Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_F01
(393 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42036|RS143_ARATH 40S ribosomal protein S14-3 164 6e-41
sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2 164 8e-41
sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1 164 8e-41
sp|P48150|RS14_CAEEL 40S ribosomal protein S14 164 8e-41
sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1) 163 1e-40
sp|P13471|RS14_RAT 40S ribosomal protein S14 162 2e-40
sp|P62264|RS14_MOUSE 40S ribosomal protein S14 >gi|50403752... 162 2e-40
sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2) 162 3e-40
sp|Q08699|RS14_PODCA 40S ribosomal protein S14 160 1e-39
sp|O22584|RS14_LUPLU 40S ribosomal protein S14 159 1e-39
>sp|P42036|RS143_ARATH 40S ribosomal protein S14-3
Length = 150
Score = 164 bits (415), Expect = 6e-41
Identities = 78/109 (71%), Positives = 92/109 (84%)
Frame = +3
Query: 6 HIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGIT 185
H+FASFNDTF+HVTD++G ET+VR+TGGMKVKADRDESSPYAAMLAAQDVA+RCK+LGIT
Sbjct: 31 HVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGIT 90
Query: 186 AVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 332
A+HV++RATGG K++T SGMKIGRIEDVTPIP D+T
Sbjct: 91 AIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
>sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2
Length = 150
Score = 164 bits (414), Expect = 8e-41
Identities = 79/109 (72%), Positives = 92/109 (84%)
Frame = +3
Query: 6 HIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGIT 185
HIFASFNDTF+HVTD++G ET+VR+TGGMKVKADRDESSPYAAMLAAQDVA+RCK+LGIT
Sbjct: 31 HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGIT 90
Query: 186 AVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 332
A+HV++RATGG K++T SGMKIGRIEDVTPIP D+T
Sbjct: 91 AMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
>sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1
Length = 150
Score = 164 bits (414), Expect = 8e-41
Identities = 79/109 (72%), Positives = 92/109 (84%)
Frame = +3
Query: 6 HIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGIT 185
HIFASFNDTF+HVTD++G ET+VR+TGGMKVKADRDESSPYAAMLAAQDVA+RCK+LGIT
Sbjct: 31 HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGIT 90
Query: 186 AVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 332
A+HV++RATGG K++T SGMKIGRIEDVTPIP D+T
Sbjct: 91 AMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
>sp|P48150|RS14_CAEEL 40S ribosomal protein S14
Length = 152
Score = 164 bits (414), Expect = 8e-41
Identities = 79/109 (72%), Positives = 91/109 (83%)
Frame = +3
Query: 6 HIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGIT 185
HIFASFNDTFVH+TD++G ETIVRVTGGMKVKADRDESSPYAAMLAAQDVA+RCKQLGI
Sbjct: 33 HIFASFNDTFVHITDISGRETIVRVTGGMKVKADRDESSPYAAMLAAQDVADRCKQLGIN 92
Query: 186 AVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 332
A+H+++RATGGT+++T +GMKIGRIEDVTPIP D T
Sbjct: 93 ALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141
>sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1)
Length = 149
Score = 163 bits (412), Expect = 1e-40
Identities = 77/109 (70%), Positives = 92/109 (84%)
Frame = +3
Query: 6 HIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGIT 185
HIFASFNDTF+HVTD++G ET+VR+TGGMKVKADRDESSPYAAMLAAQDVA+RCK+LGIT
Sbjct: 30 HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGIT 89
Query: 186 AVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 332
A+H+++RATGG K++T SGMKIGRIEDVTP+P D+T
Sbjct: 90 ALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 138
>sp|P13471|RS14_RAT 40S ribosomal protein S14
Length = 151
Score = 162 bits (410), Expect = 2e-40
Identities = 79/109 (72%), Positives = 91/109 (83%)
Frame = +3
Query: 6 HIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGIT 185
HIFASFNDTFVHVTD++G ETI RVTGGMKVKADRDESSPYAAMLAAQDVA+RCK+LGIT
Sbjct: 32 HIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGIT 91
Query: 186 AVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 332
A+H+++RATGG +++T SGMKIGRIEDVTPIP D+T
Sbjct: 92 ALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14
sp|P62263|RS14_HUMAN 40S ribosomal protein S14
sp|P62265|RS14_CRIGR 40S ribosomal protein S14
Length = 151
Score = 162 bits (410), Expect = 2e-40
Identities = 79/109 (72%), Positives = 91/109 (83%)
Frame = +3
Query: 6 HIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGIT 185
HIFASFNDTFVHVTD++G ETI RVTGGMKVKADRDESSPYAAMLAAQDVA+RCK+LGIT
Sbjct: 32 HIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGIT 91
Query: 186 AVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 332
A+H+++RATGG +++T SGMKIGRIEDVTPIP D+T
Sbjct: 92 ALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
>sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2)
Length = 150
Score = 162 bits (409), Expect = 3e-40
Identities = 76/109 (69%), Positives = 92/109 (84%)
Frame = +3
Query: 6 HIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGIT 185
HIFASFNDTF+HVTD++G ET+VR+TGGMKVKADRDESSPYAAMLA+QDVA+RCK+LGIT
Sbjct: 31 HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGIT 90
Query: 186 AVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 332
A+H+++RATGG K++T SGMKIGRIEDVTP+P D+T
Sbjct: 91 ALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 139
>sp|Q08699|RS14_PODCA 40S ribosomal protein S14
Length = 151
Score = 160 bits (404), Expect = 1e-39
Identities = 79/109 (72%), Positives = 89/109 (81%)
Frame = +3
Query: 6 HIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGIT 185
HIFASFNDTFVHVTD++G ETI RVTGGMKVKADRDESSPYAAMLAAQDVA RCK++GIT
Sbjct: 32 HIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAVRCKEIGIT 91
Query: 186 AVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 332
A+HV++RATGG +++T SGMKIGRIEDVTPIP D T
Sbjct: 92 ALHVKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCT 140
>sp|O22584|RS14_LUPLU 40S ribosomal protein S14
Length = 150
Score = 159 bits (403), Expect = 1e-39
Identities = 77/108 (71%), Positives = 90/108 (83%)
Frame = +3
Query: 9 IFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGITA 188
IFASFNDTF+HVTD++G ET+VR+TGGMKVKADRDESSPYAAMLAAQDVA RCK+LGITA
Sbjct: 32 IFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITA 91
Query: 189 VHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 332
+H+++RATGG K++T SGMKIGRIEDVTPIP D+T
Sbjct: 92 LHIKLRATGGNKTKTPGRGAQSALRALARSGMKIGRIEDVTPIPSDST 139
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,045,548
Number of Sequences: 369166
Number of extensions: 472609
Number of successful extensions: 1589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)