Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_P18
(501 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51150|RAB7_MOUSE Ras-related protein Rab-7 >gi|1709999|... 171 7e-43
sp|P18067|RAB7_CANFA Ras-related protein Rab-7 171 7e-43
sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related p... 171 7e-43
sp|P36411|RAB7_DICDI Ras-related protein Rab7 162 4e-40
sp|O97572|RAB7_RABIT Ras-related protein Rab-7 161 7e-40
sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7 153 2e-37
sp|O94655|YPT7_SCHPO Ras-related protein ypt7 146 3e-35
sp|P31022|RAB7_PEA Ras-related protein Rab7 144 2e-34
sp|O24461|RAB7_PRUAR Ras-related protein Rab7 142 6e-34
sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 141 1e-33
>sp|P51150|RAB7_MOUSE Ras-related protein Rab-7
sp|P51149|RAB7_HUMAN Ras-related protein Rab-7
Length = 207
Score = 171 bits (434), Expect = 7e-43
Identities = 78/100 (78%), Positives = 88/100 (88%)
Frame = +2
Query: 2 SLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLES 181
SLGVAFYRGADCCVLV+DV PNTFKTLDSWRDEFLIQ+ PRDPE FPFVV+GNK+DLE+
Sbjct: 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131
Query: 182 RAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVAR 301
R V+ +RAQ WC SK +IPYFE SAKEA+NVEQAF +AR
Sbjct: 132 RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>sp|P18067|RAB7_CANFA Ras-related protein Rab-7
Length = 207
Score = 171 bits (434), Expect = 7e-43
Identities = 78/100 (78%), Positives = 88/100 (88%)
Frame = +2
Query: 2 SLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLES 181
SLGVAFYRGADCCVLV+DV PNTFKTLDSWRDEFLIQ+ PRDPE FPFVV+GNK+DLE+
Sbjct: 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131
Query: 182 RAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVAR 301
R V+ +RAQ WC SK +IPYFE SAKEA+NVEQAF +AR
Sbjct: 132 RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related protein P23) (RAS-related
protein BRL-RAS)
Length = 207
Score = 171 bits (434), Expect = 7e-43
Identities = 78/100 (78%), Positives = 88/100 (88%)
Frame = +2
Query: 2 SLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLES 181
SLGVAFYRGADCCVLV+DV PNTFKTLDSWRDEFLIQ+ PRDPE FPFVV+GNK+DLE+
Sbjct: 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131
Query: 182 RAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVAR 301
R V+ +RAQ WC SK +IPYFE SAKEA+NVEQAF +AR
Sbjct: 132 RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>sp|P36411|RAB7_DICDI Ras-related protein Rab7
Length = 203
Score = 162 bits (410), Expect = 4e-40
Identities = 76/101 (75%), Positives = 87/101 (86%), Gaps = 1/101 (0%)
Frame = +2
Query: 2 SLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLES 181
SLGVAFYRGADCCVL YDV + TF+ LDSWRDEFLIQ+GPRDP+ FPFVV+GNK+DLE+
Sbjct: 72 SLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLEN 131
Query: 182 -RAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVAR 301
R VS +RA WCQSKG+IPYFE SAKEA+NVEQAF +AR
Sbjct: 132 QRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIAR 172
>sp|O97572|RAB7_RABIT Ras-related protein Rab-7
Length = 207
Score = 161 bits (408), Expect = 7e-40
Identities = 75/100 (75%), Positives = 85/100 (85%)
Frame = +2
Query: 2 SLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLES 181
SL VAFYRGADCCVLV+DV PNTFKTLDSWR EFLIQ+ PRDPE FPFVV+GNK+DLE+
Sbjct: 72 SLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVLGNKIDLEN 131
Query: 182 RAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVAR 301
R V+ +RAQ W SK +IPYFE SAKEA+NVEQAF +AR
Sbjct: 132 RQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7
Length = 205
Score = 153 bits (387), Expect = 2e-37
Identities = 72/102 (70%), Positives = 84/102 (82%), Gaps = 2/102 (1%)
Frame = +2
Query: 2 SLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE- 178
SLGVAFYRGADCCVLVYDV +F LDSWRDEFLIQ+ PRDP+ FPFVV+GNK+D+E
Sbjct: 72 SLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPFVVLGNKIDMEE 131
Query: 179 -SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVAR 301
R +S +RA +CQSKG+IPYFE SAKEA+NVEQAF +AR
Sbjct: 132 SKRVISTKRAMTFCQSKGNIPYFETSAKEAINVEQAFEVIAR 173
>sp|O94655|YPT7_SCHPO Ras-related protein ypt7
Length = 205
Score = 146 bits (368), Expect = 3e-35
Identities = 73/117 (62%), Positives = 91/117 (77%), Gaps = 3/117 (2%)
Frame = +2
Query: 2 SLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE- 178
SLGVAFYRGADCCVLVYDV +F+TLDSWRDEFLIQ+ P +PE FPF+++GNKVD+E
Sbjct: 72 SLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEE 131
Query: 179 -SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARLHWLRNDV-DICSDF 343
R VS +A +CQ++G+IPYFE SAKEA+NV++AF VA+L D DI +DF
Sbjct: 132 QKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMDSDDIAADF 188
>sp|P31022|RAB7_PEA Ras-related protein Rab7
Length = 206
Score = 144 bits (362), Expect = 2e-34
Identities = 66/103 (64%), Positives = 83/103 (80%), Gaps = 3/103 (2%)
Frame = +2
Query: 2 SLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE- 178
SLGVAFYRGADCCVLVYDV +F L++WR+EFLIQ+ P DPE FPFVVIGNK+D++
Sbjct: 72 SLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDG 131
Query: 179 --SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVAR 301
SR VS ++A+ WC +KG+IPYFE SAKE +NVE+AF +A+
Sbjct: 132 GNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAK 174
>sp|O24461|RAB7_PRUAR Ras-related protein Rab7
Length = 207
Score = 142 bits (357), Expect = 6e-34
Identities = 65/103 (63%), Positives = 83/103 (80%), Gaps = 3/103 (2%)
Frame = +2
Query: 2 SLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE- 178
SLGVAFYRGADCCVLVYDV + +F+ L++WR+EFLIQ+ P DPE FPFVV+GNK+D++
Sbjct: 72 SLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDG 131
Query: 179 --SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVAR 301
SR VS ++A+ WC SKG+IPYFE SAKE NV+ AF +A+
Sbjct: 132 GNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAK 174
>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7
Length = 207
Score = 141 bits (355), Expect = 1e-33
Identities = 66/103 (64%), Positives = 82/103 (79%), Gaps = 3/103 (2%)
Frame = +2
Query: 2 SLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE- 178
SLGVAFYRGADCCVLV+DV + +F L++WR+EFLIQ+ P DPE FPFVV+GNKVD++
Sbjct: 72 SLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDG 131
Query: 179 --SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVAR 301
SR VS ++A+ WC SKG+IPYFE SAKE NV+ AF +AR
Sbjct: 132 GNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIAR 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,153,246
Number of Sequences: 369166
Number of extensions: 1092706
Number of successful extensions: 3221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2962
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)