Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_E23
(814 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O00423|EMAL1_HUMAN Echinoderm microtubule-associated pro... 270 5e-72
sp|O95834|EMAL2_HUMAN Echinoderm microtubule-associated pro... 254 3e-67
sp|Q26613|EMAP_STRPU 77 kDa echinoderm microtubule-associat... 247 2e-65
sp|Q9Y1C1|EMAP_LYTVA 77 kDa echinoderm microtubule-associat... 241 2e-63
sp|Q9HC35|EMAL4_HUMAN Echinoderm microtubule-associated pro... 237 3e-62
sp|Q9VUI3|EMAL_DROME Echinoderm microtubule-associated prot... 142 1e-33
sp|Q9N9X3|CTX80_EUPOC Ciliary WD repeat-containing protein ... 94 3e-19
sp|O45487|EMAL_CAEEL Echinoderm microtubule-associated prot... 79 2e-14
sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein H... 68 3e-11
sp|P56093|TUP1_CANAL Transcriptional repressor TUP1 62 1e-09
>sp|O00423|EMAL1_HUMAN Echinoderm microtubule-associated protein-like 1 (EMAP-1) (HuEMAP-1)
Length = 717
Score = 270 bits (689), Expect = 5e-72
Identities = 128/269 (47%), Positives = 174/269 (64%)
Frame = +2
Query: 8 SARGAHEGPIFXXXXXXXXXXXXXXXKDRKIKEWSSLLVNIGVEKILPESHGAIRMLSQG 187
+ +GAHEG I KDRK+ WS + +I PE G IR +++G
Sbjct: 356 AVQGAHEGGISPLCMLRDGTLVSGGGKDRKLISWSGNYQKLRKTEI-PEQFGPIRTVAEG 414
Query: 188 PGGMILVGSTRNSILQGNAQSMEFRSIVEGHVEEMWGLATHPKQHRFVSVGYDKFLCCWD 367
G +IL+G+TRN +LQG S +F I +GH +E+WGLA H + +F++ G+DK WD
Sbjct: 415 KGDVILIGTTRNFVLQGTL-SGDFTPITQGHTDELWGLAIHASKPQFLTCGHDKHATLWD 473
Query: 368 SLTRQLIWRKEFTENLHSVCFHPLSEIIVVGCCAGRWMVIDTITREMVCVHTDGNEQIEC 547
++ + +W K + S FHP ++ VG GRW V DT T+++V VHTDGNEQ+
Sbjct: 474 AVGHRPVWDKIIEDPAQSSGFHPSGSVVAVGTLTGRWFVFDTETKDLVTVHTDGNEQLSV 533
Query: 548 IQFSTDGRSLAIGSRDNSIYMYNVSDNGYKYSKNGKCTGHSSFITHIDWSTNGQFLRSNS 727
+++S DG LAIGS DN IY+Y VSDNG KY++ GKC+GHSSFITH+DWS N QFL SNS
Sbjct: 534 MRYSPDGNFLAIGSHDNCIYIYGVSDNGRKYTRVGKCSGHSSFITHLDWSVNSQFLVSNS 593
Query: 728 GDYELLYWSSSTCRQVQAIDQVRDIDWAT 814
GDYE+LYW S C+QV +++ RDI+WAT
Sbjct: 594 GDYEILYWVPSACKQVVSVETTRDIEWAT 622
>sp|O95834|EMAL2_HUMAN Echinoderm microtubule-associated protein-like 2 (EMAP-2) (HuEMAP-2)
Length = 649
Score = 254 bits (648), Expect = 3e-67
Identities = 117/266 (43%), Positives = 169/266 (63%)
Frame = +2
Query: 17 GAHEGPIFXXXXXXXXXXXXXXXKDRKIKEWSSLLVNIGVEKILPESHGAIRMLSQGPGG 196
GAH+G +F +DR++ W S + E +PE G +R +++G G
Sbjct: 291 GAHDGGVFGLCALRDGTLVSGGGRDRRVVLWGSDYSKLQ-EVEVPEDFGPVRTVAEGHGD 349
Query: 197 MILVGSTRNSILQGNAQSMEFRSIVEGHVEEMWGLATHPKQHRFVSVGYDKFLCCWDSLT 376
+ VG+TRNSILQG+ + F +V+GHVEE+WGLATHP + +FV+ G DK + W S +
Sbjct: 350 TLYVGTTRNSILQGSVHT-GFSLLVQGHVEELWGLATHPSRAQFVTCGQDKLVHLWSSDS 408
Query: 377 RQLIWRKEFTENLHSVCFHPLSEIIVVGCCAGRWMVIDTITREMVCVHTDGNEQIECIQF 556
Q +W + + S FHP ++ VG GRW+++DT T ++V +HTDGNEQI + F
Sbjct: 409 HQPLWSRIIEDPARSAGFHPSGSVLAVGTVTGRWLLLDTETHDLVAIHTDGNEQISVVSF 468
Query: 557 STDGRSLAIGSRDNSIYMYNVSDNGYKYSKNGKCTGHSSFITHIDWSTNGQFLRSNSGDY 736
S DG LA+GS DN +Y+Y V G K S+ GKC+GHSSFITH+DW+ + +NSGDY
Sbjct: 469 SPDGAYLAVGSHDNLVYVYTVDQGGRKVSRLGKCSGHSSFITHLDWAQDSSCFVTNSGDY 528
Query: 737 ELLYWSSSTCRQVQAIDQVRDIDWAT 814
E+LYW +TC+Q+ + D VR+++WAT
Sbjct: 529 EILYWDPATCKQITSADAVRNMEWAT 554
>sp|Q26613|EMAP_STRPU 77 kDa echinoderm microtubule-associated protein
Length = 686
Score = 247 bits (631), Expect = 2e-65
Identities = 116/266 (43%), Positives = 168/266 (63%)
Frame = +2
Query: 17 GAHEGPIFXXXXXXXXXXXXXXXKDRKIKEWSSLLVNIGVEKILPESHGAIRMLSQGPGG 196
GAHEG IF KD+K+ W++ V ++ E+ G +R L +G G
Sbjct: 328 GAHEGGIFSLCVMNDGQILSGGGKDKKVILWTADYQQSEVTQVT-EATGPVRTLCKGKGE 386
Query: 197 MILVGSTRNSILQGNAQSMEFRSIVEGHVEEMWGLATHPKQHRFVSVGYDKFLCCWDSLT 376
VG+TRN+IL GN EF ++V+ H EE+WGLA HP Q F++ GYDK + WD
Sbjct: 387 DFYVGTTRNAILSGNMGG-EFNTLVQAHTEELWGLALHPTQGLFLTCGYDKNVIMWDFEQ 445
Query: 377 RQLIWRKEFTENLHSVCFHPLSEIIVVGCCAGRWMVIDTITREMVCVHTDGNEQIECIQF 556
+ +W K + S FHP ++ +G +GRW+ +D +++++ VHTDG EQ + I++
Sbjct: 446 HKPMWNKLMEDGCQSAGFHPSGAVVAIGMTSGRWVALDVESQDLITVHTDGKEQHDIIRY 505
Query: 557 STDGRSLAIGSRDNSIYMYNVSDNGYKYSKNGKCTGHSSFITHIDWSTNGQFLRSNSGDY 736
S DG LA+ S DN IY+Y+V++ G KYSK GKC+GHSSF+THIDWS + L+SNSGDY
Sbjct: 506 SPDGNFLAVASHDNYIYIYSVTEEGRKYSKVGKCSGHSSFVTHIDWSADSTKLQSNSGDY 565
Query: 737 ELLYWSSSTCRQVQAIDQVRDIDWAT 814
ELL+W ++TC+Q+ + RD++WAT
Sbjct: 566 ELLFWDAATCKQIVISKETRDVEWAT 591
>sp|Q9Y1C1|EMAP_LYTVA 77 kDa echinoderm microtubule-associated protein
Length = 664
Score = 241 bits (615), Expect = 2e-63
Identities = 114/266 (42%), Positives = 163/266 (61%)
Frame = +2
Query: 17 GAHEGPIFXXXXXXXXXXXXXXXKDRKIKEWSSLLVNIGVEKILPESHGAIRMLSQGPGG 196
GAHEG IF KD+K+ W++ ++ PE+ G +R L +G G
Sbjct: 306 GAHEGGIFSLCVMNDGQILSGGGKDKKVVLWTADYQQSETTQV-PEATGPVRTLCKGKGE 364
Query: 197 MILVGSTRNSILQGNAQSMEFRSIVEGHVEEMWGLATHPKQHRFVSVGYDKFLCCWDSLT 376
VG+TRN+IL G+ +F ++V+ H EE+WGLA HP Q F++ GYDK + WD
Sbjct: 365 NFYVGTTRNAILSGDMGG-DFTTLVQAHTEELWGLALHPTQGMFLTCGYDKNVILWDFEQ 423
Query: 377 RQLIWRKEFTENLHSVCFHPLSEIIVVGCCAGRWMVIDTITREMVCVHTDGNEQIECIQF 556
W K + S FHP E++ +G +GRW+ +D + ++ VHTDG EQ + I++
Sbjct: 424 HTQRWNKFMEDGCQSAGFHPSGEVVAIGMTSGRWVALDVESGDLYTVHTDGKEQHDIIRY 483
Query: 557 STDGRSLAIGSRDNSIYMYNVSDNGYKYSKNGKCTGHSSFITHIDWSTNGQFLRSNSGDY 736
S +G LA+ S DN IY+Y+V + G KYSK G+C+GHSSF+THIDWS + L+SNSGDY
Sbjct: 484 SPNGEYLAVASHDNYIYIYSVKETGRKYSKVGRCSGHSSFVTHIDWSADSTKLQSNSGDY 543
Query: 737 ELLYWSSSTCRQVQAIDQVRDIDWAT 814
ELL+W + TC+Q+ + RDI+WAT
Sbjct: 544 ELLFWDAETCKQIVGSKETRDIEWAT 569
>sp|Q9HC35|EMAL4_HUMAN Echinoderm microtubule-associated protein-like 4 (EMAP-4)
(Restrictedly overexpressed proliferation-associated
protein) (Ropp 120)
Length = 981
Score = 237 bits (604), Expect = 3e-62
Identities = 113/266 (42%), Positives = 166/266 (62%), Gaps = 1/266 (0%)
Frame = +2
Query: 20 AHEGPIFXXXXXXXXXXXXXXXKDRKIKEWSSLLVNIGVEKILPESHGAIRMLSQGPGGM 199
AH+G +F KDRKI W L N E +P+ +G IR +++G
Sbjct: 507 AHDGSVFTLCQMRNGMLLTGGGKDRKIILWDHDL-NPEREIEVPDQYGTIRAVAEGKADQ 565
Query: 200 ILVGSTRNSILQGNAQSMEFRSIVEGHVEEMWGLATHPKQHRFVSVGYDKFLCCWDSLTR 379
LVG++RN IL+G F+ V+GH +E+WGLATHP + ++ D+ +C W+S+
Sbjct: 566 FLVGTSRNFILRGTFND-GFQIEVQGHTDELWGLATHPFKDLLLTCAQDRQVCLWNSMEH 624
Query: 380 QLIWRKEFTENLHSVCFHPLSEIIVVGCCAGRWMVIDTITREMVCVHTDGNEQIECIQFS 559
+L W + E H FHP ++ +G +GRW V+D TR++V +HTDGNEQ+ +++S
Sbjct: 625 RLEWTRLVDEPGHCADFHPSGTVVAIGTHSGRWFVLDAETRDLVSIHTDGNEQLSVMRYS 684
Query: 560 TDGRSLAIGSRDNSIYMYNVSDNGYKYSKNGKCTGHSSFITHIDWSTNGQFLRSNSGDYE 739
DG LA+GS DN IY+Y VS+NG KYS+ G+CTGHSS+ITH+DWS + +++ SNSGDYE
Sbjct: 685 IDGTFLAVGSHDNFIYLYVVSENGRKYSRYGRCTGHSSYITHLDWSPDNKYIMSNSGDYE 744
Query: 740 LLYWS-SSTCRQVQAIDQVRDIDWAT 814
+LYW + C+ ++ +DIDW T
Sbjct: 745 ILYWDIPNGCKLIRNRSDCKDIDWTT 770
>sp|Q9VUI3|EMAL_DROME Echinoderm microtubule-associated protein-like CG13466
Length = 819
Score = 142 bits (357), Expect = 1e-33
Identities = 83/251 (33%), Positives = 136/251 (54%), Gaps = 8/251 (3%)
Frame = +2
Query: 86 KDRKIKEWSSLLVNIGVEKI----LPESHGAIRML-SQGPG---GMILVGSTRNSILQGN 241
KDRKI W SL +KI LPE+ G +R + Q PG G I VG+TRN+IL+G+
Sbjct: 477 KDRKIAAWDSLQ---NYKKIADTKLPEAAGGVRTIYPQRPGRNDGNIYVGTTRNNILEGS 533
Query: 242 AQSMEFRSIVEGHVEEMWGLATHPKQHRFVSVGYDKFLCCWDSLTRQLIWRKEFTENLHS 421
Q F +V GH ++WGLA HP + + G+DK + W +LIW + +
Sbjct: 534 LQR-RFTQVVFGHGRQLWGLAAHPDDELYATAGHDKHVALWRK--NKLIWTIQTGYECVA 590
Query: 422 VCFHPLSEIIVVGCCAGRWMVIDTITREMVCVHTDGNEQIECIQFSTDGRSLAIGSRDNS 601
+ FHP + G G +VI+ ++ + C+ ++ G +A+GS++ S
Sbjct: 591 LAFHPFGTL-AAGSTEGHLLVINCENGAVMLTLRVCGSPLNCVAYNQVGDMIAMGSQNGS 649
Query: 602 IYMYNVSDNGYKYSKNGKCTGHSSFITHIDWSTNGQFLRSNSGDYELLYWSSSTCRQVQA 781
IY++ VS +G+ Y K K G S +TH+DWS +G F+++ + D++LL+W + + ++
Sbjct: 650 IYLFRVSRDGFSYKKVNKIRG-SQPLTHLDWSMDGNFVQTVTIDFDLLFWDAKSLSPERS 708
Query: 782 IDQVRDIDWAT 814
++D+ W T
Sbjct: 709 PIAMKDVKWLT 719
>sp|Q9N9X3|CTX80_EUPOC Ciliary WD repeat-containing protein ctxp80
Length = 716
Score = 94.4 bits (233), Expect = 3e-19
Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 28/222 (12%)
Frame = +2
Query: 191 GGMILVGSTRNSILQGNAQSMEFRSIVEGHVE-EMWGLATHPKQHRFVSVGYDKFLCCWD 367
GG I+ G +IL+ +++ + + I++ H + E WGLA K FV+ G D + WD
Sbjct: 396 GGKIVAGLRNGTILEIDSKGTK-KEIMKSHSDGEAWGLAVADKD-TFVTSGDDNKIYVWD 453
Query: 368 SLTRQLIWRKE---------------FTENLHSVCFHPL------SEIIVVGCCAGRWMV 484
R+ E TE S C + + + VG GR +
Sbjct: 454 LKNRKSTALAEICNEDKNSKAGGASSLTEYAPSKCGRSVAVNVGGNGNVAVGHNDGRVTI 513
Query: 485 ------IDTITREMVCVHTDGNEQIECIQFSTDGRSLAIGSRDNSIYMYNVSDNGYKYSK 646
ID +T+ + TD E IEC+ +S DG LA+GS DN+IY+Y+ +D YSK
Sbjct: 514 RGGVKSIDKVTKTL----TDSGEWIECMAYSPDGSMLAVGSHDNNIYIYSSAD----YSK 565
Query: 647 NGKCTGHSSFITHIDWSTNGQFLRSNSGDYELLYWSSSTCRQ 772
G H+SFI +DWS++G ++RS G +ELL+++ +Q
Sbjct: 566 LGTLKAHNSFIVSLDWSSDGTYIRSVCGAHELLFFTVEDFKQ 607
>sp|O45487|EMAL_CAEEL Echinoderm microtubule-associated protein-like elp-1
Length = 891
Score = 78.6 bits (192), Expect = 2e-14
Identities = 56/245 (22%), Positives = 120/245 (48%), Gaps = 2/245 (0%)
Frame = +2
Query: 86 KDRKIKEWSSL-LVNIGVEKILPESHGAIRMLSQGPGGMILVGSTRNSILQGNAQ-SMEF 259
KDR + EW LV LP+ G R++ Q G +++G++ N++L GN + S
Sbjct: 562 KDRMVSEWDLQDLVRTRRPIELPDEKGFPRVILQN-GSELIIGTSSNTLLFGNIENSTNL 620
Query: 260 RSIVEGHVEEMWGLATHPKQHRFVSVGYDKFLCCWDSLTRQLIWRKEFTENLHSVCFHPL 439
S++EG + L T ++ ++ L W+ + +++ + K+F +++ V
Sbjct: 621 TSLIEGDPGNLTFLLTC-SSNQLITSSQCGTLRIWNHIDKKVEFSKKFIDSVECVDVDVT 679
Query: 440 SEIIVVGCCAGRWMVIDTITREMVCVHTDGNEQIECIQFSTDGRSLAIGSRDNSIYMYNV 619
+ I++G AG W+V++ ++ + +G I ++F+ G + A+ ++D + +Y +
Sbjct: 680 NTHIILGFAAGLWIVMNITKQQTIQEKKEGTAPITAVKFAPSGATFAVATKDPHLTIYRI 739
Query: 620 SDNGYKYSKNGKCTGHSSFITHIDWSTNGQFLRSNSGDYELLYWSSSTCRQVQAIDQVRD 799
D + + I +D+S++ Q+LR S LL+W+ + ++ V+D
Sbjct: 740 -DASKNLLVIARIHHIPAPIVALDFSSDSQYLRGQSIGAHLLFWTKA--GEICDGTSVKD 796
Query: 800 IDWAT 814
+ W +
Sbjct: 797 VKWGS 801
>sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein HET-E-1
Length = 1356
Score = 67.8 bits (164), Expect = 3e-11
Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 9/237 (3%)
Frame = +2
Query: 89 DRKIKEWSSLLVNIGVEKILPESHGA-IRMLSQGPGGM-ILVGSTRNSILQGNAQSMEFR 262
D+ IK W + G E HG ++ + P G + GS ++I +A S
Sbjct: 1030 DKTIKIWDTAS---GTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCT 1086
Query: 263 SIVEGHVEEMWGLATHPKQHRFVSVGYDKFLCCWDSLTRQLIWRKEFTEN-LHSVCFHPL 439
+EGH + +W +A P R S D + WD+ + E +HSV F P
Sbjct: 1087 QTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPD 1146
Query: 440 SEIIVVGCCAGRWMVIDTITREMVCVHTDGNEQIECIQFSTDGRSLAIGSRDNSIYMYNV 619
+ + G G + D + ++ + FS DG+ +A GS D +I +++
Sbjct: 1147 GQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDT 1206
Query: 620 SDNGYKYSKNGKCT----GHSSFITHIDWSTNGQFLRSNSGDYELLYW--SSSTCRQ 772
+ +G CT GH ++ + +S +GQ + S S D + W +S TC Q
Sbjct: 1207 A--------SGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDNTIKIWDTASGTCTQ 1255
Score = 58.5 bits (140), Expect = 2e-08
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 9/216 (4%)
Frame = +2
Query: 152 ESHGA--IRMLSQGPGGMILVGSTRNSILQGNAQSMEFRSIVEGHVEEMWGLATHPKQHR 325
E HG+ + + G + GS +I + S +EGH +W +A P + R
Sbjct: 838 EGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRER 897
Query: 326 FVSVGYDKFLCCWDSLTRQLIWRKE-FTENLHSVCFHPLSEIIVVGCCAGRWMVIDTITR 502
S DK + WD+ + E + SV F P + + G + D +
Sbjct: 898 VASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASG 957
Query: 503 EMVCVHTDGNEQIECIQFSTDGRSLAIGSRDNSIYMYNVSDNGYKYSKNGKCT----GHS 670
+ + FS DG+ +A GS D +I +++ + +G CT GH
Sbjct: 958 TCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTA--------SGTCTQTLEGHG 1009
Query: 671 SFITHIDWSTNGQFLRSNSGDYELLYW--SSSTCRQ 772
+ + +S +GQ + S S D + W +S TC Q
Sbjct: 1010 GSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQ 1045
Score = 57.4 bits (137), Expect = 5e-08
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 9/216 (4%)
Frame = +2
Query: 152 ESHGA-IRMLSQGPGGM-ILVGSTRNSILQGNAQSMEFRSIVEGHVEEMWGLATHPKQHR 325
E HG+ + ++ P G + GS +I + S +EGH +W +A P R
Sbjct: 964 EGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQR 1023
Query: 326 FVSVGYDKFLCCWDSLTRQLIWRKEFTEN-LHSVCFHPLSEIIVVGCCAGRWMVIDTITR 502
S DK + WD+ + E + SV F P + + G + D ++
Sbjct: 1024 VASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSG 1083
Query: 503 EMVCVHTDGNEQIECIQFSTDGRSLAIGSRDNSIYMYNVSDNGYKYSKNGKCT----GHS 670
+ + + FS DG+ +A GS D +I +++ + +G CT GH
Sbjct: 1084 TCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAA--------SGTCTQTLEGHG 1135
Query: 671 SFITHIDWSTNGQFLRSNSGDYELLYW--SSSTCRQ 772
++ + +S +GQ + S S D + W +S TC Q
Sbjct: 1136 GWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQ 1171
Score = 56.2 bits (134), Expect = 1e-07
Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 9/237 (3%)
Frame = +2
Query: 89 DRKIKEWSSLLVNIGVEKILPESHGA-IRMLSQGPGGM-ILVGSTRNSILQGNAQSMEFR 262
D+ IK W + G E HG ++ ++ P G + GS ++I +A S
Sbjct: 904 DKTIKIWDAAS---GTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCT 960
Query: 263 SIVEGHVEEMWGLATHPKQHRFVSVGYDKFLCCWDSLTRQLIWRKE-FTENLHSVCFHPL 439
+EGH + +A P R S DK + WD+ + E ++ SV F P
Sbjct: 961 QTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPD 1020
Query: 440 SEIIVVGCCAGRWMVIDTITREMVCVHTDGNEQIECIQFSTDGRSLAIGSRDNSIYMYNV 619
+ + G + DT + ++ + FS DG+ +A GS D++I +++
Sbjct: 1021 GQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIWD- 1079
Query: 620 SDNGYKYSKNGKCT----GHSSFITHIDWSTNGQFLRSNSGDYELLYW--SSSTCRQ 772
+ +G CT GH + + +S +GQ + S S D + W +S TC Q
Sbjct: 1080 -------AVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQ 1129
Score = 54.7 bits (130), Expect = 3e-07
Identities = 56/237 (23%), Positives = 97/237 (40%), Gaps = 9/237 (3%)
Frame = +2
Query: 89 DRKIKEWSSLLVNIGVEKILPESHG-AIRMLSQGPGGM-ILVGSTRNSILQGNAQSMEFR 262
D+ IK W + G E HG ++ ++ P G + GS +I + S
Sbjct: 988 DKTIKIWDTAS---GTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCT 1044
Query: 263 SIVEGHVEEMWGLATHPKQHRFVSVGYDKFLCCWDSLTRQLIWRKE-FTENLHSVCFHPL 439
+EGH + + P R S D + WD+++ E +++ SV F P
Sbjct: 1045 QTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPD 1104
Query: 440 SEIIVVGCCAGRWMVIDTITREMVCVHTDGNEQIECIQFSTDGRSLAIGSRDNSIYMYNV 619
+ + G G + D + + + FS DG+ +A GS D +I +++
Sbjct: 1105 GQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDA 1164
Query: 620 SDNGYKYSKNGKCT----GHSSFITHIDWSTNGQFLRSNSGDYELLYW--SSSTCRQ 772
+ +G CT GH ++ + +S +GQ + S S D + W +S TC Q
Sbjct: 1165 A--------SGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQ 1213
Score = 53.1 bits (126), Expect = 9e-07
Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 9/237 (3%)
Frame = +2
Query: 89 DRKIKEWSSLLVNIGVEKILPESHG-AIRMLSQGPGG-MILVGSTRNSILQGNAQSMEFR 262
D+ IK W + G + + E HG ++ ++ P + GS +I +A S
Sbjct: 862 DKTIKIWDTAS-GTGTQTL--EGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCT 918
Query: 263 SIVEGHVEEMWGLATHPKQHRFVSVGYDKFLCCWDSLTRQLIWRKE-FTENLHSVCFHPL 439
+EGH + +A P R S D + WD+ + E ++ SV F P
Sbjct: 919 QTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPD 978
Query: 440 SEIIVVGCCAGRWMVIDTITREMVCVHTDGNEQIECIQFSTDGRSLAIGSRDNSIYMYNV 619
+ + G + DT + + + FS DG+ +A GS D +I +++
Sbjct: 979 GQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDT 1038
Query: 620 SDNGYKYSKNGKCT----GHSSFITHIDWSTNGQFLRSNSGDYELLYWS--SSTCRQ 772
+ +G CT GH ++ + +S +GQ + S S D+ + W S TC Q
Sbjct: 1039 A--------SGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCTQ 1087
Score = 52.8 bits (125), Expect = 1e-06
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 7/175 (4%)
Frame = +2
Query: 269 VEGHVEEMWGLATHPKQHRFVSVGYDKFLCCWDSLTRQLIWRKE-FTENLHSVCFHPLSE 445
+EGH + +A R S DK + WD+ + E ++ SV F P E
Sbjct: 837 LEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRE 896
Query: 446 IIVVGCCAGRWMVIDTITREMVCVHTDGNEQIECIQFSTDGRSLAIGSRDNSIYMYNVSD 625
+ G + D + +++ + FS DG+ +A GS D++I +++ +
Sbjct: 897 RVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAA- 955
Query: 626 NGYKYSKNGKCT----GHSSFITHIDWSTNGQFLRSNSGDYELLYW--SSSTCRQ 772
+G CT GH S + + +S +GQ + S SGD + W +S TC Q
Sbjct: 956 -------SGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQ 1003
>sp|P56093|TUP1_CANAL Transcriptional repressor TUP1
Length = 514
Score = 62.4 bits (150), Expect = 1e-09
Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 12/211 (5%)
Frame = +2
Query: 167 IRMLSQGPGGMILVGSTRNSILQ-GNAQSMEFRSIVEGHVEEMWGLATHPKQHRFVSVGY 343
IR + P G +L + +++ + + I+ GH ++++ L P R VS
Sbjct: 260 IRSVCFSPDGKLLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDGDRLVSGSG 319
Query: 344 DKFLCCWDSLTRQLIWRKEFTENLHSVCFHPLSEIIVVGCCAGRWMVIDTITREMVCVHT 523
D+ + WD T Q + + +V P ++I G V D+ T +V
Sbjct: 320 DRSVRIWDLRTSQCSLTLSIEDGVTTVAVSPDGKLIAAGSLDRTVRVWDSTTGFLVERLD 379
Query: 524 DGNE-------QIECIQFSTDGRSLAIGSRDNSIYMYNVSDNGYKYSKNGKC----TGHS 670
GNE + + FS +G +A GS D ++ ++++ K K C GH
Sbjct: 380 SGNENGNGHEDSVYSVAFSNNGEQIASGSLDRTVKLWHLEG---KSDKKSTCEVTYIGHK 436
Query: 671 SFITHIDWSTNGQFLRSNSGDYELLYWSSST 763
F+ + + + +++ S S D +++W ++
Sbjct: 437 DFVLSVCCTPDNEYILSGSKDRGVIFWDQAS 467
Score = 32.0 bits (71), Expect = 2.1
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Frame = +2
Query: 515 VHT-DGNEQIECIQFSTDGRSLAIGSRDNSIYMYNVS---------DNGYKYSKNGKCTG 664
VH+ D + + C++FS DG+ +A G + + ++NV+ D +K+ T
Sbjct: 196 VHSLDHSSVVCCVRFSRDGKFIATGC-NKTTQVFNVTTGELVAKLIDESSNENKDDNTTA 254
Query: 665 HSS-FITHIDWSTNGQFLRSNSGDYELLYWSSSTCRQVQAI 784
+I + +S +G+ L + + D + W ST R ++ +
Sbjct: 255 SGDLYIRSVCFSPDGKLLATGAEDKLIRIWDLSTKRIIKIL 295
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,825,608
Number of Sequences: 369166
Number of extensions: 2246690
Number of successful extensions: 6508
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6290
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)