Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_D15
(741 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O76485|CSK2B_SPOFR Casein kinase II beta subunit (CK II ... 94 5e-19
sp|P08182|CSK2B_DROME Casein kinase II beta subunit (CK II ... 89 1e-17
sp|P28021|CSK2B_XENLA Casein kinase II beta subunit (CK II ... 86 1e-16
sp|P67870|CSK2B_HUMAN Casein kinase II beta subunit (CK II ... 86 1e-16
sp|Q91398|CSK2B_BRARE Casein kinase II beta subunit (CK II ... 84 4e-16
sp|P28548|CSK2B_CAEEL Casein kinase II beta subunit (CK II ... 64 3e-10
sp|O96863|CSK2C_DROME Casein kinase II beta' subunit (CK II... 53 7e-07
sp|Q24536|SSL_DROME Suppressor-of-stellate-like protein (Su... 38 0.032
sp|Q8TG11|CSK2C_NEUCR Casein kinase II beta 2 subunit (CK I... 36 0.094
sp|P38930|CSK2C_YEAST Casein kinase II beta' subunit (CK II... 35 0.16
>sp|O76485|CSK2B_SPOFR Casein kinase II beta subunit (CK II beta)
Length = 221
Score = 93.6 bits (231), Expect = 5e-19
Identities = 43/57 (75%), Positives = 50/57 (87%), Gaps = 1/57 (1%)
Frame = +1
Query: 7 HMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQIQYQAAANCKMPPRN-AYGNGKR 174
HM+F++HPEYRPKRP +QFVP+LYGFKIHPLAYQIQ QAAAN K P R+ +Y NGKR
Sbjct: 165 HMVFMVHPEYRPKRPASQFVPRLYGFKIHPLAYQIQQQAAANFKAPLRSLSYNNGKR 221
>sp|P08182|CSK2B_DROME Casein kinase II beta subunit (CK II beta)
Length = 235
Score = 89.0 bits (219), Expect = 1e-17
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = +1
Query: 7 HMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQIQYQAAANCKMPPRNAYG 162
HMLF++HPEYRPKRP NQFVP+LYGFKIH LAYQIQ QAAAN KMP R G
Sbjct: 165 HMLFMVHPEYRPKRPTNQFVPRLYGFKIHSLAYQIQLQAAANFKMPLRAQRG 216
>sp|P28021|CSK2B_XENLA Casein kinase II beta subunit (CK II beta) (Phosvitin)
Length = 215
Score = 85.9 bits (211), Expect = 1e-16
Identities = 36/46 (78%), Positives = 42/46 (91%)
Frame = +1
Query: 7 HMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQIQYQAAANCKMP 144
HMLF++HPEYRPKRP NQFVP+LYGFKIHP+AYQ+Q QAA+N K P
Sbjct: 165 HMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAASNFKSP 210
>sp|P67870|CSK2B_HUMAN Casein kinase II beta subunit (CK II beta) (Phosvitin) (G5a)
sp|P67874|CSK2B_RAT Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67873|CSK2B_RABIT Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67872|CSK2B_PIG Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67871|CSK2B_MOUSE Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67869|CSK2B_CHICK Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67868|CSK2B_BOVIN Casein kinase II beta subunit (CK II beta) (Phosvitin)
Length = 215
Score = 85.9 bits (211), Expect = 1e-16
Identities = 36/46 (78%), Positives = 42/46 (91%)
Frame = +1
Query: 7 HMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQIQYQAAANCKMP 144
HMLF++HPEYRPKRP NQFVP+LYGFKIHP+AYQ+Q QAA+N K P
Sbjct: 165 HMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAASNFKSP 210
>sp|Q91398|CSK2B_BRARE Casein kinase II beta subunit (CK II beta)
Length = 215
Score = 84.0 bits (206), Expect = 4e-16
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = +1
Query: 7 HMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQIQYQAAANCKMP 144
HMLF++HPEYRPKRP NQFVP+LYGFKIHP+AYQ+Q QAA++ K P
Sbjct: 165 HMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAASSFKSP 210
>sp|P28548|CSK2B_CAEEL Casein kinase II beta subunit (CK II beta)
Length = 234
Score = 64.3 bits (155), Expect = 3e-10
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = +1
Query: 7 HMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAY 105
HMLF +HP+ RP+RP+ QFVPKLYGFKIHP+AY
Sbjct: 164 HMLFFVHPDLRPRRPVTQFVPKLYGFKIHPVAY 196
>sp|O96863|CSK2C_DROME Casein kinase II beta' subunit (CK II beta')
Length = 219
Score = 53.1 bits (126), Expect = 7e-07
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +1
Query: 7 HMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQIQYQAAANCKMPP 147
HM F+ P+ RPKR +FVP+LYGFKIHP AY+ + + M P
Sbjct: 163 HMFFMEKPDARPKRAKQKFVPRLYGFKIHPTAYRTAAEIQKDVTMTP 209
>sp|Q24536|SSL_DROME Suppressor-of-stellate-like protein (Suste-like protein)
(Su(ste)-like)
Length = 219
Score = 37.7 bits (86), Expect = 0.032
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 7 HMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQIQYQAAANCKMPPRNA 156
HM F+ P P P+ +++P++YGF++H A MPP +A
Sbjct: 157 HMFFMQLPSLIPSPPVEKYIPRIYGFQLHKKAL-----------MPPESA 195
>sp|Q8TG11|CSK2C_NEUCR Casein kinase II beta 2 subunit (CK II beta 2)
Length = 285
Score = 36.2 bits (82), Expect = 0.094
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +1
Query: 7 HMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQIQYQAAANCKMPPR 150
++ F ++P P + + +++P+ YGFK+H A +++Q + +M R
Sbjct: 169 NIFFQVYPTLVPAKSVERYIPRCYGFKVHAAAALVRWQNSQRDEMRRR 216
>sp|P38930|CSK2C_YEAST Casein kinase II beta' subunit (CK II beta')
Length = 258
Score = 35.4 bits (80), Expect = 0.16
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 10 MLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQIQYQAAANCKM 141
M P+ PK P ++VPK++GF++H A ++Q K+
Sbjct: 196 MFLQAFPDMVPKHPTKRYVPKIFGFELHKQAQLTRWQELQRLKL 239
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,137,774
Number of Sequences: 369166
Number of extensions: 1356464
Number of successful extensions: 2831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2828
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)