Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_E21
(667 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9YHY6|XCAPD_XENLA Condensin complex subunit 1 (Chromoso... 94 3e-19
sp|Q8K2Z4|CND1_MOUSE Condensin complex subunit 1 (Chromosom... 83 6e-16
sp|Q15021|CND1_HUMAN Condensin subunit 1 (Chromosome conden... 81 3e-15
sp|O94679|CND1_SCHPO Condensin complex subunit 1 (p128) (XC... 60 5e-09
sp|Q06156|CND1_YEAST Condensin complex subunit 1 (XCAP-D2 h... 46 1e-04
sp|P47637|Y397_MYCGE Hypothetical protein MG397 31 2.5
sp|P14203|YUXH_BACSU Hypothetical protein yuxH 30 7.4
>sp|Q9YHY6|XCAPD_XENLA Condensin complex subunit 1 (Chromosome-associated protein D2)
(Chromosome assembly protein XCAP-D2) (Chromosome
condensation-related SMC-associated protein 1) (Eg7)
Length = 1364
Score = 94.0 bits (232), Expect = 3e-19
Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 1/197 (0%)
Frame = +1
Query: 19 AKEMLEKNLGEVKGVIYILGQMMEITSLIECGLNNIQCMLSSRVVSDVLEAISFFVKAKM 198
++E+ ++ + + ++ L IE ++ I M+ VS V E I FFV
Sbjct: 590 SQEVQNSDMDKQEMLVQYLSDAHHFALKIEEAIDVISKMMYETAVSVVQEVIEFFVTVSQ 649
Query: 199 SNLLNVDSKIRKMLPHICSKDESIRAAITNAYKMLYLEVD-DDENDKTQLIVDSLSNLVT 375
+ +R+MLP + SK+ +R A+ +AY+ LYL + + E K Q +V SLS L+
Sbjct: 650 FGVSQALLGVRRMLPLVWSKEPGVREAVLSAYRRLYLSSNGESERVKAQALVRSLSLLMV 709
Query: 376 NPSFGELTCAEKLMINFTESGDINQPIIQCLWERFRCPNNAYTPSQKRNAVILFSMVANV 555
+ S G L C E+++ F + GDI+ +IQ LWE+F + + ++R AV+L M+
Sbjct: 710 DSSAGILQCLEEIVSEFVQKGDIHPSVIQLLWEKF-TQKSPCSEFERRAAVMLLGMMTRG 768
Query: 556 PKPFMSQYFDALITEGI 606
+ D L++ G+
Sbjct: 769 QPEIVMSNLDTLVSVGL 785
>sp|Q8K2Z4|CND1_MOUSE Condensin complex subunit 1 (Chromosome condensation-related
SMC-associated protein 1) (Chromosome-associated protein
D2) (mCAP-D2) (XCAP-D2 homolog)
Length = 1392
Score = 83.2 bits (204), Expect = 6e-16
Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 3/164 (1%)
Frame = +1
Query: 124 IQCMLSSRVVSDVLEAISFFVKAKMSNLLNVDSKIRKMLPHICSKDESIRAAITNAYKML 303
I M+ + V E I FFV + +R+MLP I SK+ +R A+ NAY+ L
Sbjct: 631 ISKMMYENTTTVVQEVIEFFVMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQL 690
Query: 304 YLEVDDDE-NDKTQLIVDSLSNLVTNPSFGELTCAEKLMINFTESGDINQPIIQCLWERF 480
YL D K Q ++ +LS L+ + S G + C E+++ F + ++ +IQ LWER
Sbjct: 691 YLNPKGDSARAKAQTLIHNLSLLLVDASVGTIQCLEEILCEFVQKDEVKPAVIQLLWERA 750
Query: 481 --RCPNNAYTPSQKRNAVILFSMVANVPKPFMSQYFDALITEGI 606
+ P+ +P ++ ++V+L M+A + DAL+ G+
Sbjct: 751 TEKVPS---SPLERCSSVMLLGMMARGKPEIVGSNLDALVRVGL 791
>sp|Q15021|CND1_HUMAN Condensin subunit 1 (Chromosome condensation-related SMC-associated
protein 1) (Chromosome-associated protein D2) (hCAP-D2)
(XCAP-D2 homolog)
Length = 1401
Score = 80.9 bits (198), Expect = 3e-15
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 1/162 (0%)
Frame = +1
Query: 124 IQCMLSSRVVSDVLEAISFFVKAKMSNLLNVDSKIRKMLPHICSKDESIRAAITNAYKML 303
I M+ + V E I FFV + +R+MLP I SK+ +R A+ NAY+ L
Sbjct: 641 ISKMMYENTTTVVQEVIEFFVMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQL 700
Query: 304 YLEVDDDE-NDKTQLIVDSLSNLVTNPSFGELTCAEKLMINFTESGDINQPIIQCLWERF 480
YL D K Q ++ +LS L+ + S G + C E+++ F + ++ + Q LWER
Sbjct: 701 YLNPKGDSARAKAQALIQNLSLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWER- 759
Query: 481 RCPNNAYTPSQKRNAVILFSMVANVPKPFMSQYFDALITEGI 606
A P ++ ++V+L M+A + D L++ G+
Sbjct: 760 ATEKVACCPLERCSSVMLLGMMARGKPEIVGSNLDTLVSIGL 801
>sp|O94679|CND1_SCHPO Condensin complex subunit 1 (p128) (XCAP-D2 homolog)
Length = 1158
Score = 60.1 bits (144), Expect = 5e-09
Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 7/183 (3%)
Frame = +1
Query: 79 QMMEITSLIECGLNNIQCMLSSRVVSDVLEAISFFVKAKMSNLLNVDSKIRKMLPHICSK 258
+ ++ ++E G I +L ++ S+V+E++ FFV + + I+KM+ I K
Sbjct: 523 EALQYIDIVEAGAKIISQLLFAKNKSEVIESMDFFVFCNSFGISSSKLYIKKMIHLIWVK 582
Query: 259 DES-----IRAAITNAYKMLYLEVDDDE--NDKTQLIVDSLSNLVTNPSFGELTCAEKLM 417
S I+ + + YK L+ E + N+ I +L +L + S ELT E+++
Sbjct: 583 GTSDEGNNIQNHVLSCYKTLFFEPPPNSGTNEAANYIARNLISLTYDASLAELTSLEQML 642
Query: 418 INFTESGDINQPIIQCLWERFRCPNNAYTPSQKRNAVILFSMVANVPKPFMSQYFDALIT 597
+ G + +I LW+ + + +Q+R ++I+ M+A + Q D LI
Sbjct: 643 CILMKDGYFSHLVITKLWQVYSYQKKDISRTQRRGSIIVIGMLALGNTDVVMQGLDHLIQ 702
Query: 598 EGI 606
G+
Sbjct: 703 IGL 705
>sp|Q06156|CND1_YEAST Condensin complex subunit 1 (XCAP-D2 homolog)
Length = 1176
Score = 45.8 bits (107), Expect = 1e-04
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Frame = +1
Query: 124 IQCMLSSRVVSDVLEAISFFVKAKMSNLLNVDSKIRKMLPHICSK---DE--SIRAAITN 288
I +L S+ ++VLE++ F V A ++ + I+KML + K DE SI +
Sbjct: 547 ISNLLFSKNRNEVLESMDFLVLADAFDIELSEFGIKKMLHLVWMKGTNDEGTSISVHLIE 606
Query: 289 AYKMLYLEVDDDEN--DKTQLIVDSLSNLVTNPSFGELTCAEKLMINFTESGDINQPIIQ 462
YK L+L D N +K I +L NL S +L E+L+ E I+Q +I
Sbjct: 607 CYKQLFLTAPDSCNMQEKAAHIAKNLINLSIGASIADLASLEQLLGMMYEQKLIDQHVIN 666
Query: 463 CLWERFRCPNNA 498
LW + + A
Sbjct: 667 ILWAIYNSASKA 678
>sp|P47637|Y397_MYCGE Hypothetical protein MG397
Length = 566
Score = 31.2 bits (69), Expect = 2.5
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Frame = +1
Query: 115 LNNIQCMLSSRVVSDVLEAISFFVKA-----KMSNLL--NVDSKIRKMLPHICSKDESIR 273
LNN+ ML R + +V EAIS+ +A K NL+ N+D R + K+E ++
Sbjct: 276 LNNLNLMLCERNMDEVQEAISWLFQAVSSKEKSINLVVENIDD-FRNQIQQYEKKNELLK 334
Query: 274 AAITNAYKMLYLEVDDDE-----NDKTQLIVDSLSNL 369
I + E D + N+ LI +++NL
Sbjct: 335 TTIKAIELVFQNETDVHDLIIELNENCDLITKNINNL 371
>sp|P14203|YUXH_BACSU Hypothetical protein yuxH
Length = 409
Score = 29.6 bits (65), Expect = 7.4
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 289 AYKMLYLEVDDD---ENDKTQLIVDSLSNLVTNPSFGELTCAEKLMINFTES 435
AY++LY E +++ D Q D + N N +LT ++ +NFTES
Sbjct: 19 AYELLYRESEENVYSAKDGDQATTDLVINSFLNIGIEKLTEGKRCFVNFTES 70
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,063,353
Number of Sequences: 369166
Number of extensions: 1512561
Number of successful extensions: 3453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3448
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)