Planarian EST Database


Dr_sW_015_B04

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_015_B04
         (813 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5ZKX1|CHM1B_CHICK  Charged multivesicular body protein 1...   249   8e-66
sp|Q7SZB5|CHM1B_XENLA  Charged multivesicular body protein 1...   247   2e-65
sp|Q6DF27|CHM1B_XENTR  Charged multivesicular body protein 1...   246   4e-65
sp|Q7LBR1|CHM1B_HUMAN  Charged multivesicular body protein 1...   244   2e-64
sp|Q9CQD4|CH1B2_MOUSE  Charged multivesicular body protein 1...   244   2e-64
sp|Q99LU0|CH1B1_MOUSE  Charged multivesicular body protein 1...   243   6e-64
sp|Q5E994|CHM1B_BOVIN  Charged multivesicular body protein 1...   241   2e-63
sp|Q7ZVB1|CHM1B_BRARE  Charged multivesicular body protein 1...   240   3e-63
sp|Q6PHF0|CHM1A_BRARE  Charged multivesicular body protein 1...   178   1e-44
sp|Q921W0|CHM1A_MOUSE  Charged multivesicular body protein 1...   174   3e-43
>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b (Chromatin modifying protein
           1b) (CHMP1b)
          Length = 199

 Score =  249 bits (635), Expect = 8e-66
 Identities = 131/195 (67%), Positives = 158/195 (81%)
 Frame = +2

Query: 29  MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 208
           M+KHLFNLKFAAK+L RN+                AIQKGNME A+IHAENAIRQKNQA+
Sbjct: 4   MEKHLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAI 63

Query: 209 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 388
           N+ RMS+R+DAVAARVQTAVTM  VT SMAGVVKSM++ +KSMNLEK+S LMD+FE  FE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123

Query: 389 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 568
            LDVQ+Q ME+TM NTTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ+ +VG  +S A
Sbjct: 124 TLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--TSVA 181

Query: 569 AQEQDELTQRLAKLR 613
           + EQDEL+QRLA+LR
Sbjct: 182 SAEQDELSQRLARLR 196
>sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1b (Chromatin modifying protein
           1b) (CHMP1b)
          Length = 199

 Score =  247 bits (631), Expect = 2e-65
 Identities = 130/195 (66%), Positives = 157/195 (80%)
 Frame = +2

Query: 29  MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 208
           M+KHLFNLKFAAK+L RNA                AIQKGN E A+IHAENAIRQKNQ +
Sbjct: 4   MEKHLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGI 63

Query: 209 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 388
           N+ RMS+R+DAVAARVQTAVTM  VT SMAGVVKSM++ +KSMNLEK+S LMD+FE  FE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123

Query: 389 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 568
            LDVQ+Q ME TM NTTTLTTPQNQV++L+HE+ADEAG++L+M+LP GQ+ +VG  +S A
Sbjct: 124 TLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLSMELPQGQTGSVG--TSVA 181

Query: 569 AQEQDELTQRLAKLR 613
           + EQDEL+QRLA+LR
Sbjct: 182 STEQDELSQRLARLR 196
>sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1b (Chromatin modifying protein
           1b) (CHMP1b)
          Length = 199

 Score =  246 bits (629), Expect = 4e-65
 Identities = 130/195 (66%), Positives = 157/195 (80%)
 Frame = +2

Query: 29  MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 208
           M+K+LFNLKFAAK+L RNA                AIQKGN E A+IHAENAIRQKNQ +
Sbjct: 4   MEKNLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGI 63

Query: 209 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 388
           N+ RMS+R+DAVAARVQTAVTM  VT SMAGVVKSM++ +KSMNLEK+S LMD+FE  FE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFE 123

Query: 389 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 568
            LDVQ+Q ME TM NTTTLTTPQNQV++L+HE+ADEAG++LNM+LP GQ+ +VG  +S A
Sbjct: 124 TLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVG--TSVA 181

Query: 569 AQEQDELTQRLAKLR 613
           + EQDEL+QRLA+LR
Sbjct: 182 STEQDELSQRLARLR 196
>sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1b (Chromatin modifying protein
           1b) (CHMP1b) (CHMP1.5) (Vacuolar protein sorting 46-2)
           (Vps46-2) (hVps46-2)
          Length = 199

 Score =  244 bits (623), Expect = 2e-64
 Identities = 129/195 (66%), Positives = 157/195 (80%)
 Frame = +2

Query: 29  MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 208
           M+KHLFNLKFAAK+L R+A                AIQKGNME A+IHAENAIRQKNQA+
Sbjct: 4   MEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63

Query: 209 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 388
           N+ RMS+R+DAVAARVQTAVTM  VT SMAGVVKSM++ +K+MNLEK+S LMD+FE  FE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123

Query: 389 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 568
            LDVQ+Q ME TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ+ +VG  +S A
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--TSVA 181

Query: 569 AQEQDELTQRLAKLR 613
           + EQDEL+QRLA+LR
Sbjct: 182 SAEQDELSQRLARLR 196
>sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1b-2 (Chromatin modifying
           protein 1b-2) (CHMP1b-2)
          Length = 199

 Score =  244 bits (623), Expect = 2e-64
 Identities = 129/195 (66%), Positives = 156/195 (80%)
 Frame = +2

Query: 29  MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 208
           M+KHLFNLKFAAK+L RNA                AIQKGN E A+IHAENAIRQKNQA+
Sbjct: 4   MEKHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAI 63

Query: 209 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 388
           N+ RMS+R+DAVAARVQTAVTM  VT SMAGVVKSM++ ++SMNLEK+S LMD+FE  FE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFE 123

Query: 389 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 568
            LDVQ+Q ME TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ+ +VG  +S A
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--ASVA 181

Query: 569 AQEQDELTQRLAKLR 613
           + EQDEL+QRLA+LR
Sbjct: 182 STEQDELSQRLARLR 196
>sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1b-1 (Chromatin modifying
           protein 1b-1) (CHMP1b-1)
          Length = 199

 Score =  243 bits (619), Expect = 6e-64
 Identities = 128/195 (65%), Positives = 156/195 (80%)
 Frame = +2

Query: 29  MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 208
           M+KHLFNLKFAAK+L R++                AIQKGNME A+IHAENAIRQKNQ +
Sbjct: 4   MEKHLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGV 63

Query: 209 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 388
           N+ RMS+R+DAVAARVQTAVTM  VT SMAGVVKSM++ +KSMNLEK+S LMD+FE  FE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123

Query: 389 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 568
            LDVQ+Q ME TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+LP GQ+ +VG  +S A
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG--TSVA 181

Query: 569 AQEQDELTQRLAKLR 613
           + EQDEL+QRLA+LR
Sbjct: 182 SAEQDELSQRLARLR 196
>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b (Chromatin modifying protein
           1b) (CHMP1b)
          Length = 199

 Score =  241 bits (615), Expect = 2e-63
 Identities = 128/195 (65%), Positives = 156/195 (80%)
 Frame = +2

Query: 29  MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 208
           M+KHLFNLKFAAK+L R+A                AIQKGNME A+IHAENAIRQKNQA+
Sbjct: 4   MEKHLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63

Query: 209 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 388
           N+ RMS+R+DAVAARVQTAVTM  VT SMAGVVKSM++ +K+MNLEK+S LMD+FE  FE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123

Query: 389 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 568
            LDVQ+Q ME TM +TTTLTTPQ QV+ L+ E+ADEAG++LNM+LP GQ+ +VG  +S A
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVG--TSVA 181

Query: 569 AQEQDELTQRLAKLR 613
           + EQDEL+QRLA+LR
Sbjct: 182 SAEQDELSQRLARLR 196
>sp|Q7ZVB1|CHM1B_BRARE Charged multivesicular body protein 1b (Chromatin modifying protein
           1b) (CHMP1b)
          Length = 199

 Score =  240 bits (613), Expect = 3e-63
 Identities = 126/195 (64%), Positives = 157/195 (80%)
 Frame = +2

Query: 29  MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 208
           M+KHLFNLKFAAK+L+RN+                AIQKGNME A+IHAENAIRQKNQ++
Sbjct: 4   MEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSV 63

Query: 209 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 388
           N+ RMS+R+DAVAARVQTAVTM  VT SMAGVVK M++ +KSMNLEK+S LM++FE+ FE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFE 123

Query: 389 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQLPAGQSTAVGGASSQA 568
            LDVQ+  ME +M +TTTLTTPQ QV++LM E+ADEAG++LNM+LP GQ+ +VG  +S A
Sbjct: 124 TLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVG--TSVA 181

Query: 569 AQEQDELTQRLAKLR 613
           + EQDEL+QRLAKLR
Sbjct: 182 SAEQDELSQRLAKLR 196
>sp|Q6PHF0|CHM1A_BRARE Charged multivesicular body protein 1a (Chromatin modifying protein
           1a) (CHMP1a)
          Length = 198

 Score =  178 bits (452), Expect = 1e-44
 Identities = 95/198 (47%), Positives = 141/198 (71%), Gaps = 3/198 (1%)
 Frame = +2

Query: 29  MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 208
           MD  LF LKF +K LER A                A+Q+ N+E A+++AENAIR+KN+ L
Sbjct: 1   MDDTLFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGL 60

Query: 209 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 388
           N+ RM+SR+DAVA++VQTA+TMK V  +M  V K+++ A+ SM+L+KVS +MD+FE   +
Sbjct: 61  NWLRMASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQ 120

Query: 389 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELN---MQLPAGQSTAVGGAS 559
           NLDV + VME +M + TTL+TPQ QV+ L+ ++A+E+G+E+     QLPAG S A+G  S
Sbjct: 121 NLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGAS-ALGETS 179

Query: 560 SQAAQEQDELTQRLAKLR 613
           ++A +++D+L++RLA LR
Sbjct: 180 ARAQEKEDQLSRRLAALR 197
>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a (Chromatin modifying protein
           1a) (CHMP1a)
          Length = 196

 Score =  174 bits (441), Expect = 3e-43
 Identities = 97/198 (48%), Positives = 139/198 (70%), Gaps = 3/198 (1%)
 Frame = +2

Query: 29  MDKHLFNLKFAAKDLERNAXXXXXXXXXXXXXXXLAIQKGNMEGAQIHAENAIRQKNQAL 208
           MD  LF LKF AK LE+ A                A+Q+ N+E A+++AENAIR+KN+ +
Sbjct: 1   MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGV 60

Query: 209 NYRRMSSRIDAVAARVQTAVTMKAVTGSMAGVVKSMESAMKSMNLEKVSQLMDRFEKDFE 388
           N+ RM+SR+DAVA++VQTAVTMK VT +MA V K+++ A+ +M+L+KVS +MDRFE+  +
Sbjct: 61  NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQ 120

Query: 389 NLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIEL---NMQLPAGQSTAVGGAS 559
           NLDV + VME ++ + TTLTTPQ QV+SL+ ++A+E G+E+     QLP G S AVG   
Sbjct: 121 NLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLPEGAS-AVG--E 177

Query: 560 SQAAQEQDELTQRLAKLR 613
           S    ++D+L++RLA LR
Sbjct: 178 SSVRSQEDQLSRRLAALR 195
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,590,638
Number of Sequences: 369166
Number of extensions: 1111070
Number of successful extensions: 3202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3172
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)