Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_D06
(857 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q62384|ZPR1_MOUSE Zinc-finger protein ZPR1 (Zinc finger ... 236 6e-62
sp|O75312|ZPR1_HUMAN Zinc-finger protein ZPR1 (Zinc finger ... 235 1e-61
sp|O13724|ZPR1_SCHPO Zinc-finger protein zpr1 211 2e-54
sp|O16999|ZPR1_CAEEL Zinc-finger protein ZPR1 homolog 209 8e-54
sp|P53303|ZPR1_YEAST Zinc-finger protein ZPR1 201 2e-51
sp|Q57950|Y530_METJA Hypothetical protein MJ0530 59 1e-08
sp|O58960|Y1223_PYRHO Hypothetical protein PH1223 55 3e-07
sp|Q8BRB7|MYST4_MOUSE Histone acetyltransferase MYST4 (MYST... 33 0.78
sp|P47368|TOP1_MYCGE DNA topoisomerase I (Omega-protein) (R... 32 1.7
sp|P33334|PRP8_YEAST Pre-mRNA splicing factor PRP8 32 2.3
>sp|Q62384|ZPR1_MOUSE Zinc-finger protein ZPR1 (Zinc finger protein 259)
Length = 459
Score = 236 bits (602), Expect = 6e-62
Identities = 126/276 (45%), Positives = 171/276 (61%)
Frame = +1
Query: 1 SEFSVELVDPTGNSIIENYMAPKADPQLSVEHYKRSKEENEALAINEEDFVENEEPSKNY 180
S F++ + DP+GNS +EN AP+ D L + +Y R+ ++ E L + E
Sbjct: 190 SPFTLVIDDPSGNSFVENPHAPQKDNALVITYYDRTPQQAEMLGLQAEA----------- 238
Query: 181 VEEAQEEFNPKNEVLIFNLLCPECNSPIEGRMKMLDIPHFKEVIVMASNCDNCGFKENEV 360
EE EE + +NEVL FN CPECN+P + MK++ IPHFKEVI+MA+NC+NCG + NEV
Sbjct: 239 PEEKAEEEDLRNEVLQFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEV 298
Query: 361 KGGCGISEKARRITLKIETPEDLTRDFLKSDTAAMKIPELEIETEAGSLGGRFTTVEGIL 540
K G + RITL I P D+TRD LKS+T +++IPELE E LGG+FTT+EG+L
Sbjct: 299 KSGGAVEPLGTRITLHITDPSDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLL 358
Query: 541 HQMADKLEETNPFLKGDSQTDTPTEVILSNLIQSLHNVGSGKRFGVTLIIEDPAGGSYIQ 720
+ + L NPF GDS +E L Q L + GK I+ DPAG SY+Q
Sbjct: 359 KDIRE-LVTKNPFTLGDSSNPDQSEK-LQEFSQKLGQIIEGK-MKAHFIMNDPAGNSYLQ 415
Query: 721 DIFLPEKDPRLTVEDYERTFEENELLGLNDMVTDEY 828
+++ PE DP + VE Y+RTF++NE LGLNDM T+ Y
Sbjct: 416 NVYAPEDDPEMKVERYKRTFDQNEELGLNDMKTEGY 451
Score = 113 bits (282), Expect = 8e-25
Identities = 61/196 (31%), Positives = 105/196 (53%)
Frame = +1
Query: 238 LCPECNSPIEGRMKMLDIPHFKEVIVMASNCDNCGFKENEVKGGCGISEKARRITLKIET 417
LC C R+ + IP F+E+IV + +C++CG+ E++ I ++ R TL + +
Sbjct: 50 LCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTVRS 109
Query: 418 PEDLTRDFLKSDTAAMKIPELEIETEAGSLGGRFTTVEGILHQMADKLEETNPFLKGDSQ 597
ED+ R+ +K+D+A +IPEL+ E A S G TTVEG++ + LE+ P +
Sbjct: 110 QEDMNREVVKTDSATTRIPELDFEIPAFSQKGALTTVEGLISRAISGLEQDQPTRRAVEG 169
Query: 598 TDTPTEVILSNLIQSLHNVGSGKRFGVTLIIEDPAGGSYIQDIFLPEKDPRLTVEDYERT 777
++ L + S TL+I+DP+G S++++ P+KD L + Y+RT
Sbjct: 170 AIAERIDEFIGKLKDLKQMAS----PFTLVIDDPSGNSFVENPHAPQKDNALVITYYDRT 225
Query: 778 FEENELLGLNDMVTDE 825
++ E+LGL +E
Sbjct: 226 PQQAEMLGLQAEAPEE 241
>sp|O75312|ZPR1_HUMAN Zinc-finger protein ZPR1 (Zinc finger protein 259)
Length = 459
Score = 235 bits (600), Expect = 1e-61
Identities = 125/276 (45%), Positives = 173/276 (62%)
Frame = +1
Query: 1 SEFSVELVDPTGNSIIENYMAPKADPQLSVEHYKRSKEENEALAINEEDFVENEEPSKNY 180
S F++ + DP+GNS +EN AP+ D L + HY R++++ E L + EE P+
Sbjct: 190 SPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQEE------APA--- 240
Query: 181 VEEAQEEFNPKNEVLIFNLLCPECNSPIEGRMKMLDIPHFKEVIVMASNCDNCGFKENEV 360
E EE + +NEVL F+ CPECN+P + MK++ IPHFKEVI+MA+NC+NCG + NEV
Sbjct: 241 --EKPEEEDLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEV 298
Query: 361 KGGCGISEKARRITLKIETPEDLTRDFLKSDTAAMKIPELEIETEAGSLGGRFTTVEGIL 540
K G + RITL I D+TRD LKS+T +++IPELE E LGG+FTT+EG+L
Sbjct: 299 KSGGAVEPLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLL 358
Query: 541 HQMADKLEETNPFLKGDSQTDTPTEVILSNLIQSLHNVGSGKRFGVTLIIEDPAGGSYIQ 720
+ + L NPF GDS TE L Q + + G I++DPAG SY+Q
Sbjct: 359 KDIRE-LVTKNPFTLGDSSNPGQTE-RLQEFSQKMDQIIEG-NMKAHFIMDDPAGNSYLQ 415
Query: 721 DIFLPEKDPRLTVEDYERTFEENELLGLNDMVTDEY 828
+++ PE DP + VE Y+RTF++NE LGLNDM T+ Y
Sbjct: 416 NVYAPEDDPEMKVERYKRTFDQNEELGLNDMKTEGY 451
Score = 119 bits (299), Expect = 8e-27
Identities = 66/193 (34%), Positives = 109/193 (56%), Gaps = 2/193 (1%)
Frame = +1
Query: 238 LCPECNSPIEGRMKMLDIPHFKEVIVMASNCDNCGFKENEVKGGCGISEKARRITLKIET 417
LC C R+ + IP F+E+IV + +C++CG+ E++ I ++ R TL +
Sbjct: 50 LCMNCYCNGMTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRA 109
Query: 418 PEDLTRDFLKSDTAAMKIPELEIETEAGSLGGRFTTVEGILHQMADKLEETNPFLKG--D 591
ED+ R+ +K+D+AA +IPEL+ E A S G TTVEG++ + LE+ P + D
Sbjct: 110 LEDMNREVVKTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKD 169
Query: 592 SQTDTPTEVILSNLIQSLHNVGSGKRFGVTLIIEDPAGGSYIQDIFLPEKDPRLTVEDYE 771
+ + E I+ ++ L V S TLII+DP+G S++++ P+KD L + Y
Sbjct: 170 ATAERIDEFIVK--LKELKQVAS----PFTLIIDDPSGNSFVENPHAPQKDDALVITHYN 223
Query: 772 RTFEENELLGLND 810
RT ++ E+LGL +
Sbjct: 224 RTRQQEEMLGLQE 236
>sp|O13724|ZPR1_SCHPO Zinc-finger protein zpr1
Length = 459
Score = 211 bits (538), Expect = 2e-54
Identities = 122/283 (43%), Positives = 175/283 (61%), Gaps = 9/283 (3%)
Frame = +1
Query: 7 FSVELVDPTGNSIIENYMAPKAD-PQLSVEHYKRSKEENEALAINEEDFVENEEPSKNYV 183
F++ + D TGNS IE M P D + S YKR+ E+N L + + D E+ + N
Sbjct: 177 FTITVDDITGNSWIE--MKPGRDGDRWSQVSYKRTLEQNTKLGLVDTDQPEDVKTQTNNA 234
Query: 184 EEAQE------EFNPKNEVLIFNLLCPECNSPIEGRMKMLDIPHFKEVIVMASNCDNCGF 345
+ E +P NEV F+ CP C+ + MK+LDIPHFKEVI+M++ CD CG+
Sbjct: 235 SNTLKHDATAVEVDP-NEVHTFHATCPSCSHQCDTHMKLLDIPHFKEVIIMSTVCDRCGY 293
Query: 346 KENEVKGGCGISEKARRITLKIETPEDLTRDFLKSDTAAMKIPELEIETEAGSLGGRFTT 525
+ NEVK G I K R+ITLK+ EDL+RD LKS+TA++KIPEL ++ G+LGGRFTT
Sbjct: 294 RSNEVKTGGEIPPKGRKITLKVMDAEDLSRDILKSETASLKIPELGLDLFPGTLGGRFTT 353
Query: 526 VEGILHQMADKLEETNPFLKGDSQTDTPTEVILSNLIQSLHNVGSGKRFGV--TLIIEDP 699
+EG+L Q+ D+L +TD+ T ++N Q L N+ + + TLI++DP
Sbjct: 354 IEGLLAQVYDELYGR----VFSQETDSMTPEQVANWQQFLCNLTAAREGATQFTLILDDP 409
Query: 700 AGGSYIQDIFLPEKDPRLTVEDYERTFEENELLGLNDMVTDEY 828
SY+Q+ + P+ DP +T+E+YER+F+ NE LGLNDM T+ Y
Sbjct: 410 LSQSYLQNYYAPDPDPNMTIEEYERSFQVNEELGLNDMKTENY 452
Score = 98.6 bits (244), Expect = 2e-20
Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 3/227 (1%)
Frame = +1
Query: 139 EEDFVENEEPSKNYVEEAQEEFNPKNEVLIFNLLCPECNSPIEGRMKMLDIPHFKEVIVM 318
EE F ++N E N EV LC EC ++ + IP+F+EV++M
Sbjct: 7 EELFTSIGNAAQNVSTAEDREGNGVQEV---ESLCMECGKNGTTKLLLTVIPYFREVVLM 63
Query: 319 ASNCDNCGFKENEVKGGCGISEKARRITLKIETPEDLTRDFLKSDTAAMKIPELEIETEA 498
+ C +CGFK +V+ I + +IT +E EDL R +KS A + IPE+++E
Sbjct: 64 SFECPHCGFKNAQVQHAETIQPEGSKITFHVEDKEDLNRTVVKSQEAIVSIPEIQLEI-P 122
Query: 499 GSLGGRFTTVEGILHQMADKLEETNPFLKGDSQTDTPTEVI--LSNLIQSLHNVGSGKRF 672
G L G+ TT+EGIL + D L + + +S+ ++ ++ ++ I+ ++++ SG
Sbjct: 123 GRL-GQLTTIEGILSNVVDDLSK-----EQESRKESAPQLYDQINAFIEKVNSLRSGS-V 175
Query: 673 GVTLIIEDPAGGSYIQDIFLPEKD-PRLTVEDYERTFEENELLGLND 810
T+ ++D G S+I+ P +D R + Y+RT E+N LGL D
Sbjct: 176 PFTITVDDITGNSWIE--MKPGRDGDRWSQVSYKRTLEQNTKLGLVD 220
Score = 47.4 bits (111), Expect = 5e-05
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +1
Query: 1 SEFSVELVDPTGNSIIENYMAPKADPQLSVEHYKRSKEENEALAINE 141
++F++ L DP S ++NY AP DP +++E Y+RS + NE L +N+
Sbjct: 400 TQFTLILDDPLSQSYLQNYYAPDPDPNMTIEEYERSFQVNEELGLND 446
>sp|O16999|ZPR1_CAEEL Zinc-finger protein ZPR1 homolog
Length = 455
Score = 209 bits (532), Expect = 8e-54
Identities = 108/274 (39%), Positives = 164/274 (59%)
Frame = +1
Query: 7 FSVELVDPTGNSIIENYMAPKADPQLSVEHYKRSKEENEALAINEEDFVENEEPSKNYVE 186
+++ L DPTGN I+N DP+ + HY R+ +E + LA+ +++ E E
Sbjct: 169 WTLRLRDPTGNCYIQNPDVRHVDPRCIISHYHRNLDERKLLALADDNEEEEEVEPSAAAP 228
Query: 187 EAQEEFNPKNEVLIFNLLCPECNSPIEGRMKMLDIPHFKEVIVMASNCDNCGFKENEVKG 366
E + + K EVL F CP C+ P E +MK DIP F+ VI+M+ CD CG+K NEVK
Sbjct: 229 EFKSYEDAKQEVLHFATDCPNCHGPTEVKMKPTDIPFFQTVIIMSLACDRCGYKSNEVKS 288
Query: 367 GCGISEKARRITLKIETPEDLTRDFLKSDTAAMKIPELEIETEAGSLGGRFTTVEGILHQ 546
G I ++ R+++K+E DL RD LK+DT A+ IPE+++E +L GRFTT+EG+L
Sbjct: 289 GGAIRDQGCRMSVKLEKDLDLARDVLKTDTCALSIPEIDLEVGGNALCGRFTTIEGLLTA 348
Query: 547 MADKLEETNPFLKGDSQTDTPTEVILSNLIQSLHNVGSGKRFGVTLIIEDPAGGSYIQDI 726
++L+ + F GDS T + ++ ++ L ++ R T+I++DP G SY+Q +
Sbjct: 349 TKEQLDAQSSFFMGDS-AQTGEKSAVTTFLEKLDDI-IALRLPATIILDDPTGCSYVQSL 406
Query: 727 FLPEKDPRLTVEDYERTFEENELLGLNDMVTDEY 828
P DPRLT E Y RT+E+N+ LG+NDM + Y
Sbjct: 407 TAPMDDPRLTKEFYTRTYEQNDELGINDMKVENY 440
Score = 115 bits (287), Expect = 2e-25
Identities = 68/201 (33%), Positives = 108/201 (53%), Gaps = 5/201 (2%)
Frame = +1
Query: 223 LIFNLLCPECNSPIEGRMKMLDIPHFKEVIVMASNCDNCGFKENEVKGGCGISEKARRIT 402
++ + +CP C E R+ IP+++ VI+M+ C +CG K NE++ G + E I
Sbjct: 22 IVVDSVCPVCEEDGETRIMCTSIPYYRAVILMSFECPHCGHKNNEIQSGEAVQEHGTLIV 81
Query: 403 LKIETPEDLTRDFLKSDTAAMKIPELEIETEAGSLGGRFTTVEGIL---HQMADKLEETN 573
L+++ PEDL R +KS+ A++++PEL++E S G TTVEG+L H+ + +E
Sbjct: 82 LRVQKPEDLRRQLVKSEYASIEVPELQLEIPHKSQPGEVTTVEGVLERVHRGLSQDQEKR 141
Query: 574 PFL--KGDSQTDTPTEVILSNLIQSLHNVGSGKRFGVTLIIEDPAGGSYIQDIFLPEKDP 747
L +G SQ D + I S + G+ + TL + DP G YIQ+ + DP
Sbjct: 142 RLLDPEGASQIDAYLQKITSCM-------ELGETW--TLRLRDPTGNCYIQNPDVRHVDP 192
Query: 748 RLTVEDYERTFEENELLGLND 810
R + Y R +E +LL L D
Sbjct: 193 RCIISHYHRNLDERKLLALAD 213
>sp|P53303|ZPR1_YEAST Zinc-finger protein ZPR1
Length = 486
Score = 201 bits (511), Expect = 2e-51
Identities = 117/287 (40%), Positives = 165/287 (57%), Gaps = 22/287 (7%)
Frame = +1
Query: 19 LVDPTGNSIIENYMAPKADPQLSVEHYKRSKEENEALAINEEDFVENEE----------- 165
L DP GNS IE Y + + S Y R+ E+N + I D +E
Sbjct: 200 LDDPAGNSWIE-YKPGEPQHKWSHTQYVRTDEQNVQVGIITRDQLEQRRQEQLKQLANRE 258
Query: 166 --PSKN---------YVEEAQEEFNPKNEVLIFNLLCPECNSPIEGRMKMLDIPHFKEVI 312
PS++ ++ +A + N NEV F CP C E MK ++IPHFKEVI
Sbjct: 259 RNPSESVKVGSANPQFLSDATDIENFNNEVQTFRASCPSCTQECETHMKPVNIPHFKEVI 318
Query: 313 VMASNCDNCGFKENEVKGGCGISEKARRITLKIETPEDLTRDFLKSDTAAMKIPELEIET 492
+M++ CD+CG+K NEVK G I +K RRITL + DL+RD LKS+T +M IPEL ++
Sbjct: 319 IMSTVCDHCGYKSNEVKTGGAIPDKGRRITLYCDDAADLSRDILKSETCSMVIPELHLDI 378
Query: 493 EAGSLGGRFTTVEGILHQMADKLEETNPFLKGDSQTDTPTEVILSNLIQSLHNVGSGKRF 672
+ G+LGGRFTT+EG+L Q+ ++L E+ F + D T+ L +GK
Sbjct: 379 QEGTLGGRFTTLEGLLRQVYEEL-ESRIFTQTSDSMDEATKARWVEFFAKLKEAIAGK-V 436
Query: 673 GVTLIIEDPAGGSYIQDIFLPEKDPRLTVEDYERTFEENELLGLNDM 813
T+I+EDP GSYIQ+++ P+ DP +T+EDYERT E+NE LGL+D+
Sbjct: 437 KFTVIMEDPLAGSYIQNVYAPDPDPNMTIEDYERTKEQNEDLGLSDI 483
Score = 107 bits (266), Expect = 6e-23
Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 3/235 (1%)
Frame = +1
Query: 109 KEENEALAINEEDFVENEEPSKNYVEEAQEEFNPKNEVLIFNLLCPECNSPIEGRMKMLD 288
K EA A E++ + + + + V+ + + V LC C R+ +
Sbjct: 10 KPVGEAAAEVEDESIAEQNKANDGVKLTGAQDAMGHPVQEIESLCMNCGKNGTTRLLLTS 69
Query: 289 IPHFKEVIVMASNCDNCGFKENEVKGGCGISEKARRITLKIETPEDLTRDFLKSDTAAMK 468
IP+F+E+I+M+ +C +CGFK E++ I EK R LK+E ED R +KS+TA K
Sbjct: 70 IPYFREIIIMSFDCPHCGFKNCEIQPASQIQEKGSRYVLKVECREDFNRQVIKSETATCK 129
Query: 469 IPELEIETEAGSLGGRFTTVEGILHQMADKLEETNPFLKGDSQTDTPTEVILSNLIQSLH 648
EL+IE A G+ TTVEG+L +M D L + K D + + IQ +
Sbjct: 130 FVELDIEIPAKR--GQLTTVEGLLSEMIDDLSQDQEMRK---SIDEALYKKIDDFIQKVK 184
Query: 649 NV--GSGKRFGVTLIIEDPAGGSYIQDIFLP-EKDPRLTVEDYERTFEENELLGL 804
+ +T I++DPAG S+I+ + P E + + Y RT E+N +G+
Sbjct: 185 SYINCEPNTIPITFILDDPAGNSWIE--YKPGEPQHKWSHTQYVRTDEQNVQVGI 237
Score = 47.0 bits (110), Expect = 7e-05
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = +1
Query: 4 EFSVELVDPTGNSIIENYMAPKADPQLSVEHYKRSKEENEALAINE 141
+F+V + DP S I+N AP DP +++E Y+R+KE+NE L +++
Sbjct: 437 KFTVIMEDPLAGSYIQNVYAPDPDPNMTIEDYERTKEQNEDLGLSD 482
>sp|Q57950|Y530_METJA Hypothetical protein MJ0530
Length = 198
Score = 59.3 bits (142), Expect = 1e-08
Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Frame = +1
Query: 283 LDIPHFKEVIVMASNCDNCGFKENEVKGGCGISEKARRITLKIETPEDLTRDFLKSDTAA 462
+DIP+F V+ C+ C F+ ++V + E + I LKIE+ DL + ++S +A
Sbjct: 25 IDIPYFGPVLETTMICEKCNFRRSDVFP-LEVREPKKYI-LKIESERDLNKRVVRSSSAY 82
Query: 463 MKIPELEIETEAGSLG-GRFTTVEGILHQMADKLEETNPFLKGDSQTDTPTEVILSNLIQ 639
++IPEL +E + G L G + VEG+L+++ + L+ + + + Q E L +
Sbjct: 83 IQIPELGVEIKPGPLAEGFVSNVEGVLNRVDNILQTLIRWAETEEQKKKAEE-----LRE 137
Query: 640 SLHNVGSGKRFGVTLIIEDPAGGSYI 717
+ + GK TLI+ DP G S I
Sbjct: 138 RIKKLKEGKE-EATLILIDPLGHSAI 162
>sp|O58960|Y1223_PYRHO Hypothetical protein PH1223
Length = 223
Score = 54.7 bits (130), Expect = 3e-07
Identities = 47/184 (25%), Positives = 91/184 (49%), Gaps = 6/184 (3%)
Frame = +1
Query: 241 CPECNSPIEGRMKMLD----IPHFKEVIVMASNCDNCGFKENEVKGGCGISEKARRI-TL 405
CP C +G +K + IP+F EV+ C+ CG++ ++V + E+ R+ +
Sbjct: 33 CPICGG--KGTLKAIQFIHRIPYFGEVMESTVVCERCGYRNSDV---IILEEREPRLYEV 87
Query: 406 KIETPEDLTRDFLKSDTAAMKIPELEIETEAG-SLGGRFTTVEGILHQMADKLEETNPFL 582
K+E +DL ++S + +++ EL I+ E G + G + +EG+L + + L F
Sbjct: 88 KVEEEKDLFIRVVRSKSGTIELEELGIKIEPGPAAEGFVSNIEGVLERAKEVLLMARDFK 147
Query: 583 KGDSQTDTPTEVILSNLIQSLHNVGSGKRFGVTLIIEDPAGGSYIQDIFLPEKDPRLTVE 762
+ ++ + + L++ + V GK+ +T+ I DP G S + I K +LT E
Sbjct: 148 EQENDREAVRRI--DELLKYIEEVKEGKK-PLTVRIMDPFGNSAL--IGEKVKSRKLTKE 202
Query: 763 DYER 774
+ +
Sbjct: 203 EIRK 206
>sp|Q8BRB7|MYST4_MOUSE Histone acetyltransferase MYST4 (MYST protein 4) (MOZ, YBF2/SAS3,
SAS2 and TIP60 protein 4) (Querkopf protein)
Length = 1872
Score = 33.5 bits (75), Expect = 0.78
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 17/158 (10%)
Frame = +1
Query: 73 DPQLSVEHYKRSKEENEALAINEEDFVENEEPSKNYVEEAQEEFNPKNEVLIF---NLLC 243
+P++S+E KE+ L +EED E EEPS N +A +E + E +L
Sbjct: 1192 EPEISME-----KEDPVHLGDHEEDEDEEEEPSHNEDHDADDEDDGHMEAANMERGDLPR 1246
Query: 244 PECNSPIEGRMKMLDI----PHFKEVIVMASNCD---NCGFKENEVKGGCGISEKARRIT 402
+EG+ LD+ H ++M D +C + E+ G G + ++
Sbjct: 1247 ETFKDALEGQEAFLDLSIQPSHSNPEVLMNCGVDLTMSCNSEPKELAGDTGTAPES---- 1302
Query: 403 LKIETPEDLT--RDFLKSDTAAMKIPE-----LEIETE 495
E PE+ T +D SD ++ E +EI++E
Sbjct: 1303 -DAEPPEEQTQKQDQKNSDGVDAELEEGGPAAVEIDSE 1339
>sp|P47368|TOP1_MYCGE DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
enzyme) (Swivelase)
Length = 709
Score = 32.3 bits (72), Expect = 1.7
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
Frame = +1
Query: 67 KADPQLSVEHYKRSKEENEALAINEEDFVENEEPSK-NYVEEAQEEF------------- 204
K+D +L+ ++ K+E E + E D + +P Y + E+F
Sbjct: 594 KSDVKLAENSIQKVKKEKELV---ERDCPKCNQPLVYRYTKRGNEKFVGCSDFPKCKYSE 650
Query: 205 --NPKNEVLIFNL--LCPECNSPIEGRMKMLDIPHFKEVIVMASNCDNCGF 345
NPK ++ + L LCPECN+ + R + K+ + SN NC F
Sbjct: 651 FSNPKPKLTLETLDELCPECNNKLVKRRTKFNA---KKTFIGCSNFPNCRF 698
>sp|P33334|PRP8_YEAST Pre-mRNA splicing factor PRP8
Length = 2413
Score = 32.0 bits (71), Expect = 2.3
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = +1
Query: 43 IIENYMAPKADPQLSVEHYKRSKEENEA----------LAINEEDFVENEEPSKNYVEEA 192
IIE Y+ KAD +S HY R + + A L +++NE+ + +++
Sbjct: 811 IIERYIKSKADAWVSAAHYNRERIKRGAHVEKTMVKKNLGRLTRLWIKNEQERQRQIQKN 870
Query: 193 QEEFNPKNEVLIFNLL 240
E P+ IF+++
Sbjct: 871 GPEITPEEATTIFSVM 886
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.137 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,867,374
Number of Sequences: 369166
Number of extensions: 1664481
Number of successful extensions: 6267
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6170
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)