Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_O23
(651 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha) 265 1e-70
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 265 1e-70
sp|P05303|EF12_DROME Elongation factor 1-alpha (EF-1-alpha) 265 1e-70
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 264 1e-70
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 263 4e-70
sp|P19039|EF1A_APIME Elongation factor 1-alpha (EF-1-alpha) 262 5e-70
sp|Q01520|EF1A_PODAN Elongation factor 1-alpha (EF-1-alpha) 261 8e-70
sp|Q01765|EF1A_PODCU Elongation factor 1-alpha (EF-1-alpha) 261 8e-70
sp|Q9YIC0|EF1A_ORYLA Elongation factor 1-alpha (EF-1-alpha) 261 8e-70
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 261 1e-69
>sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 265 bits (676), Expect = 1e-70
Identities = 135/187 (72%), Positives = 150/187 (80%)
Frame = +1
Query: 1 HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 180
HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE
Sbjct: 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66
Query: 181 RERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAG 360
RERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEFEAG
Sbjct: 67 RERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126
Query: 361 ISKNGQTREHALFGLYSWSKANDLLVLTKWIRLNLHLATKDSRKSRKKLAVI*KKLDINQ 540
ISKNGQTREHAL Y+ ++ + K + + +K+++ KK+ N
Sbjct: 127 ISKNGQTREHALLA-YTLGVKQLIVGVNKMDSTEPPFSEARFEEIKKEVSAYIKKIGYNP 185
Query: 541 MQ*LFVP 561
FVP
Sbjct: 186 AAVAFVP 192
Score = 92.0 bits (227), Expect = 1e-18
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +3
Query: 432 VGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFRSLFSGWNGDNMIEESTNM 611
VGVNKMDSTEPPFS+ RFEEIKKEV +Y+KK+GY P AVAF + SGW+GDNM+E S +
Sbjct: 150 VGVNKMDSTEPPFSEARFEEIKKEVSAYIKKIGYNPAAVAFVPI-SGWHGDNMLEASDRL 208
Query: 612 P 614
P
Sbjct: 209 P 209
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 265 bits (676), Expect = 1e-70
Identities = 127/132 (96%), Positives = 132/132 (100%)
Frame = +1
Query: 1 HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 180
HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE
Sbjct: 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66
Query: 181 RERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAG 360
RERGITIDIALWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGTGEFEAG
Sbjct: 67 RERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 126
Query: 361 ISKNGQTREHAL 396
ISKNGQTREHAL
Sbjct: 127 ISKNGQTREHAL 138
Score = 95.5 bits (236), Expect = 1e-19
Identities = 45/61 (73%), Positives = 52/61 (85%)
Frame = +3
Query: 432 VGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFRSLFSGWNGDNMIEESTNM 611
VGVNKMDSTEPP+S+ RFEEIKKEV SY+KK+GY P AVAF + SGW+GDNM+E ST M
Sbjct: 150 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPI-SGWHGDNMLEPSTKM 208
Query: 612 P 614
P
Sbjct: 209 P 209
>sp|P05303|EF12_DROME Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 265 bits (676), Expect = 1e-70
Identities = 127/132 (96%), Positives = 132/132 (100%)
Frame = +1
Query: 1 HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 180
HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE
Sbjct: 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66
Query: 181 RERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAG 360
RERGITIDIALWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGTGEFEAG
Sbjct: 67 RERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 126
Query: 361 ISKNGQTREHAL 396
ISKNGQTREHAL
Sbjct: 127 ISKNGQTREHAL 138
Score = 90.9 bits (224), Expect = 3e-18
Identities = 42/61 (68%), Positives = 51/61 (83%)
Frame = +3
Query: 432 VGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFRSLFSGWNGDNMIEESTNM 611
VGVNKMDSTEPP+S+ R+EEIKKEV SY+KK+GY P +VAF + SGW+GDNM+E S M
Sbjct: 150 VGVNKMDSTEPPYSEARYEEIKKEVSSYIKKIGYNPASVAFVPI-SGWHGDNMLEPSEKM 208
Query: 612 P 614
P
Sbjct: 209 P 209
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 264 bits (675), Expect = 1e-70
Identities = 127/132 (96%), Positives = 131/132 (99%)
Frame = +1
Query: 1 HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 180
HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE
Sbjct: 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66
Query: 181 RERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAG 360
RERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGTGEFEAG
Sbjct: 67 RERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 126
Query: 361 ISKNGQTREHAL 396
ISKNGQTREHAL
Sbjct: 127 ISKNGQTREHAL 138
Score = 95.1 bits (235), Expect = 1e-19
Identities = 44/61 (72%), Positives = 53/61 (86%)
Frame = +3
Query: 432 VGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFRSLFSGWNGDNMIEESTNM 611
VGVNKMDS+EPP+S+ R+EEIKKEV SY+KK+GY P AVAF + SGW+GDNM+E STNM
Sbjct: 150 VGVNKMDSSEPPYSEARYEEIKKEVSSYIKKIGYNPAAVAFVPI-SGWHGDNMLEPSTNM 208
Query: 612 P 614
P
Sbjct: 209 P 209
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 263 bits (671), Expect = 4e-70
Identities = 126/132 (95%), Positives = 130/132 (98%)
Frame = +1
Query: 1 HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 180
HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE
Sbjct: 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66
Query: 181 RERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAG 360
RERGITIDIALWKFET K+Y+T+IDAPGHRDFIKNMITGTSQADCAVLVVA GTGEFEAG
Sbjct: 67 RERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAG 126
Query: 361 ISKNGQTREHAL 396
ISKNGQTREHAL
Sbjct: 127 ISKNGQTREHAL 138
Score = 79.7 bits (195), Expect = 6e-15
Identities = 38/61 (62%), Positives = 46/61 (75%)
Frame = +3
Query: 432 VGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFRSLFSGWNGDNMIEESTNM 611
V NKMDSTEPPFS+ RF EI EV ++KK+GY P AV F + SG+NGDNM+E S+NM
Sbjct: 150 VACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPI-SGFNGDNMLEVSSNM 208
Query: 612 P 614
P
Sbjct: 209 P 209
>sp|P19039|EF1A_APIME Elongation factor 1-alpha (EF-1-alpha)
Length = 461
Score = 262 bits (670), Expect = 5e-70
Identities = 134/187 (71%), Positives = 151/187 (80%)
Frame = +1
Query: 1 HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 180
HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE
Sbjct: 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66
Query: 181 RERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAG 360
RERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEFEAG
Sbjct: 67 RERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAG 126
Query: 361 ISKNGQTREHALFGLYSWSKANDLLVLTKWIRLNLHLATKDSRKSRKKLAVI*KKLDINQ 540
ISKNGQTREHAL ++ ++ + K + + + +K+++ KK+ N
Sbjct: 127 ISKNGQTREHALLA-FTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNT 185
Query: 541 MQ*LFVP 561
FVP
Sbjct: 186 ASVAFVP 192
Score = 83.6 bits (205), Expect = 4e-16
Identities = 39/61 (63%), Positives = 48/61 (78%)
Frame = +3
Query: 432 VGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFRSLFSGWNGDNMIEESTNM 611
VGVNKMD T+PP+S+ RFEEIKKEV SY+KK+GY +VAF + SGW+GDNM+E S
Sbjct: 150 VGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPI-SGWHGDNMLEPSPKT 208
Query: 612 P 614
P
Sbjct: 209 P 209
>sp|Q01520|EF1A_PODAN Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 261 bits (668), Expect = 8e-70
Identities = 138/211 (65%), Positives = 157/211 (74%), Gaps = 5/211 (2%)
Frame = +1
Query: 1 HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 180
HIN+VVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAE
Sbjct: 8 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAE 67
Query: 181 RERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAG 360
RERGITIDIALWKFET K+YVTVIDAPGHRDFIKNMITGTSQADCA+L++AAGTGEFEAG
Sbjct: 68 RERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAG 127
Query: 361 ISKNGQTREHAL----FGLYSWSKANDLLVLTKWIRLNLHLATKDSRKSRKKLAVI*KKL 528
ISK+GQTREHAL G+ A + + TKW + K++ KK+
Sbjct: 128 ISKDGQTREHALLAYTLGVKQLIVAINKMDTTKWSEARFNEIIKETSN-------FIKKV 180
Query: 529 DINQMQ*LFVPYF-LAGTEII**KRAPTCPW 618
N FVP G ++ + + CPW
Sbjct: 181 GYNPKTVAFVPISGFNGDNML--EASTNCPW 209
>sp|Q01765|EF1A_PODCU Elongation factor 1-alpha (EF-1-alpha)
Length = 461
Score = 261 bits (668), Expect = 8e-70
Identities = 138/211 (65%), Positives = 157/211 (74%), Gaps = 5/211 (2%)
Frame = +1
Query: 1 HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 180
HIN+VVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAE
Sbjct: 8 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAE 67
Query: 181 RERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAG 360
RERGITIDIALWKFET K+YVTVIDAPGHRDFIKNMITGTSQADCA+L++AAGTGEFEAG
Sbjct: 68 RERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAG 127
Query: 361 ISKNGQTREHAL----FGLYSWSKANDLLVLTKWIRLNLHLATKDSRKSRKKLAVI*KKL 528
ISK+GQTREHAL G+ A + + TKW + K++ KK+
Sbjct: 128 ISKDGQTREHALLAYTLGVKQLIVAINKMDTTKWSEARFNEIIKETSN-------FIKKV 180
Query: 529 DINQMQ*LFVPYF-LAGTEII**KRAPTCPW 618
N FVP G ++ + + CPW
Sbjct: 181 GYNPKTVAFVPISGFNGDNML--EASTNCPW 209
>sp|Q9YIC0|EF1A_ORYLA Elongation factor 1-alpha (EF-1-alpha)
Length = 461
Score = 261 bits (668), Expect = 8e-70
Identities = 126/132 (95%), Positives = 130/132 (98%)
Frame = +1
Query: 1 HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 180
HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVLDKLKAE
Sbjct: 7 HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAE 66
Query: 181 RERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAG 360
RERGITIDIALWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEFEAG
Sbjct: 67 RERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126
Query: 361 ISKNGQTREHAL 396
ISKNGQTREHAL
Sbjct: 127 ISKNGQTREHAL 138
Score = 87.0 bits (214), Expect = 4e-17
Identities = 41/60 (68%), Positives = 49/60 (81%)
Frame = +3
Query: 432 VGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFRSLFSGWNGDNMIEESTNM 611
VGVNKMDSTEPP+S RFEEI+KEV +Y+KK+GY P AVAF + SGW+GDNM+E S M
Sbjct: 150 VGVNKMDSTEPPYSQARFEEIQKEVSTYIKKIGYNPAAVAFVPI-SGWHGDNMLEASDKM 208
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 261 bits (667), Expect = 1e-69
Identities = 134/187 (71%), Positives = 150/187 (80%)
Frame = +1
Query: 1 HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 180
HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVLDKLKAE
Sbjct: 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAE 66
Query: 181 RERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAG 360
RERGITIDI+LWKFETTK+Y+T+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEFEAG
Sbjct: 67 RERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126
Query: 361 ISKNGQTREHALFGLYSWSKANDLLVLTKWIRLNLHLATKDSRKSRKKLAVI*KKLDINQ 540
ISKNGQTREHAL Y+ ++ + K + K + K+++ KK+ N
Sbjct: 127 ISKNGQTREHALLA-YTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNP 185
Query: 541 MQ*LFVP 561
FVP
Sbjct: 186 ATVPFVP 192
Score = 85.1 bits (209), Expect = 1e-16
Identities = 39/61 (63%), Positives = 49/61 (80%)
Frame = +3
Query: 432 VGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFRSLFSGWNGDNMIEESTNM 611
VGVNKMDSTEP +S+KR++EI KEV +Y+KK+GY P V F + SGW+GDNM+E S NM
Sbjct: 150 VGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPI-SGWHGDNMLEPSPNM 208
Query: 612 P 614
P
Sbjct: 209 P 209
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,605,614
Number of Sequences: 369166
Number of extensions: 1412883
Number of successful extensions: 7002
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5973
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)