Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_B01
(667 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 (RanBP9) (RanBP... 43 8e-04
sp|P69566|RANB9_MOUSE Ran binding protein 9 (RanBP9) (Ran-b... 43 8e-04
sp|O59905|PDX1_CERNC Pyridoxine biosynthesis protein PDX1 (... 34 0.39
sp|Q7UZP7|THIC_PROMP Thiamine biosynthesis protein thiC 33 0.51
sp|O69198|ILVD_STRCO Dihydroxy-acid dehydratase (DAD) 33 0.88
sp|P82885|THAI_NAJKA Thaicobrin 33 0.88
sp|O15344|TRI18_HUMAN Midline-1 (Tripartite motif protein 1... 32 1.5
sp|P82458|TRI18_RAT Midline-1 (Tripartite motif protein 18) 32 1.5
sp|P82457|TRI18_MUSSP Midline-1 (Tripartite motif protein 18) 32 1.5
sp|Q9UJV3|TRIM1_HUMAN Midline-2 (Midline defect 2) (Tripart... 32 2.0
>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 (RanBP9) (RanBP7) (Ran-binding protein M)
(RanBPM) (BPM90) (BPM-L)
Length = 729
Score = 42.7 bits (99), Expect = 8e-04
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Frame = +2
Query: 203 YFEVKIQSSGT---WGIGLATPKVNLDKVPLGTDKESWVLKDNSTVWHNNEQISKLDNLM 373
YFEVKI S G GIGL+ VN++++P G DK S+ + + +
Sbjct: 216 YFEVKIVSKGRDGYMGIGLSAQGVNMNRLP-GWDKHSYGYHGDDGHSFCSSGTGQPYGPT 274
Query: 374 VQEGDVIGISYDHV-EMCIWV-NGKHAGLSVRGMRGSLYPTVYVD-DGAILDVEF 529
GDVIG + + C + NG G++ + +LYPTV + G ++D F
Sbjct: 275 FTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANF 329
>sp|P69566|RANB9_MOUSE Ran binding protein 9 (RanBP9) (Ran-binding protein M) (RanBPM) (B
cell antigen receptor Ig beta associated protein 1)
(IBAP-1)
Length = 653
Score = 42.7 bits (99), Expect = 8e-04
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Frame = +2
Query: 203 YFEVKIQSSGT---WGIGLATPKVNLDKVPLGTDKESWVLKDNSTVWHNNEQISKLDNLM 373
YFEVKI S G GIGL+ VN++++P G DK S+ + + +
Sbjct: 141 YFEVKIVSKGRDGYMGIGLSAQGVNMNRLP-GWDKHSYGYHGDDGHSFCSSGTGQPYGPT 199
Query: 374 VQEGDVIGISYDHV-EMCIWV-NGKHAGLSVRGMRGSLYPTVYVD-DGAILDVEF 529
GDVIG + + C + NG G++ + +LYPTV + G ++D F
Sbjct: 200 FTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANF 254
>sp|O59905|PDX1_CERNC Pyridoxine biosynthesis protein PDX1 (Singlet oxygen resistance
protein 1)
Length = 343
Score = 33.9 bits (76), Expect = 0.39
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = +2
Query: 11 CSYILCRRNDQFNPVPLNDIDANSEQVKLDTS---SMGQQAVVVKNGKRICGSGAALANC 181
C Y L ++ Q +P+ + A D + MG V V +G G A A
Sbjct: 240 CDYNLLKQTAQLKRLPVVNFAAGGIATPADAALMMQMGCDGVFVGSGIFKSGDAAKRAKA 299
Query: 182 HINQNKAYFEVKIQSSGTWGIGLATPKVNLDKVP 283
+ Y + K+ + + G+G A +N DK+P
Sbjct: 300 IVQATTHYNDPKVLAEVSSGLGEAMVGINCDKLP 333
>sp|Q7UZP7|THIC_PROMP Thiamine biosynthesis protein thiC
Length = 456
Score = 33.5 bits (75), Expect = 0.51
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 4/167 (2%)
Frame = +2
Query: 68 IDANSEQVKLDTSSMGQQAVVVKNGKRICGSGAALANCHINQNKAYFEVKIQSSGTWGIG 247
I AN V L+ ++G + K GA+ IN+ ++ ++ +
Sbjct: 55 IPANVNHVNLEPMAIG----IASKCKVNANIGASPNASDINEEVEKLKLAVKYGADTVMD 110
Query: 248 LATPKVNLDKVPLGTDKESWVLKDNSTVWHNNEQI-SKLDNLMVQEGDVIGISYDHVEMC 424
L+T VNLD+V KES V V+ E ++ L E D + I H +
Sbjct: 111 LSTGGVNLDEVRQAIIKESSVPIGTVPVYQALESAHGSIERL--TEDDFLHIIEKHCQQG 168
Query: 425 IWVNGKHAGLSVRGM---RGSLYPTVYVDDGAILDVEFSHFRHDPPY 556
+ HAGL + + +G + V G + HF+ +P Y
Sbjct: 169 VDYQTIHAGLLIEHLPKVKGRITGIVSRGGGILAQWMLHHFKQNPLY 215
>sp|O69198|ILVD_STRCO Dihydroxy-acid dehydratase (DAD)
Length = 617
Score = 32.7 bits (73), Expect = 0.88
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 287 GTDKESWVLKDNSTVWHNNEQ-ISKLDNLMVQEGDVIGISYDHVEMCIWVNGKHAGLSVR 463
G D+ W + + V + E+ + K+ V+EGDV+ I Y+ G G
Sbjct: 446 GVDESIWTFEGPAVVCESQEEAVQKILTQQVKEGDVVVIRYE---------GPKGG---P 493
Query: 464 GMRGSLYPTVYV 499
GM+ LYPT Y+
Sbjct: 494 GMQEMLYPTSYL 505
>sp|P82885|THAI_NAJKA Thaicobrin
Length = 108
Score = 32.7 bits (73), Expect = 0.88
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +2
Query: 92 KLDTSSMGQQAVVVKNGKRICGSGAALANCHINQNKAYFEVKIQSSGTWGIGLATPKV 265
K ++G V N +R GS L + K +FEVK + W +GLA V
Sbjct: 28 KKTVENVGVSQVAPDNPERFDGSPCVLGSPGFRSGKHFFEVKYGTQREWAVGLAGKSV 85
>sp|O15344|TRI18_HUMAN Midline-1 (Tripartite motif protein 18) (Putative transcription
factor XPRF) (Midin) (RING finger protein 59)
Length = 667
Score = 32.0 bits (71), Expect = 1.5
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +2
Query: 155 GSGAALANCHINQNKAYFEVKIQSSGTWGIGLA---TPKVNLDKVPLGTDKESWVL---K 316
GS N I+ + Y+EV I S + IGLA PK +G + SW L
Sbjct: 526 GSYGVAGNVFIDSGRHYWEVVISGSTWYAIGLAYKSAPKHEW----IGKNSASWALCRCN 581
Query: 317 DNSTVWHNNEQI 352
+N V HN+++I
Sbjct: 582 NNWVVRHNSKEI 593
>sp|P82458|TRI18_RAT Midline-1 (Tripartite motif protein 18)
Length = 667
Score = 32.0 bits (71), Expect = 1.5
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +2
Query: 155 GSGAALANCHINQNKAYFEVKIQSSGTWGIGLA---TPKVNLDKVPLGTDKESWVL---K 316
GS N I+ + Y+EV I S + IGLA PK +G + SW L
Sbjct: 526 GSYGVAGNVFIDSGRHYWEVVISGSTWYAIGLAYKSAPKHEW----IGKNSASWALCRCN 581
Query: 317 DNSTVWHNNEQI 352
+N V HN+++I
Sbjct: 582 NNWVVRHNSKEI 593
>sp|P82457|TRI18_MUSSP Midline-1 (Tripartite motif protein 18)
Length = 667
Score = 32.0 bits (71), Expect = 1.5
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +2
Query: 155 GSGAALANCHINQNKAYFEVKIQSSGTWGIGLA---TPKVNLDKVPLGTDKESWVL---K 316
GS N I+ + Y+EV I S + IGLA PK +G + SW L
Sbjct: 526 GSYGVAGNVFIDSGRHYWEVVISGSTWYAIGLAYKSAPKHEW----IGKNSASWALCRCN 581
Query: 317 DNSTVWHNNEQI 352
+N V HN+++I
Sbjct: 582 NNWVVRHNSKEI 593
>sp|Q9UJV3|TRIM1_HUMAN Midline-2 (Midline defect 2) (Tripartite motif protein 1) (Midin-2)
(RING finger protein 60)
Length = 715
Score = 31.6 bits (70), Expect = 2.0
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = +2
Query: 86 QVKLDTSSMGQQAVVVKNGKRICGSGA--ALANCHINQNKAYFEVKIQSSGTWGIGLATP 259
Q++ D SS+ + +R G+G A N I+ Y+EV + SS + IG+A
Sbjct: 535 QMEKDESSLKKS----HTPERFSGTGCYGAAGNIFIDSGCHYWEVVMGSSTWYAIGIAYK 590
Query: 260 KVNLDKVPLGTDKESWVL---KDNSTVWHNNEQI 352
++ +G + SWV N V HNN+++
Sbjct: 591 SAPKNEW-IGKNASSWVFSRCNSNFVVRHNNKEM 623
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,034,205
Number of Sequences: 369166
Number of extensions: 1571155
Number of successful extensions: 3841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3839
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)