Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_B15
(626 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H9Q2|CSN7B_HUMAN COP9 signalosome complex subunit 7b (... 96 1e-19
sp|Q8BV13|CSN7B_MOUSE COP9 signalosome complex subunit 7b (... 95 1e-19
sp|Q9CZ04|CSN7A_MOUSE COP9 signalosome complex subunit 7a (... 89 7e-18
sp|Q9UBW8|CSN7A_HUMAN COP9 signalosome complex subunit 7a (... 87 5e-17
sp|Q9V4S8|CSN7_DROME COP9 signalosome complex subunit 7 (Si... 84 4e-16
sp|Q94JU3|CSN7_ARATH COP9 signalosome complex subunit 7 (CS... 83 7e-16
sp|Q94261|CSN7_CAEEL Probable COP9 signalosome complex subu... 40 0.006
sp|Q09722|CSN7B_SCHPO COP9 signalosome complex subunit 7B 36 0.092
sp|O95613|PCNT_HUMAN Pericentrin (Pericentrin B) (Kendrin) 36 0.092
sp|P03879|MBI4_YEAST Intron-encoded RNA maturase bI4 precur... 33 0.60
>sp|Q9H9Q2|CSN7B_HUMAN COP9 signalosome complex subunit 7b (Signalosome subunit 7b)
(SGN7b) (JAB1-containing signalosome subunit 7b)
Length = 264
Score = 95.5 bits (236), Expect = 1e-19
Identities = 46/154 (29%), Positives = 83/154 (53%)
Frame = +3
Query: 3 INLFCYGTYKEYIENQDCYPKLCDEQLRKLKQLTIITLSMTNGVLYYKIIYDAIDETCQR 182
+NLF YGTY +YI N++ P+L Q KLK LTI++L+ + Y ++ ++ R
Sbjct: 67 LNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLR 126
Query: 183 KIEELILDLIYYNILEGYFDQENECFQVESTSGRDFPIEQIDEMKSKLIEWAKKCDSVIE 362
++E+LI++ +Y +I++G DQ N+ +V+ GRD + I+ + L EW C++V+
Sbjct: 127 ELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLL 186
Query: 363 RLAHEFSAANNIKAQRRIEHQQASINLEKAREEI 464
+ + AN K QQ + ++ +
Sbjct: 187 GIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTL 220
>sp|Q8BV13|CSN7B_MOUSE COP9 signalosome complex subunit 7b (Signalosome subunit 7b)
(SGN7b) (JAB1-containing signalosome subunit 7b)
Length = 264
Score = 95.1 bits (235), Expect = 1e-19
Identities = 46/154 (29%), Positives = 83/154 (53%)
Frame = +3
Query: 3 INLFCYGTYKEYIENQDCYPKLCDEQLRKLKQLTIITLSMTNGVLYYKIIYDAIDETCQR 182
+NLF YGTY +YI N++ P+L Q KLK LTI++L+ + Y ++ ++ R
Sbjct: 67 LNLFAYGTYPDYIANKESLPELSVAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLR 126
Query: 183 KIEELILDLIYYNILEGYFDQENECFQVESTSGRDFPIEQIDEMKSKLIEWAKKCDSVIE 362
++E+LI++ +Y +I++G DQ N+ +V+ GRD + I+ + L EW C++V+
Sbjct: 127 ELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLL 186
Query: 363 RLAHEFSAANNIKAQRRIEHQQASINLEKAREEI 464
+ + AN K QQ + ++ +
Sbjct: 187 GIEQQVLRANQYKENHHRTQQQVEAEVSNIKKTL 220
>sp|Q9CZ04|CSN7A_MOUSE COP9 signalosome complex subunit 7a (Signalosome subunit 7a)
(SGN7a) (JAB1-containing signalosome subunit 7a)
Length = 275
Score = 89.4 bits (220), Expect = 7e-18
Identities = 48/185 (25%), Positives = 94/185 (50%), Gaps = 3/185 (1%)
Frame = +3
Query: 3 INLFCYGTYKEYIENQDCYPKLCDEQLRKLKQLTIITLSMTNGVLYYKIIYDAIDETCQR 182
+ +F YGTY +Y+ P L D Q KL+ L+++TL+ + Y ++ +A+ R
Sbjct: 67 LTVFAYGTYADYLAEARNLPPLTDAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVR 126
Query: 183 KIEELILDLIYYNILEGYFDQENECFQVESTSGRDFPIEQIDEMKSKLIEWAKKCDSVIE 362
++E+L+++ +Y ++L G DQ N+ +V+ + GRD + + + L EW C+ V+
Sbjct: 127 QLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIAQTLQEWCVGCEVVLS 186
Query: 363 RLAHEFSAANNIKAQRRIEHQQAS---INLEKAREEISQVIRKETSGQSFDNVTPIKDSS 533
+ + S AN K Q+ QQ NL+K + + TS ++T +++ +
Sbjct: 187 GIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLTELREPA 246
Query: 534 AACQE 548
+ +
Sbjct: 247 SGTNQ 251
>sp|Q9UBW8|CSN7A_HUMAN COP9 signalosome complex subunit 7a (Signalosome subunit 7a)
(SGN7a) (JAB1-containing signalosome subunit 7a) (Dermal
papilla derived protein 10)
sp|Q5R762|CSN7A_PONPY COP9 signalosome complex subunit 7a (Signalosome subunit 7a)
(SGN7a) (JAB1-containing signalosome subunit 7a)
Length = 275
Score = 86.7 bits (213), Expect = 5e-17
Identities = 47/178 (26%), Positives = 91/178 (51%), Gaps = 3/178 (1%)
Frame = +3
Query: 3 INLFCYGTYKEYIENQDCYPKLCDEQLRKLKQLTIITLSMTNGVLYYKIIYDAIDETCQR 182
+ +F YGTY +Y+ P L + Q KL+ L+++TL+ + Y ++ +A+ R
Sbjct: 67 LTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVR 126
Query: 183 KIEELILDLIYYNILEGYFDQENECFQVESTSGRDFPIEQIDEMKSKLIEWAKKCDSVIE 362
++E+L+++ +Y ++L G DQ N+ +V+ + GRD + + + L EW C+ V+
Sbjct: 127 QLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLS 186
Query: 363 RLAHEFSAANNIKAQRRIEHQQAS---INLEKAREEISQVIRKETSGQSFDNVTPIKD 527
+ + S AN K Q+ QQ NL+K + + TS ++T +++
Sbjct: 187 GIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLTELRE 244
>sp|Q9V4S8|CSN7_DROME COP9 signalosome complex subunit 7 (Signalosome subunit 7) (Dch7)
Length = 278
Score = 83.6 bits (205), Expect = 4e-16
Identities = 46/163 (28%), Positives = 85/163 (52%)
Frame = +3
Query: 3 INLFCYGTYKEYIENQDCYPKLCDEQLRKLKQLTIITLSMTNGVLYYKIIYDAIDETCQR 182
+NLF YGTYKEY + + +L +KL+ LTI++L++ + Y ++ ++ R
Sbjct: 75 LNLFAYGTYKEYRAQPEKFIELTPAMQKKLQHLTIVSLAIKAKSIPYALLLSELEIDNVR 134
Query: 183 KIEELILDLIYYNILEGYFDQENECFQVESTSGRDFPIEQIDEMKSKLIEWAKKCDSVIE 362
+E++I++ IY +I+ G Q +V+ GRD P ++ L W CDSV
Sbjct: 135 HLEDIIIEAIYADIIHGKLFQNTRILEVDYAQGRDIPPGYTGQIVETLQAWVNSCDSVSN 194
Query: 363 RLAHEFSAANNIKAQRRIEHQQASINLEKAREEISQVIRKETS 491
+ + AN K++R I ++ +E+ + +V++ +TS
Sbjct: 195 CIEMQIKYANAEKSKRLINKER----VEQDLINLKKVLKSQTS 233
>sp|Q94JU3|CSN7_ARATH COP9 signalosome complex subunit 7 (CSN complex subunit 7) (FUSCA
protein 5) (FUSCA5)
Length = 260
Score = 82.8 bits (203), Expect = 7e-16
Identities = 46/156 (29%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Frame = +3
Query: 3 INLFCYGTYKEYIENQDCYPKLCDEQLRKLKQLTIITLSMTNGVLYYKIIYDAIDETCQR 182
+ LF +GT+ +Y N P L +Q+ KLKQLT++TL+ +N VL Y + +D + R
Sbjct: 66 LRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVR 125
Query: 183 KIEE-LILDLIYYNILEGYFDQENECFQVESTSGRDFPIEQIDEMKSKLIEWAKKCDSVI 359
++E+ LI + +Y I+ G DQ CF+V +GRD Q+ M L W ++++
Sbjct: 126 ELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWLNTSENLL 185
Query: 360 ERLAHEFSAANNIKAQRRIEHQQASINLEKAREEIS 467
+ + A+N+ + ++A +E+ ++ +S
Sbjct: 186 ISIQDKIKWADNMSEMDKKHRKEAEEGVEEVKKSLS 221
>sp|Q94261|CSN7_CAEEL Probable COP9 signalosome complex subunit 7 (Signalosome subunit 7)
Length = 390
Score = 39.7 bits (91), Expect = 0.006
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Frame = +3
Query: 3 INLFCYGTYKEYIENQDCYPKLCDEQ--------LRKLKQLTIITLSMTNGVLYYKIIYD 158
+ LF GT K+Y E PK E L+K++ LT+++L+ + +
Sbjct: 251 LELFISGTLKDYKEFVAKNPKFVTEHLKVDETILLKKIRLLTLMSLAEEKNEISLDELAK 310
Query: 159 AIDETCQRKIEELILDLIYYNILEGYFDQENECFQVESTSGRDFPIEQ 302
+D +EE ++D I N + G ++ V S R F EQ
Sbjct: 311 QLDILADETLEEFVIDAIQVNAISGKINEMARTLIVSSYQHRRFGTEQ 358
>sp|Q09722|CSN7B_SCHPO COP9 signalosome complex subunit 7B
Length = 402
Score = 35.8 bits (81), Expect = 0.092
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Frame = +3
Query: 72 DEQLRKLKQLTIITLSMT--NGVLYYKIIYDAIDETCQRKIEELILDLIYYNILEGYFDQ 245
D RK+K LTI +L+ N L Y + ++ + + ++E I+D+I ++EG Q
Sbjct: 277 DAIARKMKLLTIASLATQAPNNTLSYGDVAKSL-KIDENEVELWIIDVIRAGLVEGRMSQ 335
Query: 246 ENECFQVESTSGRDFPIEQIDEMKSKLIEWAKKCD---SVIERLAHEFSAANNIKAQR 410
+ + +S R F + + KL +W V+E+ F+ A++ K R
Sbjct: 336 LTKTLSIHRSSYRVFGKHEWVALHEKLAKWGSSLRYMLQVMEQPLSSFTIASSKKGNR 393
>sp|O95613|PCNT_HUMAN Pericentrin (Pericentrin B) (Kendrin)
Length = 3336
Score = 35.8 bits (81), Expect = 0.092
Identities = 30/143 (20%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Frame = +3
Query: 48 QDCYPKLCDEQLRKLKQLTIITLSMTNGVLYYKIIYDAIDETCQRKIEELILDLIYYNIL 227
+D LC+ + +K +QL+ + VL + + + + + ++EL + L
Sbjct: 2607 RDLKSDLCESR-QKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRAL 2665
Query: 228 EGYFDQEN-ECFQVESTSGRDFPIEQIDEMKSKLIEWAKKCDSVIERLAHEFSAANNIKA 404
+ ++E Q ES S + ++E+++ L + + L HE +A +N++
Sbjct: 2666 QSQLEEEQLRHLQRESQSAK-----ALEELRASLETQRAQSSRLCVALKHEQTAKDNLQK 2720
Query: 405 QRRIEHQQASINLEKAREEISQV 473
+ RIEH + L + R ++S++
Sbjct: 2721 ELRIEHSRCEALLAQERSQLSEL 2743
>sp|P03879|MBI4_YEAST Intron-encoded RNA maturase bI4 precursor (RNA maturase SCbI4)
[Contains: Truncated, nonfunctional cytochrome b; RNA
maturase bI4 ]
Length = 638
Score = 33.1 bits (74), Expect = 0.60
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 282 YRWSIQLESIHSLDQNILRECYSKSNLKSILLFFVDKFH 166
++WSI + +H++ + C SKSN K LF +DKF+
Sbjct: 571 FKWSINNKELHNIFYTYNKSCPSKSN-KGKRLFLIDKFY 608
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,534,251
Number of Sequences: 369166
Number of extensions: 1182647
Number of successful extensions: 4681
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4676
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)