Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_C18
(844 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 273 3e-73
sp|P61277|CATK_MACMU Cathepsin K precursor >gi|47117667|sp|... 273 3e-73
sp|Q9GLE3|CATK_PIG Cathepsin K precursor 273 4e-73
sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein) 272 1e-72
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 271 2e-72
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 270 4e-72
sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine protei... 270 4e-72
sp|P55097|CATK_MOUSE Cathepsin K precursor 270 5e-72
sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precu... 268 1e-71
sp|O35186|CATK_RAT Cathepsin K precursor 268 1e-71
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 273 bits (699), Expect = 3e-73
Identities = 135/286 (47%), Positives = 190/286 (66%), Gaps = 6/286 (2%)
Frame = +2
Query: 5 NAEWQVFKTKFNKNYT-AIDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLT 181
+ W+++K K Y +DE+ R+ IW +N+KYI HN++ LG H++ L +N D+T
Sbjct: 23 DTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMT 82
Query: 182 YKEF-EKLYLLSKNIEYNDGID--YLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGSCWA 352
+E +K+ L + ++ D Y+P PDSVD+R KGYVT VKNQGQCGSCWA
Sbjct: 83 SEEVVQKMTGLKVPLSHSRSNDTLYIPEWE-GRAPDSVDYRKKGYVTPVKNQGQCGSCWA 141
Query: 353 FSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYI-SSHGIESEDNY 529
FS+ G+LEGQ +K L N+S Q LVDCV++N GC GG+M AF+Y+ + GI+SED Y
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAY 201
Query: 530 PYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQYKQ 706
PY ++ +C+++ + A C+G++ I NEK L AVA VGP+SVAID SFQ Y +
Sbjct: 202 PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSK 261
Query: 707 GVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWGMNGY 844
GVYY+ C+ NHAVL VGYG++ G+K+W++KNSWG +WG GY
Sbjct: 262 GVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGY 307
>sp|P61277|CATK_MACMU Cathepsin K precursor
sp|P61276|CATK_MACFA Cathepsin K precursor
Length = 329
Score = 273 bits (699), Expect = 3e-73
Identities = 135/287 (47%), Positives = 191/287 (66%), Gaps = 7/287 (2%)
Frame = +2
Query: 5 NAEWQVFKTKFNKNYTA-IDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLT 181
+ W+++K K Y + +DE+ R+ IW +N+KYI HN++ LG H++ L +N D+T
Sbjct: 23 DTHWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMT 82
Query: 182 YKEFEK----LYLLSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGSCW 349
+E + L + + + ND + Y+P PDSVD+R KGYVT VKNQGQCGSCW
Sbjct: 83 NEEVVQKMTGLKVPASHSRSNDTL-YIPDWE-GRAPDSVDYRKKGYVTPVKNQGQCGSCW 140
Query: 350 AFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYI-SSHGIESEDN 526
AFS+ G+LEGQ +K L N+S Q LVDCV++N GC GG+M AF+Y+ + GI+SED
Sbjct: 141 AFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDA 200
Query: 527 YPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQYK 703
YPY ++ +C+++ + A C+G++ I NEK L AVA VGP+SVAID SFQ Y
Sbjct: 201 YPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYS 260
Query: 704 QGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWGMNGY 844
+GVYY+ C+ NHAVL VGYG++ G+K+W++KNSWG +WG GY
Sbjct: 261 KGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGY 307
>sp|Q9GLE3|CATK_PIG Cathepsin K precursor
Length = 330
Score = 273 bits (698), Expect = 4e-73
Identities = 134/287 (46%), Positives = 190/287 (66%), Gaps = 7/287 (2%)
Frame = +2
Query: 5 NAEWQVFKTKFNKNYTA-IDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLT 181
+ +W+++K + K Y + +DE+ R+ IW +N+K+I HN++ LG H++ L +N D+T
Sbjct: 24 DTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMT 83
Query: 182 YKEFEK----LYLLSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGSCW 349
+E + L + + ND + Y+P PDS+D+R KGYVT VKNQGQCGSCW
Sbjct: 84 SEEVVQKMTGLKVPPSHSRSNDTL-YIPDWE-GRTPDSIDYRKKGYVTPVKNQGQCGSCW 141
Query: 350 AFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYI-SSHGIESEDN 526
AFS+ G+LEGQ +K L N+S Q LVDCV++N GC GG+M AF+Y+ + GI+SED
Sbjct: 142 AFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDA 201
Query: 527 YPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQYK 703
YPY + NC+++ + A C+G++ I NEK L AVA VGP+SVAID SFQ Y
Sbjct: 202 YPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYS 261
Query: 704 QGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWGMNGY 844
+GVYY+ C+ NHAVL VGYG++ G K+W++KNSWG +WG GY
Sbjct: 262 KGVYYDENCNSDNLNHAVLAVGYGIQKGKKHWIIKNSWGENWGNKGY 308
>sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein)
Length = 329
Score = 272 bits (695), Expect = 1e-72
Identities = 134/287 (46%), Positives = 190/287 (66%), Gaps = 7/287 (2%)
Frame = +2
Query: 5 NAEWQVFKTKFNKNYTA-IDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLT 181
+ +W+++K ++K Y + +DE+ R+ IW +N+K+I HN++ LG H++ L +N D+T
Sbjct: 23 DTQWELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMT 82
Query: 182 YKEFEK----LYLLSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGSCW 349
+E + L + ND + Y+P PDS+D+R KGYVT VKNQGQCGSCW
Sbjct: 83 SEEVVQKMTGLKVPPSRSHSNDTL-YIPDWE-GRTPDSIDYRKKGYVTPVKNQGQCGSCW 140
Query: 350 AFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYIS-SHGIESEDN 526
AFS+ G+LEGQ +K L N+S Q LVDCV++N GC GG+M AF+Y+ + GI+SED
Sbjct: 141 AFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENYGCGGGYMTNAFQYVQRNRGIDSEDA 200
Query: 527 YPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQYK 703
YPY + +C+++ + A C+G++ I NEK L AVA VGP+SVAID SFQ Y
Sbjct: 201 YPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYS 260
Query: 704 QGVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWGMNGY 844
+GVYY+ C NHAVL VGYG++ G+K+W++KNSWG SWG GY
Sbjct: 261 KGVYYDENCSSDNVNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGY 307
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 271 bits (693), Expect = 2e-72
Identities = 142/288 (49%), Positives = 183/288 (63%), Gaps = 8/288 (2%)
Frame = +2
Query: 5 NAEWQVFKTKFNKNYTAIDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLTY 184
+ +W +K + Y A +E R+ +W +N+K I+ HN +Y G H ++ +N F D+T
Sbjct: 26 DTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTN 85
Query: 185 KEFEKLYLLSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGSCWAFSTT 364
+EF ++ +N ++ G + PL +D LP SVDWR KGYVT VKNQ QCGSCWAFS T
Sbjct: 86 EEFRQMMGCFRNQKFRKGKVFREPLFLD-LPKSVDWRKKGYVTPVKNQKQCGSCWAFSAT 144
Query: 365 GSLEGQHFRKHKVLQNISEQQLVDCVTK--NSGCNGGWMNIAFEYISSH-GIESEDNYPY 535
G+LEGQ FRK L ++SEQ LVDC N GCNGG+M AF+Y+ + G++SE++YPY
Sbjct: 145 GALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPY 204
Query: 536 QAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQYKQGV 712
A C + VAN GF + EK L AVATVGPISVA+D G+ SFQ YK G+
Sbjct: 205 VAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGI 264
Query: 713 YYEAKCDPTIQNHAVLVVGYGVE----NGHKYWLVKNSWGPSWGMNGY 844
Y+E C +H VLVVGYG E N KYWLVKNSWGP WG NGY
Sbjct: 265 YFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGY 312
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 270 bits (690), Expect = 4e-72
Identities = 124/281 (44%), Positives = 180/281 (64%), Gaps = 4/281 (1%)
Frame = +2
Query: 14 WQVFKTKFNKNYTAIDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLTYKEF 193
W +K +NK Y D+ R+ IW +N+K+IQ HN+++DLG +++LG+N+F+D+T++EF
Sbjct: 21 WHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEF 80
Query: 194 EKLYLLSKNIEYNDGIDYLPPLNIDN--LPDSVDWRTKGYVTNVKNQGQCGSCWAFSTTG 367
+ YL + +D + + P +N +PD +DWR GYVT VK+QG CGSCWAFSTTG
Sbjct: 81 KAKYLTEMS-RASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSCWAFSTTG 139
Query: 368 SLEGQHFRKHKVLQNISEQQLVDCVTK--NSGCNGGWMNIAFEYISSHGIESEDNYPYQA 541
++EGQ+ + + + SEQQLVDC N+GC+GG M A++Y+ G+E+E +YPY A
Sbjct: 140 TMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGLMENAYQYLKQFGLETESSYPYTA 199
Query: 542 KQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGYSFQQYKQGVYYE 721
+G C ++K VA G+ ++S +E +L V P +VA+DV F Y+ G+Y
Sbjct: 200 VEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVESDFMMYRSGIYQS 259
Query: 722 AKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWGMNGY 844
C P NHAVL VGYG + G YW+VKNSWG WG GY
Sbjct: 260 QTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGY 300
>sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine proteinase 1) [Contains: Cathepsin
L heavy chain; Cathepsin L light chain]
Length = 341
Score = 270 bits (690), Expect = 4e-72
Identities = 147/293 (50%), Positives = 191/293 (65%), Gaps = 15/293 (5%)
Frame = +2
Query: 11 EWQVFKTKFNKNYT-AIDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLTYK 187
EW FK + KNY +E R I+ EN I HN ++ G S L +N+++DL +
Sbjct: 28 EWHTFKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHH 87
Query: 188 EFEKL-----YLLSKNIEYND----GIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCG 340
EF +L Y L K + D G+ ++ P ++ LP SVDWRTKG VT VK+QG CG
Sbjct: 88 EFRQLMNGFNYTLHKQLRAADESFKGVTFISPAHV-TLPKSVDWRTKGAVTAVKDQGHCG 146
Query: 341 SCWAFSTTGSLEGQHFRKHKVLQNISEQQLVDCVTK--NSGCNGGWMNIAFEYISSH-GI 511
SCWAFS+TG+LEGQHFRK VL ++SEQ LVDC TK N+GCNGG M+ AF YI + GI
Sbjct: 147 SCWAFSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGI 206
Query: 512 ESEDNYPYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-S 688
++E +YPY+A +C F+K V A +GF +I +EK +A AVATVGP+SVAID + S
Sbjct: 207 DTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHES 266
Query: 689 FQQYKQGVYYEAKCDPTIQNHAVLVVGYGV-ENGHKYWLVKNSWGPSWGMNGY 844
FQ Y +GVY E +CD +H VLVVG+G E+G YWLVKNSWG +WG G+
Sbjct: 267 FQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGF 319
>sp|P55097|CATK_MOUSE Cathepsin K precursor
Length = 329
Score = 270 bits (689), Expect = 5e-72
Identities = 134/286 (46%), Positives = 186/286 (65%), Gaps = 6/286 (2%)
Frame = +2
Query: 5 NAEWQVFKTKFNKNYTA-IDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLT 181
+ +W+++K K Y + +DE+ R+ IW +N+K I HN++ LG H++ L +N D+T
Sbjct: 23 DTQWELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASLGVHTYELAMNHLGDMT 82
Query: 182 YKEFEKLYL---LSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGSCWA 352
+E + + + Y++ Y P +PDS+D+R KGYVT VKNQGQCGSCWA
Sbjct: 83 SEEVVQKMTGLRIPPSRSYSNDTLYTPEWE-GRVPDSIDYRKKGYVTPVKNQGQCGSCWA 141
Query: 353 FSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYISSH-GIESEDNY 529
FS+ G+LEGQ +K L +S Q LVDCVT+N GC GG+M AF+Y+ + GI+SED Y
Sbjct: 142 FSSAGALEGQLKKKTGKLLALSPQNLVDCVTENYGCGGGYMTTAFQYVQQNGGIDSEDAY 201
Query: 530 PYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQYKQ 706
PY + +C+++ + A C+G++ I NEK L AVA VGPISV+ID SFQ Y +
Sbjct: 202 PYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSR 261
Query: 707 GVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWGMNGY 844
GVYY+ CD NHAVLVVGYG + G K+W++KNSWG SWG GY
Sbjct: 262 GVYYDENCDRDNVNHAVLVVGYGTQKGSKHWIIKNSWGESWGNKGY 307
>sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precursor
Length = 323
Score = 268 bits (686), Expect = 1e-71
Identities = 141/284 (49%), Positives = 180/284 (63%), Gaps = 7/284 (2%)
Frame = +2
Query: 14 WQVFKTKFNKNYT-AIDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLTYKE 190
W+ FK K+ + Y A ++ R+ I+ +N KYI+ N KY+ G + +L +N+F D+T +E
Sbjct: 20 WEHFKGKYGRQYVDAEEDSYRRVIFEQNQKYIEEFNKKYENGEVTFNLAMNKFGDMTLEE 79
Query: 191 FEKLYLLSKNIEYNDG--IDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGSCWAFSTT 364
F + + NI + P VDWRTKG VT VK+QGQCGSCWAFSTT
Sbjct: 80 FNAV--MKGNIPRRSAPVSVFYPKKETGPQATEVDWRTKGAVTPVKDQGQCGSCWAFSTT 137
Query: 365 GSLEGQHFRKHKVLQNISEQQLVDCVTK--NSGCNGGWMNIAFEYI-SSHGIESEDNYPY 535
GSLEGQHF K L +++EQQLVDC GCNGGWMN AF+YI +++GI++E YPY
Sbjct: 138 GSLEGQHFLKTGSLISLAEQQLVDCSRPYGPQGCNGGWMNDAFDYIKANNGIDTEAAYPY 197
Query: 536 QAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQYKQGV 712
+A+ G+C FD + V A C G NI S +E L AV +GPISV ID + SFQ Y GV
Sbjct: 198 EARDGSCRFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGV 257
Query: 713 YYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWGMNGY 844
YYE C P+ +HAVL VGYG E G +WLVKNSW SWG GY
Sbjct: 258 YYEPSCSPSYLDHAVLAVGYGSEGGQDFWLVKNSWATSWGDAGY 301
>sp|O35186|CATK_RAT Cathepsin K precursor
Length = 329
Score = 268 bits (685), Expect = 1e-71
Identities = 132/286 (46%), Positives = 187/286 (65%), Gaps = 6/286 (2%)
Frame = +2
Query: 5 NAEWQVFKTKFNKNYTA-IDELIRKTIWIENIKYIQHHNVKYDLGHHSHSLGINEFSDLT 181
+ +W+++K K Y + +DE+ R+ IW +N+K I HN++ LG H++ L +N D+T
Sbjct: 23 DTQWELWKKTHGKQYNSKVDEISRRLIWEKNLKKISVHNLEASLGAHTYELAMNHLGDMT 82
Query: 182 YKEFEKLYL---LSKNIEYNDGIDYLPPLNIDNLPDSVDWRTKGYVTNVKNQGQCGSCWA 352
+E + + + +++ Y P +PDS+D+R KGYVT VKNQGQCGSCWA
Sbjct: 83 SEEVVQKMTGLRVPPSRSFSNDTLYTPEWE-GRVPDSIDYRKKGYVTPVKNQGQCGSCWA 141
Query: 353 FSTTGSLEGQHFRKHKVLQNISEQQLVDCVTKNSGCNGGWMNIAFEYISSH-GIESEDNY 529
FS+ G+LEGQ +K L +S Q LVDCV++N GC GG+M AF+Y+ + GI+SED Y
Sbjct: 142 FSSAGALEGQLKKKTGKLLALSPQNLVDCVSENYGCGGGYMTTAFQYVQQNGGIDSEDAY 201
Query: 530 PYQAKQGNCVFDKSKVVANCKGFQNINSCNEKDLAVAVATVGPISVAIDVGY-SFQQYKQ 706
PY + +C+++ + A C+G++ I NEK L AVA VGP+SV+ID SFQ Y +
Sbjct: 202 PYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPVSVSIDASLTSFQFYSR 261
Query: 707 GVYYEAKCDPTIQNHAVLVVGYGVENGHKYWLVKNSWGPSWGMNGY 844
GVYY+ CD NHAVLVVGYG + G+KYW++KNSWG SWG GY
Sbjct: 262 GVYYDENCDRDNVNHAVLVVGYGTQKGNKYWIIKNSWGESWGNKGY 307
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,176,229
Number of Sequences: 369166
Number of extensions: 2112714
Number of successful extensions: 6622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5981
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)