Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_P17
(310 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O02696|P101_PIG Phosphatidylinositol-4,5-bisphosphate 3-... 29 3.9
sp|Q5BKF8|CCNL2_XENTR Cyclin-L2 28 8.6
>sp|O02696|P101_PIG Phosphatidylinositol-4,5-bisphosphate 3-kinase regulatory subunit
(IB PI3-kinase p101 subunit) (PtdIns-3-kinase p101)
(PI3K) (p101-PI3K)
Length = 877
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -2
Query: 246 VCSFKNSIRIIKLIIGRSRAHIHFPLSLSLAPPRARAFPRYTPAPASTRAC 94
VC ++ +I++ +I + + P SL PP R P Y PAPA+ C
Sbjct: 814 VCLDQDERKILQSVIRCEVSPCYKPEKSSLCPPPQR--PSYPPAPATPDLC 862
>sp|Q5BKF8|CCNL2_XENTR Cyclin-L2
Length = 497
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 147 RARAFPRYTPAPASTRACVCVRRIFFFTRAPAGHFP*FFYIFGALE 10
R F R+ P T AC C+ P + P +FY+FGA E
Sbjct: 206 RTDVFVRFNP---ETIACACIFLAARTLEIPLPNRPHWFYLFGASE 248
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,330,883
Number of Sequences: 369166
Number of extensions: 405431
Number of successful extensions: 1030
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 68,354,980
effective HSP length: 71
effective length of database: 55,238,795
effective search space used: 1712402645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)