Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_B02
(213 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34455|ACON_CAEEL Probable aconitate hydratase, mitochon... 52 6e-07
sp|Q99798|ACON_HUMAN Aconitate hydratase, mitochondrial pre... 49 5e-06
sp|P16276|ACON_PIG Aconitate hydratase, mitochondrial precu... 49 5e-06
sp|Q99KI0|ACON_MOUSE Aconitate hydratase, mitochondrial pre... 49 5e-06
sp|Q9ER34|ACON_RAT Aconitate hydratase, mitochondrial precu... 49 5e-06
sp|P20004|ACON_BOVIN Aconitate hydratase, mitochondrial pre... 49 5e-06
sp|O13966|ACON_SCHPO Aconitate hydratase, mitochondrial pre... 46 3e-05
sp|P49609|ACON_GRAVE Aconitate hydratase, mitochondrial pre... 42 3e-04
sp|P19414|ACON_YEAST Aconitate hydratase, mitochondrial pre... 39 0.005
sp|P39533|ACON2_YEAST Putative aconitase in PRP21-UBP12 int... 33 0.16
>sp|P34455|ACON_CAEEL Probable aconitate hydratase, mitochondrial precursor (Citrate
hydro-lyase) (Aconitase)
Length = 777
Score = 51.6 bits (122), Expect = 6e-07
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = +3
Query: 6 ITLNHTFNKNQIDWFKAGSALNRMRE 83
+TLNHTFN+ QI+WFKAGSALNRM+E
Sbjct: 746 VTLNHTFNEQQIEWFKAGSALNRMKE 771
>sp|Q99798|ACON_HUMAN Aconitate hydratase, mitochondrial precursor (Citrate hydro-lyase)
(Aconitase)
Length = 780
Score = 48.5 bits (114), Expect = 5e-06
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +3
Query: 6 ITLNHTFNKNQIDWFKAGSALNRMRE 83
I LNHTFN+ QI+WF+AGSALNRM+E
Sbjct: 752 ILLNHTFNETQIEWFRAGSALNRMKE 777
>sp|P16276|ACON_PIG Aconitate hydratase, mitochondrial precursor (Citrate hydro-lyase)
(Aconitase)
Length = 781
Score = 48.5 bits (114), Expect = 5e-06
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +3
Query: 6 ITLNHTFNKNQIDWFKAGSALNRMRE 83
I LNHTFN+ QI+WF+AGSALNRM+E
Sbjct: 752 ILLNHTFNETQIEWFRAGSALNRMKE 777
>sp|Q99KI0|ACON_MOUSE Aconitate hydratase, mitochondrial precursor (Citrate hydro-lyase)
(Aconitase)
Length = 780
Score = 48.5 bits (114), Expect = 5e-06
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +3
Query: 6 ITLNHTFNKNQIDWFKAGSALNRMRE 83
I LNHTFN+ QI+WF+AGSALNRM+E
Sbjct: 752 ILLNHTFNETQIEWFRAGSALNRMKE 777
>sp|Q9ER34|ACON_RAT Aconitate hydratase, mitochondrial precursor (Citrate hydro-lyase)
(Aconitase)
Length = 780
Score = 48.5 bits (114), Expect = 5e-06
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +3
Query: 6 ITLNHTFNKNQIDWFKAGSALNRMRE 83
I LNHTFN+ QI+WF+AGSALNRM+E
Sbjct: 752 ILLNHTFNETQIEWFRAGSALNRMKE 777
>sp|P20004|ACON_BOVIN Aconitate hydratase, mitochondrial precursor (Citrate hydro-lyase)
(Aconitase)
Length = 780
Score = 48.5 bits (114), Expect = 5e-06
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +3
Query: 6 ITLNHTFNKNQIDWFKAGSALNRMRE 83
I LNHTFN+ QI+WF+AGSALNRM+E
Sbjct: 752 ILLNHTFNETQIEWFRAGSALNRMKE 777
>sp|O13966|ACON_SCHPO Aconitate hydratase, mitochondrial precursor (Citrate hydro-lyase)
(Aconitase)
Length = 778
Score = 45.8 bits (107), Expect = 3e-05
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3
Query: 12 LNHTFNKNQIDWFKAGSALNRM 77
LNHTFNK+QI+WFKAGSALN M
Sbjct: 750 LNHTFNKDQIEWFKAGSALNHM 771
>sp|P49609|ACON_GRAVE Aconitate hydratase, mitochondrial precursor (Citrate hydro-lyase)
(Aconitase)
Length = 779
Score = 42.4 bits (98), Expect = 3e-04
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +3
Query: 6 ITLNHTFNKNQIDWFKAGSALNRMR 80
I LNHTFN Q++WF+AGSALN+++
Sbjct: 750 ILLNHTFNDEQLEWFRAGSALNKIK 774
>sp|P19414|ACON_YEAST Aconitate hydratase, mitochondrial precursor (Citrate hydro-lyase)
(Aconitase)
Length = 778
Score = 38.5 bits (88), Expect = 0.005
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 12 LNHTFNKNQIDWFKAGSALNRMR 80
L HTFN QI+WFK GSALN+++
Sbjct: 751 LTHTFNDEQIEWFKYGSALNKIK 773
>sp|P39533|ACON2_YEAST Putative aconitase in PRP21-UBP12 intergenic region
Length = 789
Score = 33.5 bits (75), Expect = 0.16
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 6 ITLNHTFNKNQIDWFKAGSALN 71
I HT +K+QID+FKAGSA+N
Sbjct: 759 IKAKHTMSKDQIDFFKAGSAIN 780
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,558,987
Number of Sequences: 369166
Number of extensions: 199327
Number of successful extensions: 576
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 68,354,980
effective HSP length: 42
effective length of database: 60,596,110
effective search space used: 1696691080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)