Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_P20-2
(592 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17663|FRIH1_XENLA Ferritin heavy chain 1 64 4e-10
sp|P49948|FRIH2_XENLA Ferritin heavy chain 2 (XL2-17) 63 6e-10
sp|Q7SXA5|FRIL_XENLA Ferritin light chain, oocyte isoform (... 62 1e-09
sp|P49947|FRIM_SALSA Ferritin, middle subunit (Ferritin M) 62 1e-09
sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) ... 62 1e-09
sp|P42577|FRIS_LYMST Soma ferritin 61 2e-09
sp|P25915|FRIH_RABIT Ferritin heavy chain (Ferritin H subunit) 60 4e-09
sp|P08267|FRIH_CHICK Ferritin heavy chain (Ferritin H subunit) 60 5e-09
sp|P07229|FRI1_RANCA Ferritin, higher subunit (Ferritin H) 59 7e-09
sp|Q5R8J7|FRIH_PONPY Ferritin heavy chain (Ferritin H subunit) 59 9e-09
>sp|P17663|FRIH1_XENLA Ferritin heavy chain 1
Length = 176
Score = 63.5 bits (153), Expect = 4e-10
Identities = 34/98 (34%), Positives = 52/98 (53%)
Frame = -3
Query: 521 EGRYTEELIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLA 342
E + E+ +++Q RG +V D+K E E E Q L LEK V+Q L L KLA
Sbjct: 59 EREHAEKFLKYQNKRGGRVVLQDIKKPERDEWSNTLEAMQAALQLEKTVNQALLDLHKLA 118
Query: 341 CEKLDVDLTSFLKDRVILRQIKVIRKRASQLRNLRRSG 228
+K+D L FL+ + Q+K +++ + NL+R G
Sbjct: 119 SDKVDPQLCDFLESEYLEEQVKAMKELGDYITNLKRLG 156
>sp|P49948|FRIH2_XENLA Ferritin heavy chain 2 (XL2-17)
Length = 176
Score = 62.8 bits (151), Expect = 6e-10
Identities = 34/98 (34%), Positives = 52/98 (53%)
Frame = -3
Query: 521 EGRYTEELIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLA 342
E + E+ +++Q RG +V D+K E E E Q L LEK V+Q L L KLA
Sbjct: 59 EREHAEKFLKYQNKRGGRVVLQDIKKPERDEWGNTLEATQAALQLEKTVNQALLDLHKLA 118
Query: 341 CEKLDVDLTSFLKDRVILRQIKVIRKRASQLRNLRRSG 228
+K+D L FL+ + Q+K +++ + NL+R G
Sbjct: 119 SDKVDAHLCDFLESEYLEEQVKAMKQLGDYITNLKRLG 156
>sp|Q7SXA5|FRIL_XENLA Ferritin light chain, oocyte isoform (B-ferritin) (XeBF) (GV-LCH)
Length = 177
Score = 62.0 bits (149), Expect = 1e-09
Identities = 33/110 (30%), Positives = 57/110 (51%)
Frame = -3
Query: 563 LMSFGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLE 384
L F + F + + + + E+ ++FQ RG +V DVK + E + + LNLE
Sbjct: 47 LSKFSKFFRELSEKKRDHAEDFLKFQNKRGGRVVLQDVKKPDDDEWGNGTKAMEVALNLE 106
Query: 383 KDVHQNTLRLCKLACEKLDVDLTSFLKDRVILRQIKVIRKRASQLRNLRR 234
K ++Q L L K+A + D + +L+ + ++K+I+K L NLRR
Sbjct: 107 KSINQAVLDLHKIATDHTDPHMQDYLEHEFLEEEVKLIKKLGDHLTNLRR 156
>sp|P49947|FRIM_SALSA Ferritin, middle subunit (Ferritin M)
Length = 176
Score = 62.0 bits (149), Expect = 1e-09
Identities = 39/129 (30%), Positives = 63/129 (48%)
Frame = -3
Query: 563 LMSFGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLE 384
L F F+ + E + ++L+ FQ RG ++ D+K E E E Q L LE
Sbjct: 45 LPGFAHFFKENSEEEREHADKLLSFQNKRGGRILLQDIKKPERDEWGNGLEAMQCALQLE 104
Query: 383 KDVHQNTLRLCKLACEKLDVDLTSFLKDRVILRQIKVIRKRASQLRNLRRSGDDVTPFLT 204
K+V+Q L L K+A +K+D L FL+ + Q++ I+K + NL + D V +
Sbjct: 105 KNVNQALLDLHKIASDKVDPHLCDFLETHYLNEQVEAIKKLGDHITNLTKM-DAVKNKMA 163
Query: 203 SSLHARHEI 177
L +H +
Sbjct: 164 EYLFDKHTL 172
>sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) (Ferritin X) (Ferritin H')
Length = 176
Score = 61.6 bits (148), Expect = 1e-09
Identities = 35/98 (35%), Positives = 52/98 (53%)
Frame = -3
Query: 521 EGRYTEELIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLA 342
E + E+ +++Q RG +V D+K E E E Q L LEK V+Q L L KLA
Sbjct: 59 EREHAEKFMKYQNKRGGRVVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLA 118
Query: 341 CEKLDVDLTSFLKDRVILRQIKVIRKRASQLRNLRRSG 228
+K+D L FL+ + Q+K I++ + NL+R G
Sbjct: 119 TDKVDPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLG 156
>sp|P42577|FRIS_LYMST Soma ferritin
Length = 174
Score = 61.2 bits (147), Expect = 2e-09
Identities = 34/119 (28%), Positives = 60/119 (50%)
Frame = -3
Query: 563 LMSFGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLE 384
L F + F+ + E + E+L+++Q RG ++ D+K + E E Q L LE
Sbjct: 46 LPGFHKFFKHQSEEEREHAEKLMKYQNKRGGRIVLQDIKKPDRDEWGTGLEAMQVALQLE 105
Query: 383 KDVHQNTLRLCKLACEKLDVDLTSFLKDRVILRQIKVIRKRASQLRNLRRSGDDVTPFL 207
K V+Q+ L L KL D + FL+ + Q+K I++ + + NL+R G + ++
Sbjct: 106 KSVNQSLLDLHKLCTSHDDAQMADFLESEFLEEQVKSIKELSDYITNLKRVGPGLGEYI 164
>sp|P25915|FRIH_RABIT Ferritin heavy chain (Ferritin H subunit)
Length = 164
Score = 60.1 bits (144), Expect = 4e-09
Identities = 34/112 (30%), Positives = 58/112 (51%)
Frame = -3
Query: 563 LMSFGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLE 384
L +F + F E + E+L++ Q RG ++ D+K E+ + + L+LE
Sbjct: 30 LKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPEYDDWESGLNAMECALHLE 89
Query: 383 KDVHQNTLRLCKLACEKLDVDLTSFLKDRVILRQIKVIRKRASQLRNLRRSG 228
K V+Q+ L L KLA +K D L F++ + Q+K I++ + NLR+ G
Sbjct: 90 KSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMG 141
>sp|P08267|FRIH_CHICK Ferritin heavy chain (Ferritin H subunit)
Length = 180
Score = 59.7 bits (143), Expect = 5e-09
Identities = 34/112 (30%), Positives = 58/112 (51%)
Frame = -3
Query: 563 LMSFGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLE 384
L +F + F E + E+L++ Q RG ++ D+K + + + L+LE
Sbjct: 48 LKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDRDDWENGLTAMECALHLE 107
Query: 383 KDVHQNTLRLCKLACEKLDVDLTSFLKDRVILRQIKVIRKRASQLRNLRRSG 228
K+V+Q+ L L KLA EK D L F++ + Q+K I++ + NLR+ G
Sbjct: 108 KNVNQSLLELHKLATEKNDPHLCDFIETHYLDEQVKAIKQLGDHVTNLRKMG 159
>sp|P07229|FRI1_RANCA Ferritin, higher subunit (Ferritin H)
Length = 176
Score = 59.3 bits (142), Expect = 7e-09
Identities = 36/112 (32%), Positives = 56/112 (50%)
Frame = -3
Query: 563 LMSFGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLE 384
L + + F+ E + E+L++ Q RG ++ DVK E E E Q L LE
Sbjct: 45 LHNVAKFFKEQSHEEREHAEKLMKDQNKRGGRIVLQDVKKPERDEWGNTLEAMQAALQLE 104
Query: 383 KDVHQNTLRLCKLACEKLDVDLTSFLKDRVILRQIKVIRKRASQLRNLRRSG 228
K V+Q L L K+ +K+D L FL+ + Q+K I++ + NL+R G
Sbjct: 105 KTVNQALLDLHKVGSDKVDPHLCDFLETEYLEEQVKSIKQLGDYITNLKRLG 156
>sp|Q5R8J7|FRIH_PONPY Ferritin heavy chain (Ferritin H subunit)
Length = 183
Score = 58.9 bits (141), Expect = 9e-09
Identities = 34/112 (30%), Positives = 58/112 (51%)
Frame = -3
Query: 563 LMSFGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLE 384
L +F + F E + E+L++ Q RG ++ D+K + + + L+LE
Sbjct: 49 LKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLE 108
Query: 383 KDVHQNTLRLCKLACEKLDVDLTSFLKDRVILRQIKVIRKRASQLRNLRRSG 228
K+V+Q+ L L KLA +K D L FL+ + Q+K I++ + NLR+ G
Sbjct: 109 KNVNQSLLELHKLATDKNDPHLCDFLETHYLNEQVKAIKELGDHVTNLRKMG 160
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,270,937
Number of Sequences: 369166
Number of extensions: 1025613
Number of successful extensions: 2607
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2607
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)