Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_C05
(382 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WUL7|ARL3_MOUSE ADP-ribosylation factor-like protein 3 185 2e-47
sp|P36405|ARL3_HUMAN ADP-ribosylation factor-like protein 3 185 2e-47
sp|P37996|ARL3_RAT ADP-ribosylation factor-like protein 3 (... 184 7e-47
sp|O45379|ARL3_CAEEL ADP-ribosylation factor-like protein 3 147 6e-36
sp|P36404|ARL2_HUMAN ADP-ribosylation factor-like protein 2 134 5e-32
sp|Q9D0J4|ARL2_MOUSE ADP-ribosylation factor-like protein 2 132 2e-31
sp|O08697|ARL2_RAT ADP-ribosylation factor-like protein 2 132 2e-31
sp|Q19705|ARFM_CAEEL GTP-binding ADP-ribosylation factor ho... 122 3e-28
sp|Q06849|ARL2_DROME GTP-binding ADP-ribosylation factor ho... 120 1e-27
sp|P34728|ARF_CRYNE ADP-ribosylation factor 118 5e-27
>sp|Q9WUL7|ARL3_MOUSE ADP-ribosylation factor-like protein 3
Length = 182
Score = 185 bits (470), Expect = 2e-47
Identities = 89/126 (70%), Positives = 110/126 (87%)
Frame = +1
Query: 1 DLARKTTLPKSLAREQINQITPTQGFNVKTVQTKGFKLNVWDIGGERKIRPYWRNYFENT 180
D A KTTL K LA E I+ ITPTQGFN+K+VQ++GFKLNVWDIGG+RKIRPYWR+YFENT
Sbjct: 26 DNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT 85
Query: 181 YVLIYVIDSADKKRFTETSEEVNELLMESKLTGVPLLIYANKQDLMSAAPSSQISTGVNL 360
+LIYVIDSAD+KRF ET +E+ ELL E KL+ VP+LI+ANKQDL++AAP+S+I+ G+NL
Sbjct: 86 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL 145
Query: 361 LSIRDR 378
+IRDR
Sbjct: 146 HTIRDR 151
>sp|P36405|ARL3_HUMAN ADP-ribosylation factor-like protein 3
Length = 182
Score = 185 bits (470), Expect = 2e-47
Identities = 89/126 (70%), Positives = 110/126 (87%)
Frame = +1
Query: 1 DLARKTTLPKSLAREQINQITPTQGFNVKTVQTKGFKLNVWDIGGERKIRPYWRNYFENT 180
D A KTTL K LA E I+ ITPTQGFN+K+VQ++GFKLNVWDIGG+RKIRPYW+NYFENT
Sbjct: 26 DNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENT 85
Query: 181 YVLIYVIDSADKKRFTETSEEVNELLMESKLTGVPLLIYANKQDLMSAAPSSQISTGVNL 360
+LIYVIDSAD+KRF ET +E+ ELL E KL+ VP+LI+ANKQDL++AAP+S+I+ G+NL
Sbjct: 86 DILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL 145
Query: 361 LSIRDR 378
+IRDR
Sbjct: 146 HTIRDR 151
>sp|P37996|ARL3_RAT ADP-ribosylation factor-like protein 3 (ARD3)
Length = 182
Score = 184 bits (466), Expect = 7e-47
Identities = 87/126 (69%), Positives = 110/126 (87%)
Frame = +1
Query: 1 DLARKTTLPKSLAREQINQITPTQGFNVKTVQTKGFKLNVWDIGGERKIRPYWRNYFENT 180
D A KTTL K LA E I+ ITPTQGFN+K+VQ++GFKLNVWDIGG+RKIRPYWR+YFENT
Sbjct: 26 DNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT 85
Query: 181 YVLIYVIDSADKKRFTETSEEVNELLMESKLTGVPLLIYANKQDLMSAAPSSQISTGVNL 360
+LIYVIDSAD+KRF ET +E+ ELL E KL+ VP+L++ANKQDL++AAP+++I+ G+NL
Sbjct: 86 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLVFANKQDLLTAAPAAEIAEGLNL 145
Query: 361 LSIRDR 378
+IRDR
Sbjct: 146 HTIRDR 151
>sp|O45379|ARL3_CAEEL ADP-ribosylation factor-like protein 3
Length = 184
Score = 147 bits (372), Expect = 6e-36
Identities = 75/127 (59%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
Frame = +1
Query: 1 DLARKTTLPKSLAREQINQITPTQGFNVKTVQTKG-FKLNVWDIGGERKIRPYWRNYFEN 177
D A KTT+ K L+ E + +TPT+GFNVKTV G +LNVWDIGG+R IRPYW NY+EN
Sbjct: 26 DNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYEN 85
Query: 178 TYVLIYVIDSADKKRFTETSEEVNELLMESKLTGVPLLIYANKQDLMSAAPSSQISTGVN 357
LI+VIDS DKKRF E + E+ ELL E KL VP+LI+ANKQDL++AA S +I+ +N
Sbjct: 86 IDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTAASSEEITRKLN 145
Query: 358 LLSIRDR 378
L +RDR
Sbjct: 146 LDLLRDR 152
>sp|P36404|ARL2_HUMAN ADP-ribosylation factor-like protein 2
Length = 184
Score = 134 bits (338), Expect = 5e-32
Identities = 64/124 (51%), Positives = 88/124 (70%)
Frame = +1
Query: 1 DLARKTTLPKSLAREQINQITPTQGFNVKTVQTKGFKLNVWDIGGERKIRPYWRNYFENT 180
D A KTT+ K E I+ I+PT GFN+KT++ +GFKLN+WD+GG++ +R YWRNYFE+T
Sbjct: 25 DNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 84
Query: 181 YVLIYVIDSADKKRFTETSEEVNELLMESKLTGVPLLIYANKQDLMSAAPSSQISTGVNL 360
LI+V+DSAD++R + E+ LL+E +L G LLI+ANKQDL A S+ I + L
Sbjct: 85 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREALEL 144
Query: 361 LSIR 372
SIR
Sbjct: 145 DSIR 148
>sp|Q9D0J4|ARL2_MOUSE ADP-ribosylation factor-like protein 2
Length = 184
Score = 132 bits (333), Expect = 2e-31
Identities = 62/124 (50%), Positives = 87/124 (70%)
Frame = +1
Query: 1 DLARKTTLPKSLAREQINQITPTQGFNVKTVQTKGFKLNVWDIGGERKIRPYWRNYFENT 180
D A KTT+ K E ++ I+PT GFN+KT++ +GFKLN+WD+GG++ +R YWRNYFE+T
Sbjct: 25 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 84
Query: 181 YVLIYVIDSADKKRFTETSEEVNELLMESKLTGVPLLIYANKQDLMSAAPSSQISTGVNL 360
LI+V+DSAD++R + E+ LL+E +L G LLI+ANKQDL A + I + L
Sbjct: 85 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL 144
Query: 361 LSIR 372
SIR
Sbjct: 145 DSIR 148
>sp|O08697|ARL2_RAT ADP-ribosylation factor-like protein 2
Length = 184
Score = 132 bits (333), Expect = 2e-31
Identities = 62/124 (50%), Positives = 87/124 (70%)
Frame = +1
Query: 1 DLARKTTLPKSLAREQINQITPTQGFNVKTVQTKGFKLNVWDIGGERKIRPYWRNYFENT 180
D A KTT+ K E ++ I+PT GFN+KT++ +GFKLN+WD+GG++ +R YWRNYFE+T
Sbjct: 25 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 84
Query: 181 YVLIYVIDSADKKRFTETSEEVNELLMESKLTGVPLLIYANKQDLMSAAPSSQISTGVNL 360
LI+V+DSAD++R + E+ LL+E +L G LLI+ANKQDL A + I + L
Sbjct: 85 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL 144
Query: 361 LSIR 372
SIR
Sbjct: 145 DSIR 148
>sp|Q19705|ARFM_CAEEL GTP-binding ADP-ribosylation factor homolog protein evl-20
Length = 184
Score = 122 bits (306), Expect = 3e-28
Identities = 59/124 (47%), Positives = 85/124 (68%)
Frame = +1
Query: 1 DLARKTTLPKSLAREQINQITPTQGFNVKTVQTKGFKLNVWDIGGERKIRPYWRNYFENT 180
D A KTTL K E + I PT GF++KTV K F+LN+WD+GG++ +R YW+NYFE+T
Sbjct: 25 DNAGKTTLMKKFLDEPTDTIEPTLGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFEST 84
Query: 181 YVLIYVIDSADKKRFTETSEEVNELLMESKLTGVPLLIYANKQDLMSAAPSSQISTGVNL 360
LI+V+DS+D++R + SEE+ +LL E +L G LL+ ANK DL A + I+ ++L
Sbjct: 85 DALIWVVDSSDRERLLQCSEELKKLLGEERLAGASLLVLANKSDLPGAIDVNSIAQVLDL 144
Query: 361 LSIR 372
SI+
Sbjct: 145 HSIK 148
>sp|Q06849|ARL2_DROME GTP-binding ADP-ribosylation factor homolog 2 protein
Length = 184
Score = 120 bits (301), Expect = 1e-27
Identities = 57/123 (46%), Positives = 82/123 (66%)
Frame = +1
Query: 1 DLARKTTLPKSLAREQINQITPTQGFNVKTVQTKGFKLNVWDIGGERKIRPYWRNYFENT 180
D A KTT+ K E I+ I+PT GFN+KT++ G+ LN+WD+GG++ +R YWRNYFE+T
Sbjct: 25 DNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFEST 84
Query: 181 YVLIYVIDSADKKRFTETSEEVNELLMESKLTGVPLLIYANKQDLMSAAPSSQISTGVNL 360
L++V+DSAD+ R +E+ LL E +L G LL+ NKQDL A S++I ++L
Sbjct: 85 DGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHL 144
Query: 361 LSI 369
I
Sbjct: 145 EDI 147
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 118 bits (295), Expect = 5e-27
Identities = 58/126 (46%), Positives = 83/126 (65%)
Frame = +1
Query: 1 DLARKTTLPKSLAREQINQITPTQGFNVKTVQTKGFKLNVWDIGGERKIRPYWRNYFENT 180
D A KTT+ L +I PT GFNV+TV+ K VWD+GG+ KIRP WR+YF+NT
Sbjct: 26 DAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85
Query: 181 YVLIYVIDSADKKRFTETSEEVNELLMESKLTGVPLLIYANKQDLMSAAPSSQISTGVNL 360
+I+V+DS D++R TE EE+ +L E +L LL++ANKQDL +A +++I+ + L
Sbjct: 86 QGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGL 145
Query: 361 LSIRDR 378
S+R R
Sbjct: 146 HSLRQR 151
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,021,087
Number of Sequences: 369166
Number of extensions: 772947
Number of successful extensions: 2474
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2452
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)