Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_C16
(856 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90632|MOT3_CHICK Monocarboxylate transporter 3 (MCT 3) ... 39 0.018
sp|Q58086|Y672_METJA Hypothetical protein MJ0672 33 0.77
sp|O14286|YD01_SCHPO Putative ABC transporter C15A10.01 in ... 32 2.2
sp|Q8BN82|S17A5_MOUSE Sialin (Solute carrier family 17 memb... 32 2.9
sp|Q12402|YOP1_YEAST Protein YOP1 (YIP1 partner protein 1) ... 32 2.9
sp|Q51330|OXLT_OXAFO Oxalate:formate antiporter (OFA) (Oxal... 31 5.0
sp|O15403|MOT7_HUMAN Monocarboxylate transporter 7 (MCT 7) ... 31 5.0
sp|P31602|CITN_KLEPN Citrate-sodium symport (Citrate transp... 30 6.5
sp|Q74D04|SYT_GEOSL Threonyl-tRNA synthetase (Threonine--tR... 30 6.5
sp|P45522|KEFB_ECOLI Glutathione-regulated potassium-efflux... 30 6.5
>sp|Q90632|MOT3_CHICK Monocarboxylate transporter 3 (MCT 3) (Retinal epithelial membrane
protein)
Length = 542
Score = 38.9 bits (89), Expect = 0.018
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Frame = +1
Query: 85 YLLVFGAFLIHLSLGSFYNFGNVQGNIVDYMQNYSISKHVDWDSTHWIYG---TMIFGLG 255
++++FG F+I G Y F + Y + HV + T WI M++G G
Sbjct: 24 WIVLFGCFVI---TGFSYAFPKA---VSVYFKELMKDFHVGYSDTAWISSIMLAMLYGTG 77
Query: 256 TSLSLGGYIEKEIGPSITVLIGGFISSFNVCLMMVTLDTYLFVVVISYGFISGLGMGIAY 435
S+ + + G +LIGG ++S + L T T + + ++ G ++GLGM + +
Sbjct: 78 PVCSI---MVNQFGCRPVMLIGGLLASSGMILASFT--TNIIELYLTAGVLTGLGMALNF 132
Query: 436 GVAL 447
+L
Sbjct: 133 QPSL 136
>sp|Q58086|Y672_METJA Hypothetical protein MJ0672
Length = 432
Score = 33.5 bits (75), Expect = 0.77
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = +1
Query: 196 KHVDWDSTHWIYGTMIFGLGTSLSLGGYIEKE-----IGPSITVLIGGFISSFNVCLMMV 360
K +DW GT+I G +L LGG I K + + ++G V L +V
Sbjct: 290 KKIDW-------GTLIL-FGGALCLGGVIVKSGANTFLSEKLIAILGNLTPI--VLLFLV 339
Query: 361 TLDTYLFVVVISYGFISGLGMGIAYGVALGVP 456
T + IS ++G+ + I +GV+LG+P
Sbjct: 340 VTITIILTNFISNTGLTGIIVPILFGVSLGIP 371
>sp|O14286|YD01_SCHPO Putative ABC transporter C15A10.01 in chromosome I
Length = 693
Score = 32.0 bits (71), Expect = 2.2
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -1
Query: 232 RKSNVLNPNQHVLKYYNFAYSLLYFLEHYQNYKNYQVKDELKKLQKPIN 86
RKSN+L P QH+L++ NFA + L + N + + + K ++P+N
Sbjct: 32 RKSNIL-PLQHILRFSNFASKQCFPLRNGNNSASKALWNNKSKEKEPLN 79
>sp|Q8BN82|S17A5_MOUSE Sialin (Solute carrier family 17 member 5) (Sodium/sialic acid
cotransporter)
Length = 495
Score = 31.6 bits (70), Expect = 2.9
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +1
Query: 196 KHVDWDSTH--WIYGTMIFGLGTSLSLGGYIEKEIGPSITVLIGGFISSFNVCLMMVTLD 369
K WD+ WI G+ +G + GGYI +G + L+G I +V + L
Sbjct: 99 KKYKWDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKL--LLGLGILGTSVFTLFTPLA 156
Query: 370 TYLFVV-VISYGFISGLGMGIAY 435
L VV ++ + GLG G+ +
Sbjct: 157 ADLGVVTLVVLRALEGLGEGVTF 179
>sp|Q12402|YOP1_YEAST Protein YOP1 (YIP1 partner protein 1) (Ypt-interacting protein 2)
Length = 180
Score = 31.6 bits (70), Expect = 2.9
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Frame = +3
Query: 486 FDSLQHSILYYNEKKNIENLPKSFFVLGLVFAFLQII-------GSMLIAFGSQENETGM 644
FD+ + +N NLPKS+ V GL FA+L +I G +L F +
Sbjct: 15 FDTKYSGNRILQQLENKTNLPKSYLVAGLGFAYLLLIFINVGGVGEILSNFAGFVLPAYL 74
Query: 645 TDISTETENECCAIFQNSLNHDQTDFEPYQILLEF----DFWILWIVEFLTSFWIYFVTQ 812
+ ++ +T + D T Y I+ F +FW I+ + +W F+
Sbjct: 75 SLVALKTPT----------STDDTQLLTYWIVFSFLSVIEFWSKAILYLIPFYW--FLKT 122
Query: 813 VYSRY 827
V+ Y
Sbjct: 123 VFLIY 127
>sp|Q51330|OXLT_OXAFO Oxalate:formate antiporter (OFA) (Oxalate:formate antiport protein)
(Oxalate:formate exchange protein)
Length = 418
Score = 30.8 bits (68), Expect = 5.0
Identities = 24/110 (21%), Positives = 42/110 (38%)
Frame = +3
Query: 462 GFGISATIFDSLQHSILYYNEKKNIENLPKSFFVLGLVFAFLQIIGSMLIAFGSQENETG 641
G+G+ F L S+L +E + +F GL+ L I+ + +I F Q+
Sbjct: 149 GYGLGVLPFLPLISSVL------KVEGVGAAFMYTGLIMGILIILIAFVIRFPGQQGAKK 202
Query: 642 MTDISTETENECCAIFQNSLNHDQTDFEPYQILLEFDFWILWIVEFLTSF 791
++ + DF ++L FW+LW F +F
Sbjct: 203 QIVVTDK------------------DFNSGEMLRTPQFWVLWTAFFSVNF 234
Score = 30.4 bits (67), Expect = 6.5
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 271 GGYIEKEIGPSITVLIGGFISSFNVCLM-MVTLDTYLFVVVISYGFISGLGMGIAYGVAL 447
GGY + GP I ++ GG + M MV L+ + ++G G+GI YG+A+
Sbjct: 73 GGYFVDKFGPRIPLMFGGAMVLAGWTFMGMVDSVPALYALYT----LAGAGVGIVYGIAM 128
>sp|O15403|MOT7_HUMAN Monocarboxylate transporter 7 (MCT 7) (MCT 6)
Length = 523
Score = 30.8 bits (68), Expect = 5.0
Identities = 23/94 (24%), Positives = 41/94 (43%)
Frame = +1
Query: 223 WIYGTMIFGLGTSLSLGGYIEKEIGPSITVLIGGFISSFNVCLMMVTLDTYLFVVVISYG 402
WI +F L S L + G + V++GG + S ++ + + + ++ G
Sbjct: 65 WIISICVFVLTFSAPLATVLSNRFGHRLVVMLGGLLVSTG--MVAASFSQEVSHMYVAIG 122
Query: 403 FISGLGMGIAYGVALGVPIKDSEFLQQYSIVCSI 504
ISGL G + V I F ++ SIV ++
Sbjct: 123 IISGL--GYCFSFLPTVTILSQYFGKRRSIVTAV 154
>sp|P31602|CITN_KLEPN Citrate-sodium symport (Citrate transporter) (Citrate carrier
protein)
Length = 446
Score = 30.4 bits (67), Expect = 6.5
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 304 ITVLIGGFISSFNVCLMMVTLDTYLFVVVISYGFISGLGMGIAYGVALGVPI 459
I VLI G I S N L++ +L Y+ +++ G + GIA G+ G+P+
Sbjct: 121 IAVLITGAILSVNRRLLLKSLLGYIPTILM--GIVGASIFGIAIGLVFGIPV 170
>sp|Q74D04|SYT_GEOSL Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 636
Score = 30.4 bits (67), Expect = 6.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 459 QGFGISATIFDSLQHSILYYNEKKNIENLPKSFFVLGLV 575
QGFGI + L H ++Y ++ ++ +LP FF LG V
Sbjct: 326 QGFGIKP--MNCLSHMMIYKSQLRSYRDLPLRFFELGTV 362
>sp|P45522|KEFB_ECOLI Glutathione-regulated potassium-efflux system protein kefB
(K(+)/H(+) antiporter) (NEM-activatable K(+)/H(+)
antiporter)
Length = 601
Score = 30.4 bits (67), Expect = 6.5
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 16/101 (15%)
Frame = +1
Query: 226 IYGTMIF--GLGTSLSLGGYI--------------EKEIGPSITVLIGGFISSFNVCLMM 357
+ G+ +F LG S++LG +I E I P +L+G F S + L +
Sbjct: 225 VLGSALFMDALGLSMALGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFISVGMSLNL 284
Query: 358 VTLDTYLFVVVISYGFISGLGMGIAYGVALGVPIKDSEFLQ 480
L T+L VVIS + + + + Y +A ++ SE +Q
Sbjct: 285 GVLYTHLLWVVISVVVLVAVKILVLYLLARLYGVRSSERMQ 325
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,400,745
Number of Sequences: 369166
Number of extensions: 1930945
Number of successful extensions: 5320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5315
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)