Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_F20
(602 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromo... 114 2e-25
sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase 50 4e-06
sp|Q9YCB6|RGYR1_AERPE Reverse gyrase 1 [Includes: Helicase ... 32 0.95
sp|P18871|ADA2A_PIG Alpha-2A adrenergic receptor (Alpha-2A ... 31 2.1
sp|Q8U260|SYFB_PYRFU Phenylalanyl-tRNA synthetase beta chai... 31 2.8
sp|P22909|ADA2A_RAT Alpha-2A adrenergic receptor (Alpha-2A ... 31 2.8
sp|P08913|ADA2A_HUMAN Alpha-2A adrenergic receptor (Alpha-2... 30 4.7
sp|Q9UQ05|KCNH4_HUMAN Potassium voltage-gated channel subfa... 30 4.7
sp|Q9R1T9|KCNH4_RAT Potassium voltage-gated channel subfami... 30 4.7
sp|O55134|PCD12_MOUSE Protocadherin 12 precursor (Vascular ... 29 8.0
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
Length = 252
Score = 114 bits (285), Expect = 2e-25
Identities = 50/95 (52%), Positives = 69/95 (72%)
Frame = +1
Query: 271 RPHISLITRQKLLDLGWDVLLHPPYSPDLAPSDFHLFRSLQNSLNGIAFSNEGLIKEQLE 450
+PH++ T QKL DLGW VL HPPYSPDLAP+D+HLF SL + + F +E +K +L
Sbjct: 158 KPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELS 217
Query: 451 RFFAEKNVDFYLRGIMKLPQRWQKVIDQNGEYIID 555
FF+ ++ DF+ RGIM LP +WQ+V+D NGEY+ +
Sbjct: 218 TFFSSRSPDFFSRGIMMLPSKWQQVVDTNGEYLCE 252
>sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase
Length = 273
Score = 50.1 bits (118), Expect = 4e-06
Identities = 36/100 (36%), Positives = 46/100 (46%)
Frame = +1
Query: 241 KGMVFHHDNARPHISLITRQKLLDLGWDVLLHPPYSPDLAPSDFHLFRSLQNSLNGIAFS 420
+G VF DN H SL R +L P SPDL P + HL+ L+ L GI S
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQRRHVHLLDWPSQSPDLNPIE-HLWEELERRLGGIRAS 228
Query: 421 NEGLIKEQLERFFAEKNVDFYLRGIMKLPQRWQKVIDQNG 540
N QLE + + + I +P+R Q VID NG
Sbjct: 229 NADAKFNQLENAWKAIPMSVIHKLIDSMPRRCQAVIDANG 268
>sp|Q9YCB6|RGYR1_AERPE Reverse gyrase 1 [Includes: Helicase ; Topoisomerase ]
Length = 1376
Score = 32.3 bits (72), Expect = 0.95
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Frame = +1
Query: 313 LGWDVLLH-PPYSPDLAPSDFH--LFRSLQNSLNGIAFSNEGLIKEQLERFFAEKNVDFY 483
+GWDV L PY+PD+ +FH +++ +L+ ++ L+ Q+ R ++ + F
Sbjct: 808 IGWDVALALRPYAPDIKRLEFHEVTKKAILEALSNPRSFDDNLVDAQVVRRVEDRWIGFT 867
Query: 484 LRGIMKL---PQRWQKVIDQNGE 543
L ++ P+ ++V+++ GE
Sbjct: 868 LSPLLWCDFWPRYCKRVLEEYGE 890
>sp|P18871|ADA2A_PIG Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor) (Alpha-2A
adrenoreceptor) (Alpha-2AAR)
Length = 450
Score = 31.2 bits (69), Expect = 2.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 2 PNSARGEKEAGLKKMKRWRGKQKQIFTRKRFCF 100
P + GE+ G+ K RWRG+Q + KRF F
Sbjct: 345 PATGAGEERGGVAKASRWRGRQNR---EKRFTF 374
>sp|Q8U260|SYFB_PYRFU Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 556
Score = 30.8 bits (68), Expect = 2.8
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 346 SPDLAPSDFHLFRSLQNSLNGIAFSNEGLIKEQLERFFAEKNV 474
+PDL P +F + L+G+ SNE IKE LER E +
Sbjct: 275 TPDLTPKEFEVSFEYIRKLSGLELSNEE-IKELLERMMYEVEI 316
>sp|P22909|ADA2A_RAT Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor) (Alpha-2A
adrenoreceptor) (Alpha-2AAR) (CA2-47) (Alpha-2D
adrenergic receptor)
Length = 450
Score = 30.8 bits (68), Expect = 2.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 8 SARGEKEAGLKKMKRWRGKQKQIFTRKRFCF 100
S +GE+ AG K RWRG+Q + KRF F
Sbjct: 347 SGQGEERAGGAKASRWRGRQNR---EKRFTF 374
>sp|P08913|ADA2A_HUMAN Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor) (Alpha-2A
adrenoreceptor) (Alpha-2AAR subtype C10)
Length = 450
Score = 30.0 bits (66), Expect = 4.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 2 PNSARGEKEAGLKKMKRWRGKQKQIFTRKRFCF 100
P + GE+ G K RWRG+Q + KRF F
Sbjct: 345 PAAGPGEERVGAAKASRWRGRQNR---EKRFTF 374
>sp|Q9UQ05|KCNH4_HUMAN Potassium voltage-gated channel subfamily H member 4 (Voltage-gated
potassium channel subunit Kv12.3) (Ether-a-go-go-like
potassium channel 1) (ELK channel 1) (ELK1)
(Brain-specific eag-like channel 2) (BEC2)
Length = 1017
Score = 30.0 bits (66), Expect = 4.7
Identities = 24/84 (28%), Positives = 36/84 (42%)
Frame = -3
Query: 585 HLFNITKTILIYYVFPVLINYLLPSLW*LHYSSQIEVYVFLCKEPLKLLFDKALITKRYT 406
++FNIT T L++ + V + LL L L SQ V + L + Y
Sbjct: 323 YIFNITVTSLVHLLKTVRLLRLLRLLQKLERYSQCSAVVLTLLMSVFALLAHWMACIWYV 382
Query: 405 IQ*VLQGAKQMEIGRGKVWTIGWM 334
I G ++ME +W IGW+
Sbjct: 383 I-----GRREMEANDPLLWDIGWL 401
>sp|Q9R1T9|KCNH4_RAT Potassium voltage-gated channel subfamily H member 4 (Voltage-gated
potassium channel subunit Kv12.3) (Ether-a-go-go-like
potassium channel 1) (ELK channel 1) (rElk1)
(Brain-specific eag-like channel 2) (BEC2)
Length = 1017
Score = 30.0 bits (66), Expect = 4.7
Identities = 24/84 (28%), Positives = 36/84 (42%)
Frame = -3
Query: 585 HLFNITKTILIYYVFPVLINYLLPSLW*LHYSSQIEVYVFLCKEPLKLLFDKALITKRYT 406
++FNIT T L++ + V + LL L L SQ V + L + Y
Sbjct: 324 YVFNITVTSLVHLLKTVRLLRLLRLLQKLERYSQCSAVVLTLLMSVFALLAHWMACVWYV 383
Query: 405 IQ*VLQGAKQMEIGRGKVWTIGWM 334
I G ++ME +W IGW+
Sbjct: 384 I-----GRREMEANDPLLWDIGWL 402
>sp|O55134|PCD12_MOUSE Protocadherin 12 precursor (Vascular cadherin-2) (Vascular
endothelial cadherin-2) (VE-cadherin-2) (VE-cad-2)
Length = 1180
Score = 29.3 bits (64), Expect = 8.0
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 262 DNARPHISLITRQKLLDLGWDVLLHPPYSPDLAPSDFHLFRSLQNSLNGIAFSNEGLIKE 441
D RP +++ L++ GWD L P+ L P+ L+R+L+N N+G + E
Sbjct: 789 DEVRPSHKDTSKETLMEAGWDSCLEAPF--HLTPT---LYRTLRNQ------GNQGELAE 837
Query: 442 QLE 450
E
Sbjct: 838 SQE 840
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,757,889
Number of Sequences: 369166
Number of extensions: 1572494
Number of successful extensions: 4128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4128
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)