223/224 (99%)
Frame = +2
Query: 5 NLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPV 184
NLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APV
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 185 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 364
ISAEKAYHEQL+V+EITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATI
Sbjct: 276 ISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 335
Query: 365 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 544
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 545 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 676
DLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 453 bits (1165), Expect = e-127
Identities = 217/225 (96%), Positives = 223/225 (99%)
Frame = +2
Query: 5 NLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPV 184
NLDIERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPR HFPLAT+APV
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPV 275
Query: 185 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 364
ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATI
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 335
Query: 365 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 544
KTKRTIQFVDWCPTGFKVGINY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 545 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 679
DLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 452 bits (1164), Expect = e-127
Identities = 217/224 (96%), Positives = 223/224 (99%)
Frame = +2
Query: 5 NLDIERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPV 184
NLDIERPTYTNLNRL+ QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APV
Sbjct: 216 NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 185 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 364
ISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATI
Sbjct: 276 ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 335
Query: 365 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 544
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 545 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 676
DLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVGADS
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADS 439
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,775,006
Number of Sequences: 369166
Number of extensions: 1363988
Number of successful extensions: 4047
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3807
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)