Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_B03
(383 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18079|HEM1_RHOCA 5-aminolevulinate synthase (5-aminolev... 31 0.76
sp|Q9HM89|EF1A_HALSA Elongation factor 1-alpha (EF-1-alpha)... 29 2.9
sp|P62455|HIS7_PHOPR Histidine biosynthesis bifunctional pr... 28 5.0
sp|P22807|SLOU_DROME Homeobox protein slou (S59/2) (Slouch ... 28 6.5
sp|Q45894|BXA2_CLOBO Botulinum neurotoxin type A precursor ... 28 8.5
sp|P02441|KRA3_SHEEP Keratin, high-sulfur matrix protein, I... 28 8.5
sp|P02443|KRA3A_SHEEP Keratin, high-sulfur matrix protein, ... 28 8.5
sp|P02442|KRA3_CAPHI Keratin, high-sulfur matrix protein, I... 28 8.5
>sp|P18079|HEM1_RHOCA 5-aminolevulinate synthase (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
Length = 401
Score = 31.2 bits (69), Expect = 0.76
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 110 ELQQPHRICIQVQCRILQIPIICHHSHIFPVFHIHNIHT 226
+ QQ H ++++ + L +PII H SHI PV +HT
Sbjct: 305 DAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHT 343
>sp|Q9HM89|EF1A_HALSA Elongation factor 1-alpha (EF-1-alpha) (Elongation factor Tu)
(EF-Tu)
Length = 421
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 256 GIDQVALVVVGMDIVDMEHREYMAVVAYYRDL 161
GID++ + V MD+VD + +Y VV+ +DL
Sbjct: 136 GIDELIVAVNKMDVVDYDESKYNEVVSGVKDL 167
>sp|P62455|HIS7_PHOPR Histidine biosynthesis bifunctional protein hisB [Includes:
Histidinol-phosphatase ; Imidazoleglycerol-phosphate
dehydratase (IGPD)]
Length = 361
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -2
Query: 328 FNEDNIDYNQDKCYIQVDSYILQEGIDQVALVVVGMDIVDMEHREYMAV 182
FNEDN + K + V SY+ Q +D V+G D++ E MA+
Sbjct: 97 FNEDNCSCRKPKLGL-VKSYLQQGRVDFATSAVIGDRQTDLQLAENMAI 144
>sp|P22807|SLOU_DROME Homeobox protein slou (S59/2) (Slouch protein) (Homeobox protein
NK-1)
Length = 659
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Frame = +2
Query: 113 LQQPHRICIQVQCRILQIPIIC--------HHSHIFPVFHIHNIHTHNHQ 238
LQ PH +Q +LQ P HH H H H H H+HQ
Sbjct: 174 LQHPHAALLQQHPHLLQNPQFLAAAQQHMHHHQH---QHHQHPAHPHSHQ 220
>sp|Q45894|BXA2_CLOBO Botulinum neurotoxin type A precursor (BoNT/A) (Bontoxilysin A)
(BOTOX) [Contains: Botulinum neurotoxin A light-chain;
Botulinum neurotoxin A heavy-chain]
Length = 1296
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Frame = -2
Query: 373 TNNRYLFRSKYEVCEF--------NEDNIDYNQDKCYIQV 278
T N YL + YE +F NEDNI N D+ YI V
Sbjct: 1145 TTNIYLNSTLYEGTKFIIKKYASGNEDNIVRNNDRVYINV 1184
>sp|P02441|KRA3_SHEEP Keratin, high-sulfur matrix protein, IIIA3
Length = 131
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 120 CCSSNCWLYSTRHLLWLSTCSRIVSLVC 37
CC ++C R W +TC + VS+ C
Sbjct: 77 CCPTSCQAVVCRPCCWATTCCQPVSVQC 104
>sp|P02443|KRA3A_SHEEP Keratin, high-sulfur matrix protein, IIIA3A
Length = 130
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 120 CCSSNCWLYSTRHLLWLSTCSRIVSLVC 37
CC ++C R W +TC + VS+ C
Sbjct: 78 CCPTSCQAVVCRPCCWATTCCQPVSVQC 105
>sp|P02442|KRA3_CAPHI Keratin, high-sulfur matrix protein, IIIA3 (M2.6 protein)
Length = 132
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 120 CCSSNCWLYSTRHLLWLSTCSRIVSLVC 37
CC ++C R W +TC + VS+ C
Sbjct: 78 CCPTSCQAVVCRPCCWATTCCQPVSVQC 105
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,460,425
Number of Sequences: 369166
Number of extensions: 441227
Number of successful extensions: 1691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1688
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)