Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_B20-1
(283 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28476|GBRR2_HUMAN Gamma-aminobutyric-acid receptor rho-... 29 2.9
sp|P47742|GBRR2_RAT Gamma-aminobutyric-acid receptor rho-2 ... 29 2.9
sp|P56476|GBRR2_MOUSE Gamma-aminobutyric-acid receptor rho-... 29 2.9
sp|P50572|GBRR1_RAT Gamma-aminobutyric-acid receptor rho-1 ... 29 3.8
sp|P24046|GBRR1_HUMAN Gamma-aminobutyric-acid receptor rho-... 29 3.8
sp|P56475|GBRR1_MOUSE Gamma-aminobutyric-acid receptor rho-... 29 3.8
>sp|P28476|GBRR2_HUMAN Gamma-aminobutyric-acid receptor rho-2 subunit precursor (GABA(A)
receptor)
Length = 465
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 281 DEMIHIYLFIINNT*NSHFLKFFSSISLFHRYYIRMNRIYHIFY 150
DE I + F+I + L F+SS ++R YI HIF+
Sbjct: 220 DEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYINFTLRRHIFF 263
>sp|P47742|GBRR2_RAT Gamma-aminobutyric-acid receptor rho-2 subunit precursor (GABA(A)
receptor)
Length = 465
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 281 DEMIHIYLFIINNT*NSHFLKFFSSISLFHRYYIRMNRIYHIFY 150
DE I + F+I + L F+SS ++R YI HIF+
Sbjct: 220 DEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYINFTLRRHIFF 263
>sp|P56476|GBRR2_MOUSE Gamma-aminobutyric-acid receptor rho-2 subunit precursor (GABA(A)
receptor)
Length = 465
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 281 DEMIHIYLFIINNT*NSHFLKFFSSISLFHRYYIRMNRIYHIFY 150
DE I + F+I + L F+SS ++R YI HIF+
Sbjct: 220 DEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYINFTLRRHIFF 263
>sp|P50572|GBRR1_RAT Gamma-aminobutyric-acid receptor rho-1 subunit precursor (GABA(A)
receptor)
Length = 474
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 281 DEMIHIYLFIINNT*NSHFLKFFSSISLFHRYYIRMNRIYHIFY 150
DE I + F+I + L F+SS ++R YI HIF+
Sbjct: 235 DERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTLRRHIFF 278
>sp|P24046|GBRR1_HUMAN Gamma-aminobutyric-acid receptor rho-1 subunit precursor (GABA(A)
receptor)
Length = 473
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 281 DEMIHIYLFIINNT*NSHFLKFFSSISLFHRYYIRMNRIYHIFY 150
DE I + F+I + L F+SS ++R YI HIF+
Sbjct: 234 DERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTLRRHIFF 277
>sp|P56475|GBRR1_MOUSE Gamma-aminobutyric-acid receptor rho-1 subunit precursor (GABA(A)
receptor)
Length = 474
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 281 DEMIHIYLFIINNT*NSHFLKFFSSISLFHRYYIRMNRIYHIFY 150
DE I + F+I + L F+SS ++R YI HIF+
Sbjct: 235 DERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTLRRHIFF 278
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,607,563
Number of Sequences: 369166
Number of extensions: 150092
Number of successful extensions: 294
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 68,354,980
effective HSP length: 63
effective length of database: 56,716,675
effective search space used: 1701500250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)