Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_C08
(820 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 457 e-128
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 457 e-128
sp|P53458|ACT5_DIPDE Actin-5 456 e-128
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 456 e-128
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 456 e-128
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 456 e-128
sp|P92176|ACT2_LUMTE Actin-2 455 e-128
sp|P12716|ACTC_PISOC Actin, cytoplasmic 455 e-128
sp|P53470|ACT1_SCHMA Actin-1 455 e-128
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 455 e-128
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 457 bits (1175), Expect = e-128
Identities = 224/240 (93%), Positives = 234/240 (97%)
Frame = +2
Query: 5 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 184
IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTE
Sbjct: 137 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTE 196
Query: 185 RGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERF 364
RGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERF
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERF 256
Query: 365 RCPEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQK 544
RCPEA+FQPSFLG+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQK
Sbjct: 257 RCPEAMFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQK 316
Query: 545 EISALAPPTMKIKIVAPPERKYSVWIVGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 724
EI+ALAPPTMKIKI+APPERKYSVWI GSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 317 EITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 457 bits (1175), Expect = e-128
Identities = 224/240 (93%), Positives = 235/240 (97%)
Frame = +2
Query: 5 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 184
IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTE
Sbjct: 137 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTE 196
Query: 185 RGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERF 364
RGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TA++SSSLEKSYELPDGQVITIGNERF
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTATSSSSLEKSYELPDGQVITIGNERF 256
Query: 365 RCPEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQK 544
RCPEALFQPSFLG+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQK
Sbjct: 257 RCPEALFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQK 316
Query: 545 EISALAPPTMKIKIVAPPERKYSVWIVGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 724
EI+ALAPPTMKIKI+APPERKYSVWI GSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 317 EITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53458|ACT5_DIPDE Actin-5
Length = 371
Score = 456 bits (1173), Expect = e-128
Identities = 226/240 (94%), Positives = 233/240 (97%)
Frame = +2
Query: 5 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 184
IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE
Sbjct: 132 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 191
Query: 185 RGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERF 364
RGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM A++SS+LEKSYELPDGQVITIGNERF
Sbjct: 192 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMSNAASSSALEKSYELPDGQVITIGNERF 251
Query: 365 RCPEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQK 544
RCPEALFQPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMYPGI+DRMQK
Sbjct: 252 RCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGISDRMQK 311
Query: 545 EISALAPPTMKIKIVAPPERKYSVWIVGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 724
EISALAP TMKIKIVAPPERKYSVWI GSILASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 312 EISALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 371
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 456 bits (1173), Expect = e-128
Identities = 223/240 (92%), Positives = 234/240 (97%)
Frame = +2
Query: 5 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 184
IQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTE
Sbjct: 137 IQAVLSLYASGRTTGIVIDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTE 196
Query: 185 RGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERF 364
RGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERF
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERF 256
Query: 365 RCPEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQK 544
RCPEA++QPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQK
Sbjct: 257 RCPEAMYQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQK 316
Query: 545 EISALAPPTMKIKIVAPPERKYSVWIVGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 724
EI+ALAPPTMKIKI+APPERKYSVWI GSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 317 EITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 456 bits (1173), Expect = e-128
Identities = 224/240 (93%), Positives = 233/240 (97%)
Frame = +2
Query: 5 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 184
IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTE
Sbjct: 137 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTE 196
Query: 185 RGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERF 364
RGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA+ SSSLEKSYELPDGQVITIGNERF
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAATSSSLEKSYELPDGQVITIGNERF 256
Query: 365 RCPEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQK 544
RCPEA+FQPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQK
Sbjct: 257 RCPEAVFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQK 316
Query: 545 EISALAPPTMKIKIVAPPERKYSVWIVGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 724
EI+ALAPPTMKIKI+APPERKYSVWI GSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 317 EITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 456 bits (1173), Expect = e-128
Identities = 223/240 (92%), Positives = 234/240 (97%)
Frame = +2
Query: 5 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 184
IQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTE
Sbjct: 137 IQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTE 196
Query: 185 RGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERF 364
RGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERF
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERF 256
Query: 365 RCPEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQK 544
RCPEA+FQPSFLG+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQK
Sbjct: 257 RCPEAMFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQK 316
Query: 545 EISALAPPTMKIKIVAPPERKYSVWIVGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 724
EI+ALAPPTMKIKI+APPERKYSVWI GSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 317 EITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 455 bits (1171), Expect = e-128
Identities = 225/240 (93%), Positives = 233/240 (97%)
Frame = +2
Query: 5 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 184
IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE
Sbjct: 137 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 196
Query: 185 RGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERF 364
RGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TASASSSLEKSYELPDGQVITIGNERF
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMNTASASSSLEKSYELPDGQVITIGNERF 256
Query: 365 RCPEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQK 544
RCPEA+F SFLG+ESVGIHETTYNSIMKCDVDIRKDLYAN VLSGG+TM+PGIADRMQK
Sbjct: 257 RCPEAMFHASFLGMESVGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQK 316
Query: 545 EISALAPPTMKIKIVAPPERKYSVWIVGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 724
EI+ALAPPTMKIKI+APPERKYSVWI GSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 317 EITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P12716|ACTC_PISOC Actin, cytoplasmic
Length = 376
Score = 455 bits (1171), Expect = e-128
Identities = 223/240 (92%), Positives = 234/240 (97%)
Frame = +2
Query: 5 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 184
IQAVLSLYASGRTTGIV DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE
Sbjct: 137 IQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 196
Query: 185 RGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERF 364
RGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TA++SSSLEKSYELPDGQVITIGNERF
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERF 256
Query: 365 RCPEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQK 544
RCPEALFQPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQK
Sbjct: 257 RCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQK 316
Query: 545 EISALAPPTMKIKIVAPPERKYSVWIVGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 724
E++ALAPPTMKIKI+APPERKYSVWI GSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 317 EVTALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53470|ACT1_SCHMA Actin-1
Length = 376
Score = 455 bits (1170), Expect = e-128
Identities = 225/240 (93%), Positives = 234/240 (97%)
Frame = +2
Query: 5 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 184
IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY+MKILTE
Sbjct: 137 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTE 196
Query: 185 RGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERF 364
RGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SS+LEKSYELPDGQVITIGNERF
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSALEKSYELPDGQVITIGNERF 256
Query: 365 RCPEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQK 544
RCPEALFQPSFLG+E+ GIHETTYNSIMKCDVDIRKDLY+N VLSGGSTMYPGIADRMQK
Sbjct: 257 RCPEALFQPSFLGMEASGIHETTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQK 316
Query: 545 EISALAPPTMKIKIVAPPERKYSVWIVGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 724
EISALAP TMKIKIVAPPERKYSVWI GSILASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 317 EISALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 455 bits (1170), Expect = e-128
Identities = 223/240 (92%), Positives = 233/240 (97%)
Frame = +2
Query: 5 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 184
IQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTE
Sbjct: 137 IQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTE 196
Query: 185 RGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERF 364
RGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERF
Sbjct: 197 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERF 256
Query: 365 RCPEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQK 544
RCPEA FQPSFLG+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQK
Sbjct: 257 RCPEATFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQK 316
Query: 545 EISALAPPTMKIKIVAPPERKYSVWIVGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 724
EI+ALAPPTMKIKI+APPERKYSVWI GSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 317 EITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,816,802
Number of Sequences: 369166
Number of extensions: 1939542
Number of successful extensions: 5856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5708
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)