Planarian EST Database


Dr_sW_015_D18

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_015_D18
         (544 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q48153|HHUA_HAEIN  Hemoglobin-haptoglobin binding protein...    32   1.3  
sp|Q10301|YD48_SCHPO  Hypothetical protein C22H10.08 in chro...    30   2.9  
sp|P42724|TFXB_RHILT  Trifolitoxin processing protein tfxB         30   3.8  
sp|Q9ZA21|HGPA_HAEIN  Hemoglobin and hemoglobin-haptoglobin ...    30   3.8  
sp|Q6NVD0|FREM2_MOUSE  FRAS1-related extracellular matrix pr...    30   4.9  
sp|O33815|BGAL_STAXY  Beta-galactosidase (Lactase)                 29   6.5  
sp|O65782|C83B1_ARATH  Cytochrome P450 83B1                        29   8.4  
sp|Q60296|T1SH_METJA  Putative type I restriction enzyme Mja...    29   8.4  
sp|Q90WJ8|AJL2_ANGJA  Lactose-binding lectin l-2 precursor (...    29   8.4  
>sp|Q48153|HHUA_HAEIN Hemoglobin-haptoglobin binding protein A precursor
           (Hemoglobin-haptoglobin utilization protein A)
          Length = 1046

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
 Frame = +3

Query: 15  QYGTGVELCLSWVKANNGFIPPKAVRAGDQTFVA---RAKHEGQYIPGKLVEGWNEVFVA 185
           +Y TG+ +  +    N+GF    AVR  D+  VA      H+ + I     +G+ E+F  
Sbjct: 92  RYETGITVVEAGRFGNSGF----AVRGVDENRVAVQIDGLHQAETISS---QGFKELFEG 144

Query: 186 YGGAEHSKNYYEVLVESSILNHKGYEWRWADGENVPKGAVVGGIN 320
           YG   +++N  E+     +   KG     AD      GA+ G ++
Sbjct: 145 YGNFNNTRNTAEIETLKQVTIRKG-----ADSLKSGSGALGGSVS 184
>sp|Q10301|YD48_SCHPO Hypothetical protein C22H10.08 in chromosome I
          Length = 492

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 132 GQYIPGKLVEGWNEVFVAYGGAEHSKNYYEVLVESSILNHKG 257
           G  I G+L   WN     +    H+K+YY VL+ S  L+  G
Sbjct: 455 GSCIDGRLTSAWN-----WANNIHTKDYYRVLLMSGFLSFNG 491
>sp|P42724|TFXB_RHILT Trifolitoxin processing protein tfxB
          Length = 373

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +3

Query: 270 WADGENVPKGAVVGGINDGQPLYVARSNVGGQVVVGKYFPQHGCGYFPYGGEEHRVDSVE 449
           +A GE++ K    GG         AR  +   VVVG        G + Y    HR+D++E
Sbjct: 213 YATGEHLRKAVPSGG---------ARHPIEFYVVVGDEIAGIEAGVYHYNVRHHRLDAIE 263

Query: 450 VLCCSTK 470
           +   S K
Sbjct: 264 IASTSLK 270
>sp|Q9ZA21|HGPA_HAEIN Hemoglobin and hemoglobin-haptoglobin binding protein A precursor
           (Heme-repressible hemoglobin-binding protein) (Hgb)
          Length = 1077

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
 Frame = +3

Query: 15  QYGTGVELCLSWVKANNGFIPPKAVRAGDQTFVA---RAKHEGQYIPGKLVEGWNEVFVA 185
           +Y TG+ +  +    N+GF    AVR  ++  VA      H+ + I     +G+ E+F  
Sbjct: 120 RYETGITVVEAGRFGNSGF----AVRGVEENRVAVQIDGLHQAETISS---QGFKELFEG 172

Query: 186 YGGAEHSKNYYEVLVESSILNHKGYEWRWADGENVPKGAVVGGIN 320
           YG   +++N  E+     +   KG     AD      GA+ G ++
Sbjct: 173 YGNFNNTRNSAEIETLKQVTIRKG-----ADSLKSGSGALGGSVS 212
>sp|Q6NVD0|FREM2_MOUSE FRAS1-related extracellular matrix protein 2 precursor (ECM3 homolog)
            (NV domain containing protein 1)
          Length = 3160

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 99   DQTFVARAKHEGQYIPGKLVEGWNEVFVAYGGAEHSKNYYEVLVE 233
            D+ F  +A+ + Q+ PG+    W    ++ G  EHS+ +  VL E
Sbjct: 1804 DRDFKGKAQKQVQFNPGQTRASWRVRILSDGEHEHSETFQVVLSE 1848
>sp|O33815|BGAL_STAXY Beta-galactosidase (Lactase)
          Length = 994

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
 Frame = +3

Query: 183 AYGGAEHSKNYYEVLVESSILNHKGYEWRWADGENVPKGAVVGGINDGQPLYVARSNVGG 362
           A G +    + Y+ LVE       G+ W W D       A+  G+ DG P++    + G 
Sbjct: 514 AMGNSPGDLHAYQTLVEQYDSFIGGFVWEWCD------HAIQTGMKDGNPIFRYGGDFGE 567

Query: 363 QV------VVGKYFPQH--GCGYFPYGGEEHR 434
           ++      V G  FP      GY+ +  +EHR
Sbjct: 568 KLHDGNFCVDGIVFPNRVPHEGYYEF-KQEHR 598
>sp|O65782|C83B1_ARATH Cytochrome P450 83B1
          Length = 499

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +3

Query: 111 VARAKHEGQYIPGKLVEGWNEVFVAYGGAEHSKNYYEVLVESSILNHKGYEWRWADGENV 290
           +A AK  G  IP K +   N   V+   A    N  E + E  +  HKG +++  D E +
Sbjct: 373 IADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMNEHKGVDFKGQDFELL 432

Query: 291 PKGA 302
           P G+
Sbjct: 433 PFGS 436
>sp|Q60296|T1SH_METJA Putative type I restriction enzyme MjaXP specificity protein (S
           protein) (S.MjaXP)
          Length = 432

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -2

Query: 246 LKYLIPPKLRNNFYYVLRLRKLQKLHSSLQPIFQEYID--LRVLLLRQKSDHQLSQL 82
           L YL    + N +  +     LQK HS +QP+F++ I+   ++++L++  D  L +L
Sbjct: 366 LPYLKISDIENKYIIIPPQPILQKFHSLVQPLFEKIINNQKQIMVLKKIRDALLPKL 422
>sp|Q90WJ8|AJL2_ANGJA Lactose-binding lectin l-2 precursor (Ajl-2)
          Length = 166

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +3

Query: 249 HKGYEWRWADGENVPKGAVVGGINDGQPLYVARSNVGGQVVVGKYFPQHGCGYFPYGGEE 428
           H+G  W W+DG +          N G+P     ++ GG         +  C +  YGG++
Sbjct: 100 HEGRSWLWSDGTSASAEGDFSMWNPGEP-----NDAGG---------KEDCVHDNYGGQK 145

Query: 429 H 431
           H
Sbjct: 146 H 146
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,097,444
Number of Sequences: 369166
Number of extensions: 1478208
Number of successful extensions: 4292
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4285
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)