Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_E11
(744 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C... 280 2e-75
sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C... 280 2e-75
sp|Q24572|CAF1_DROME Chromatin assembly factor 1 P55 subuni... 277 2e-74
sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subu... 264 2e-70
sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subu... 264 2e-70
sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein li... 238 1e-62
sp|O22467|MSI1_ARATH WD-40 repeat protein MSI1 237 3e-62
sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1 236 4e-62
sp|P90917|RBA1_CAEEL Trp-Asp repeats containing protein RBA-1 194 2e-49
sp|O22468|MSI2_ARATH WD-40 repeat protein MSI2 181 1e-45
>sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4) (MSI1
protein homolog)
Length = 425
Score = 280 bits (717), Expect = 2e-75
Identities = 124/190 (65%), Positives = 158/190 (83%), Gaps = 1/190 (0%)
Frame = +1
Query: 139 DYKIWKRDTPFLYDCLMVHPLEWPSLTAQWLPTIDRPIDKDYTVHRLILGTHTSDEQNHL 318
+YKIWK++TPFLYD +M H LEWPSLTAQWLP + RP KD+++HRL+LGTHTSDEQNHL
Sbjct: 20 EYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHL 79
Query: 319 LIASINMPNDQTEFDASAYDTERFDYGGFGFPNGKLEITMMINHEGEVNRARYMPQNETF 498
+IAS+ +PND +FDAS YD+E+ ++GGFG +GK+EI + INHEGEVNRARYMPQN
Sbjct: 80 VIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCI 139
Query: 499 VATKTPTADVLIFNYAIHPARPF-GMEVKPELRLKGHLKEGYGLSWNPIKAGYILSASDD 675
+ATKTP++DVL+F+Y HP++P E P+LRL+GH KEGYGLSWNP +G++LSASDD
Sbjct: 140 IATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDD 199
Query: 676 KTICMWDTNA 705
TIC+WD +A
Sbjct: 200 HTICLWDISA 209
Score = 36.2 bits (82), Expect = 0.095
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Frame = +1
Query: 415 NGKLEITMMINHEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVKPE-- 588
N KL++ +H+ E+ + ++ P NET +A+ + +++ + G E PE
Sbjct: 305 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS-----KIGEEQSPEDA 359
Query: 589 --------LRLKGHLKEGYGLSWNPIKAGYILSASDDKTICMW--------DTNATGSSS 720
GH + SWNP + I S S+D + +W D + GS
Sbjct: 360 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419
Query: 721 SEG 729
EG
Sbjct: 420 PEG 422
Score = 32.3 bits (72), Expect = 1.4
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +1
Query: 448 HEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVKPELR-LKGHLKEGYG 624
H EVN + P +E +AT + V +++ +K +L + H E +
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR---------NLKLKLHSFESHKDEIFQ 322
Query: 625 LSWNPIKAGYILSASDDKTICMWDTNATGSSSS 723
+ W+P + S+ D+ + +WD + G S
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 355
Score = 31.2 bits (69), Expect = 3.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 580 KPELRLKGHLKEGYGLSWNPIKAGYILSASDDKTICMWD 696
KP + H E LS+NP + + S DKT+ +WD
Sbjct: 264 KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
>sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4)
Length = 461
Score = 280 bits (717), Expect = 2e-75
Identities = 124/190 (65%), Positives = 158/190 (83%), Gaps = 1/190 (0%)
Frame = +1
Query: 139 DYKIWKRDTPFLYDCLMVHPLEWPSLTAQWLPTIDRPIDKDYTVHRLILGTHTSDEQNHL 318
+YKIWK++TPFLYD +M H LEWPSLTAQWLP + RP KD+++HRL+LGTHTSDEQNHL
Sbjct: 20 EYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHL 79
Query: 319 LIASINMPNDQTEFDASAYDTERFDYGGFGFPNGKLEITMMINHEGEVNRARYMPQNETF 498
+IAS+ +PND +FDAS YD+E+ ++GGFG +GK+EI + INHEGEVNRARYMPQN
Sbjct: 80 VIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCI 139
Query: 499 VATKTPTADVLIFNYAIHPARPF-GMEVKPELRLKGHLKEGYGLSWNPIKAGYILSASDD 675
+ATKTP++DVL+F+Y HP++P E P+LRL+GH KEGYGLSWNP +G++LSASDD
Sbjct: 140 IATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDD 199
Query: 676 KTICMWDTNA 705
TIC+WD +A
Sbjct: 200 HTICLWDISA 209
Score = 36.2 bits (82), Expect = 0.095
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Frame = +1
Query: 415 NGKLEITMMINHEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVKPE-- 588
N KL++ +H+ E+ + ++ P NET +A+ + +++ + G E PE
Sbjct: 305 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS-----KIGEEQSPEDA 359
Query: 589 --------LRLKGHLKEGYGLSWNPIKAGYILSASDDKTICMW--------DTNATGSSS 720
GH + SWNP + I S S+D + +W D + GS
Sbjct: 360 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419
Query: 721 SEG 729
EG
Sbjct: 420 PEG 422
Score = 32.3 bits (72), Expect = 1.4
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +1
Query: 448 HEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVKPELR-LKGHLKEGYG 624
H EVN + P +E +AT + V +++ +K +L + H E +
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR---------NLKLKLHSFESHKDEIFQ 322
Query: 625 LSWNPIKAGYILSASDDKTICMWDTNATGSSSS 723
+ W+P + S+ D+ + +WD + G S
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 355
Score = 31.2 bits (69), Expect = 3.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 580 KPELRLKGHLKEGYGLSWNPIKAGYILSASDDKTICMWD 696
KP + H E LS+NP + + S DKT+ +WD
Sbjct: 264 KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
>sp|Q24572|CAF1_DROME Chromatin assembly factor 1 P55 subunit (CAF-1 P55 subunit)
(dCAF-1) (Nucleosome remodeling factor 55 kDa subunit)
(NURF-55)
Length = 430
Score = 277 bits (709), Expect = 2e-74
Identities = 126/191 (65%), Positives = 155/191 (81%), Gaps = 1/191 (0%)
Frame = +1
Query: 139 DYKIWKRDTPFLYDCLMVHPLEWPSLTAQWLPTIDRPIDKDYTVHRLILGTHTSDEQNHL 318
+YKIWK++TPFLYD +M H LEWPSLTAQWLP + + KDY+VHRLILGTHTSDEQNHL
Sbjct: 24 EYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHL 83
Query: 319 LIASINMPNDQTEFDASAYDTERFDYGGFGFPNGKLEITMMINHEGEVNRARYMPQNETF 498
LIAS+ +P++ +FD S YD E+ ++GGFG GK+EI + INHEGEVNRARYMPQN
Sbjct: 84 LIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACV 143
Query: 499 VATKTPTADVLIFNYAIHPARPF-GMEVKPELRLKGHLKEGYGLSWNPIKAGYILSASDD 675
+ATKTP++DVL+F+Y HP++P E +P+LRL+GH KEGYGLSWNP GY+LSASDD
Sbjct: 144 IATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203
Query: 676 KTICMWDTNAT 708
TIC+WD NAT
Sbjct: 204 HTICLWDINAT 214
Score = 35.0 bits (79), Expect = 0.21
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Frame = +1
Query: 415 NGKLEITMMINHEGEVNRARYMPQNETFVATKTPTADVLIFNYAI---HPARPFGMEVKP 585
N KL++ +H+ E+ + ++ P NET +A+ + +++ + + + P
Sbjct: 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 368
Query: 586 ELRL--KGHLKEGYGLSWNPIKAGYILSASDDKTICMW 693
EL GH + SWNP + I S S+D + +W
Sbjct: 369 ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 32.3 bits (72), Expect = 1.4
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +1
Query: 448 HEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVKPELR-LKGHLKEGYG 624
H EVN + P +E +AT + V +++ +K +L + H E +
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR---------NLKLKLHSFESHKDEIFQ 326
Query: 625 LSWNPIKAGYILSASDDKTICMWDTNATGSSSS 723
+ W+P + S+ D+ + +WD + G S
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359
Score = 31.2 bits (69), Expect = 3.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 580 KPELRLKGHLKEGYGLSWNPIKAGYILSASDDKTICMWD 696
KP + H E LS+NP + + S DKT+ +WD
Sbjct: 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
>sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein P46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 264 bits (674), Expect = 2e-70
Identities = 116/190 (61%), Positives = 151/190 (79%), Gaps = 1/190 (0%)
Frame = +1
Query: 139 DYKIWKRDTPFLYDCLMVHPLEWPSLTAQWLPTIDRPIDKDYTVHRLILGTHTSDEQNHL 318
+YKIWK++TPFLYD +M H L+WPSLT QWLP + +P KDY +H L+LGTHTSDEQNHL
Sbjct: 19 EYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHL 78
Query: 319 LIASINMPNDQTEFDASAYDTERFDYGGFGFPNGKLEITMMINHEGEVNRARYMPQNETF 498
++A +++PND +FDAS D+++ ++GGFG GK+E + INHEGEVNRARYMPQN
Sbjct: 79 VVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHI 138
Query: 499 VATKTPTADVLIFNYAIHPARPF-GMEVKPELRLKGHLKEGYGLSWNPIKAGYILSASDD 675
+ATKTP++DVL+F+Y HPA+P E P+LRL+GH KEGYGLSWN +G++LSASDD
Sbjct: 139 IATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDD 198
Query: 676 KTICMWDTNA 705
T+C+WD NA
Sbjct: 199 HTVCLWDINA 208
Score = 35.0 bits (79), Expect = 0.21
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = +1
Query: 415 NGKLEITMMINHEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVK---P 585
N KL++ +H+ E+ + + P NET +A+ + +++ + + + P
Sbjct: 304 NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 363
Query: 586 ELRL--KGHLKEGYGLSWNPIKAGYILSASDDKTICMW 693
EL GH + SWNP + I S S+D + +W
Sbjct: 364 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 401
Score = 32.0 bits (71), Expect = 1.8
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +1
Query: 448 HEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVKPELR-LKGHLKEGYG 624
H EVN + P +E +AT + V +++ +K +L + H E +
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR---------NLKLKLHTFESHKDEIFQ 321
Query: 625 LSWNPIKAGYILSASDDKTICMWDTNATGSSSS 723
+ W+P + S+ D+ + +WD + G S
Sbjct: 322 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 354
Score = 30.8 bits (68), Expect = 4.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 580 KPELRLKGHLKEGYGLSWNPIKAGYILSASDDKTICMWD 696
KP + H E LS+NP + + S DKT+ +WD
Sbjct: 263 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 301
>sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein p46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 264 bits (674), Expect = 2e-70
Identities = 116/190 (61%), Positives = 151/190 (79%), Gaps = 1/190 (0%)
Frame = +1
Query: 139 DYKIWKRDTPFLYDCLMVHPLEWPSLTAQWLPTIDRPIDKDYTVHRLILGTHTSDEQNHL 318
+YKIWK++TPFLYD +M H L+WPSLT QWLP + +P KDY +H L+LGTHTSDEQNHL
Sbjct: 19 EYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHL 78
Query: 319 LIASINMPNDQTEFDASAYDTERFDYGGFGFPNGKLEITMMINHEGEVNRARYMPQNETF 498
++A +++PND +FDAS D+++ ++GGFG GK+E + INHEGEVNRARYMPQN
Sbjct: 79 VVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHI 138
Query: 499 VATKTPTADVLIFNYAIHPARPF-GMEVKPELRLKGHLKEGYGLSWNPIKAGYILSASDD 675
+ATKTP++DVL+F+Y HPA+P E P+LRL+GH KEGYGLSWN +G++LSASDD
Sbjct: 139 IATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDD 198
Query: 676 KTICMWDTNA 705
T+C+WD NA
Sbjct: 199 HTVCLWDINA 208
Score = 35.0 bits (79), Expect = 0.21
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = +1
Query: 415 NGKLEITMMINHEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVK---P 585
N KL++ +H+ E+ + + P NET +A+ + +++ + + + P
Sbjct: 304 NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 363
Query: 586 ELRL--KGHLKEGYGLSWNPIKAGYILSASDDKTICMW 693
EL GH + SWNP + I S S+D + +W
Sbjct: 364 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 401
Score = 32.0 bits (71), Expect = 1.8
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +1
Query: 448 HEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVKPELR-LKGHLKEGYG 624
H EVN + P +E +AT + V +++ +K +L + H E +
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR---------NLKLKLHTFESHKDEIFQ 321
Query: 625 LSWNPIKAGYILSASDDKTICMWDTNATGSSSS 723
+ W+P + S+ D+ + +WD + G S
Sbjct: 322 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 354
Score = 30.8 bits (68), Expect = 4.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 580 KPELRLKGHLKEGYGLSWNPIKAGYILSASDDKTICMWD 696
KP + H E LS+NP + + S DKT+ +WD
Sbjct: 263 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 301
>sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein lin-53 (Abnormal cell lineage
protein 53)
Length = 385
Score = 238 bits (607), Expect = 1e-62
Identities = 114/180 (63%), Positives = 133/180 (73%)
Frame = +1
Query: 187 MVHPLEWPSLTAQWLPTIDRPIDKDYTVHRLILGTHTSDEQNHLLIASINMPNDQTEFDA 366
M H LEWPSL+ QWLP + + + D+T+HRLILGTHTSDEQNHLLI+ I MP D +FDA
Sbjct: 1 MTHALEWPSLSVQWLPDVAKD-NSDHTIHRLILGTHTSDEQNHLLISKICMPTDDAQFDA 59
Query: 367 SAYDTERFDYGGFGFPNGKLEITMMINHEGEVNRARYMPQNETFVATKTPTADVLIFNYA 546
S YDTER +YGGFG NGK+E + INHEGEVNRARYMPQ +ATK+P ADV IF+Y
Sbjct: 60 SRYDTERSEYGGFGAVNGKVEPDIRINHEGEVNRARYMPQKSNIIATKSPHADVYIFDYL 119
Query: 547 IHPARPFGMEVKPELRLKGHLKEGYGLSWNPIKAGYILSASDDKTICMWDTNATGSSSSE 726
H A P P +RLKGH KEGYGLSWNP K G ILSASDD+T+C WD NA + + E
Sbjct: 120 KHSAVPRDNTFNPLIRLKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGE 179
Score = 34.3 bits (77), Expect = 0.36
Identities = 22/92 (23%), Positives = 40/92 (43%)
Frame = +1
Query: 448 HEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVKPELRLKGHLKEGYGL 627
H EVN + P +E +AT + V +++ R M++ + H E + +
Sbjct: 232 HSAEVNCLAFNPYSEFILATGSADKTVALWDL-----RNLRMKLHS---FESHRDEIFQV 283
Query: 628 SWNPIKAGYILSASDDKTICMWDTNATGSSSS 723
W+P + S+ DK + +WD + G S
Sbjct: 284 QWSPHNETILASSGTDKRLHVWDLSKIGEDQS 315
Score = 32.3 bits (72), Expect = 1.4
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = +1
Query: 415 NGKLEITMMINHEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVK---P 585
N ++++ +H E+ + ++ P NET +A+ + +++ + + + P
Sbjct: 265 NLRMKLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPP 324
Query: 586 ELRL--KGHLKEGYGLSWNPIKAGYILSASDDKTICMW 693
EL GH + SWNP + + S S+D + +W
Sbjct: 325 ELLFIHGGHTAKISDFSWNPNEPWVVCSVSEDNILQVW 362
>sp|O22467|MSI1_ARATH WD-40 repeat protein MSI1
Length = 424
Score = 237 bits (604), Expect = 3e-62
Identities = 106/197 (53%), Positives = 144/197 (73%), Gaps = 2/197 (1%)
Frame = +1
Query: 139 DYKIWKRDTPFLYDCLMVHPLEWPSLTAQWLPTIDRPIDKDYTVHRLILGTHTSD-EQNH 315
+YKIWK++TPFLYD ++ H LEWPSLT +WLP + P KDY+V ++ILGTHTS+ E N+
Sbjct: 20 EYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSESEPNY 79
Query: 316 LLIASINMPNDQTEFDASAYDTERFDYGGFGFPNGKLEITMMINHEGEVNRARYMPQNET 495
L++A + +P D TE +A YD +R ++GGFG GK++I INH+GEVNRARYMPQN
Sbjct: 80 LMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQQINHDGEVNRARYMPQNPF 139
Query: 496 FVATKTPTADVLIFNYAIHPAR-PFGMEVKPELRLKGHLKEGYGLSWNPIKAGYILSASD 672
+ATKT A+V +F+Y+ HP++ P P+L+L+GH EGYGLSW+ K G++LS SD
Sbjct: 140 IIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSEGYGLSWSKFKQGHLLSGSD 199
Query: 673 DKTICMWDTNATGSSSS 723
D IC+WD NAT + S
Sbjct: 200 DAQICLWDINATPKNKS 216
Score = 33.1 bits (74), Expect = 0.80
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Frame = +1
Query: 412 PNGKLEITMMINHEGEVNRARYMPQNETFVATKTPTADVLIFNY-----AIHPARPFGME 576
P+ + ++ H EVN + P NE VAT + V +F+ A+H
Sbjct: 260 PSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKLSTALH-------- 311
Query: 577 VKPELRLKGHLKEGYGLSWNPIKAGYILSASDDKTICMWDTN-----ATGSSSSEGP 732
H +E + + WNP + S + + +WD + T + +GP
Sbjct: 312 -----TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGP 363
Score = 30.0 bits (66), Expect = 6.8
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +1
Query: 445 NHEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVK---PELRL--KGHL 609
+H+ EV + + P+NET +A+ +++++ + + + PEL GH
Sbjct: 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGPPELLFIHGGHT 374
Query: 610 KEGYGLSWNPIKAGYILSASDDKTICMW 693
+ SWNP + I S ++D + +W
Sbjct: 375 SKISDFSWNPCEDWVISSVAEDNILQIW 402
>sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1
Length = 424
Score = 236 bits (603), Expect = 4e-62
Identities = 106/192 (55%), Positives = 143/192 (74%), Gaps = 2/192 (1%)
Frame = +1
Query: 139 DYKIWKRDTPFLYDCLMVHPLEWPSLTAQWLPTIDRPIDKDYTVHRLILGTHTSD-EQNH 315
+YKIWK++TPFLYD ++ H LEWPSLT +WLP + P KDY+V ++ILGTHTS+ E N+
Sbjct: 20 EYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSENEPNY 79
Query: 316 LLIASINMPNDQTEFDASAYDTERFDYGGFGFPNGKLEITMMINHEGEVNRARYMPQNET 495
L++A + +P + E DA YD +R ++GGFG NGK++I INH+GEVNRARYMPQN
Sbjct: 80 LMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPF 139
Query: 496 FVATKTPTADVLIFNYAIHPAR-PFGMEVKPELRLKGHLKEGYGLSWNPIKAGYILSASD 672
+ATKT +A+V +F+Y+ HP++ P P+LRL+GH EGYGLSW+ K G++LS SD
Sbjct: 140 IIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTEGYGLSWSQFKQGHLLSGSD 199
Query: 673 DKTICMWDTNAT 708
D IC+WD NAT
Sbjct: 200 DSHICLWDINAT 211
Score = 34.7 bits (78), Expect = 0.28
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 10/117 (8%)
Frame = +1
Query: 412 PNGKLEITMMINHEGEVNRARYMPQNETFVATKTPTADVLIFNY-----AIHPARPFGME 576
P+ I ++ H+ EVN + P NE VAT + V +F+ A+H
Sbjct: 260 PSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKISTALH-------- 311
Query: 577 VKPELRLKGHLKEGYGLSWNPIKAGYILSASDDKTICMWDTN-----ATGSSSSEGP 732
L H +E + + WNP + S + + +WD + T + +GP
Sbjct: 312 -----TLDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP 363
Score = 30.0 bits (66), Expect = 6.8
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Frame = +1
Query: 448 HEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVK---PELRL--KGHLK 612
H+ EV + + P+NET +A+ +++++ + + + PEL GH
Sbjct: 316 HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS 375
Query: 613 EGYGLSWNPIKAGYILSASDDKTICMW 693
+ SWNP + + S ++D + +W
Sbjct: 376 KISDFSWNPCEDWVVASVAEDNILQIW 402
>sp|P90917|RBA1_CAEEL Trp-Asp repeats containing protein RBA-1
Length = 412
Score = 194 bits (493), Expect = 2e-49
Identities = 87/198 (43%), Positives = 134/198 (67%), Gaps = 2/198 (1%)
Frame = +1
Query: 139 DYKIWKRDTPFLYDCLMVHPLEWPSLTAQWLPTIDRPIDKDYTVHRLILGTHT-SDEQNH 315
+++IWK++ P+LYD ++ +EWPSL+ QW+P + + + D ++HR+I GTHT QNH
Sbjct: 13 EHRIWKKNVPYLYDTVVTKEVEWPSLSVQWMPDVTKTENSDSSMHRMIHGTHTCGGVQNH 72
Query: 316 LLIASINMPNDQTEFDASAYDTERFDYGGFGFPNG-KLEITMMINHEGEVNRARYMPQNE 492
L+I+ + D EFD + +D+ER ++GG+G + K + + INH GEV+RARYMP N
Sbjct: 73 LMISKFTITTDTPEFDDAKWDSEREEFGGYGEGSAAKWDTEIKINHPGEVHRARYMPHNP 132
Query: 493 TFVATKTPTADVLIFNYAIHPARPFGMEVKPELRLKGHLKEGYGLSWNPIKAGYILSASD 672
+A++ P+ DV IF+Y HP+ P + +P+LRLKGH EGYG+SW+ + G++L+A D
Sbjct: 133 FIIASRGPSDDVYIFDYTKHPSEPKDTKFRPQLRLKGHEGEGYGMSWSNTREGHLLTAGD 192
Query: 673 DKTICMWDTNATGSSSSE 726
D IC WD NA + S +
Sbjct: 193 DGMICHWDINANQTISGQ 210
Score = 33.9 bits (76), Expect = 0.47
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 580 KPELRLKGHLKEGYGLSWNPIKAGYILSASDDKTICMWD 696
KP+L GH E +++NP + + S DKT+ +WD
Sbjct: 255 KPQLTAVGHTAEVNCITFNPFSEYILATGSVDKTVALWD 293
>sp|O22468|MSI2_ARATH WD-40 repeat protein MSI2
Length = 415
Score = 181 bits (460), Expect = 1e-45
Identities = 93/193 (48%), Positives = 120/193 (62%), Gaps = 3/193 (1%)
Frame = +1
Query: 139 DYKIWKRDTPFLYDCLMVHPLEWPSLTAQWLPTIDRPI--DKDYTVHRLILGTHTSDE-Q 309
D+ +WK++TPFLYD L+ HPLEWPSLT W+P+ P D + VH+LILGTHTS Q
Sbjct: 17 DFSVWKKNTPFLYDLLISHPLEWPSLTVHWVPSTPNPYVADSYFGVHKLILGTHTSGSAQ 76
Query: 310 NHLLIASINMPNDQTEFDASAYDTERFDYGGFGFPNGKLEITMMINHEGEVNRARYMPQN 489
+ L++A + P E + + F P K+EI I +GEVNRAR MPQ
Sbjct: 77 DFLMVADVVTPTPNAEPGIGGANQDPF------IP--KVEIRQRIRVDGEVNRARCMPQK 128
Query: 490 ETFVATKTPTADVLIFNYAIHPARPFGMEVKPELRLKGHLKEGYGLSWNPIKAGYILSAS 669
T V KT +V +F+YA H A+ E P+LRL GH KEGYGLSW+P K GY+LS S
Sbjct: 129 PTLVGAKTSGCEVFLFDYAKHAAKSQTSECDPDLRLVGHDKEGYGLSWSPFKEGYLLSGS 188
Query: 670 DDKTICMWDTNAT 708
D+ IC+WD +AT
Sbjct: 189 QDQKICLWDVSAT 201
Score = 41.2 bits (95), Expect = 0.003
Identities = 25/93 (26%), Positives = 41/93 (44%)
Frame = +1
Query: 448 HEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEVKPELRLKGHLKEGYGL 627
HE EVN + P NE +AT + + V +F+ A P + H E + +
Sbjct: 259 HEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNA--------PLHVMSSHEGEVFQV 310
Query: 628 SWNPIKAGYILSASDDKTICMWDTNATGSSSSE 726
W+P + S+ +D+ + +WD N G E
Sbjct: 311 EWDPNHETVLASSGEDRRLMVWDLNRVGEEQLE 343
Score = 33.1 bits (74), Expect = 0.80
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Frame = +1
Query: 436 MMINHEGEVNRARYMPQNETFVATKTPTADVLIFNYAIHPARPFGMEV-----KPELRLK 600
+M +HEGEV + + P +ET +A+ +++++ +E+ PEL
Sbjct: 299 VMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFS 358
Query: 601 --GHLKEGYGLSWNPIKAGYILSASDDKTICMW 693
GH + +WN + I S ++D ++ +W
Sbjct: 359 HGGHKAKISDFAWNKNEPWVIASVAEDNSLQVW 391
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,723,675
Number of Sequences: 369166
Number of extensions: 1518085
Number of successful extensions: 4044
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3960
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)