Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_O20
(293 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 173 1e-43
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 173 1e-43
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 173 1e-43
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 173 1e-43
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 173 1e-43
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 173 1e-43
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 173 1e-43
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 173 1e-43
sp|P52273|TBA_BOMMO Tubulin alpha chain 173 1e-43
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 173 1e-43
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 173 bits (439), Expect = 1e-43
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +1
Query: 1 ASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 180
A+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA
Sbjct: 330 AAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 389
Query: 181 RLDHKFDLMYAKRAFVHWYVGE 246
RLDHKFDLMYAKRAFVHWYVGE
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGE 411
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 249 MEEHEFSEAREDLAA 293
MEE EFSEAREDLAA
Sbjct: 413 MEEGEFSEAREDLAA 427
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 173 bits (439), Expect = 1e-43
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +1
Query: 1 ASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 180
A+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA
Sbjct: 330 AAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 389
Query: 181 RLDHKFDLMYAKRAFVHWYVGE 246
RLDHKFDLMYAKRAFVHWYVGE
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGE 411
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 249 MEEHEFSEAREDLAA 293
MEE EFSEAREDLAA
Sbjct: 413 MEEGEFSEAREDLAA 427
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 173 bits (439), Expect = 1e-43
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +1
Query: 1 ASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 180
A+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA
Sbjct: 330 AAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 389
Query: 181 RLDHKFDLMYAKRAFVHWYVGE 246
RLDHKFDLMYAKRAFVHWYVGE
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGE 411
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 249 MEEHEFSEAREDLAA 293
MEE EFSEAREDLAA
Sbjct: 413 MEEGEFSEAREDLAA 427
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 173 bits (439), Expect = 1e-43
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +1
Query: 1 ASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 180
A+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA
Sbjct: 330 AAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 389
Query: 181 RLDHKFDLMYAKRAFVHWYVGE 246
RLDHKFDLMYAKRAFVHWYVGE
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGE 411
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 249 MEEHEFSEAREDLAA 293
MEE EFSEARED+AA
Sbjct: 413 MEEGEFSEAREDMAA 427
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 173 bits (439), Expect = 1e-43
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +1
Query: 1 ASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 180
A+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA
Sbjct: 330 AAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 389
Query: 181 RLDHKFDLMYAKRAFVHWYVGE 246
RLDHKFDLMYAKRAFVHWYVGE
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGE 411
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 249 MEEHEFSEAREDLAA 293
MEE EFSEARED+AA
Sbjct: 413 MEEGEFSEAREDMAA 427
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 173 bits (439), Expect = 1e-43
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +1
Query: 1 ASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 180
A+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA
Sbjct: 330 AAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 389
Query: 181 RLDHKFDLMYAKRAFVHWYVGE 246
RLDHKFDLMYAKRAFVHWYVGE
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGE 411
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 249 MEEHEFSEAREDLAA 293
MEE EFSEAREDLAA
Sbjct: 413 MEEGEFSEAREDLAA 427
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 173 bits (439), Expect = 1e-43
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +1
Query: 1 ASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 180
A+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA
Sbjct: 330 AAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 389
Query: 181 RLDHKFDLMYAKRAFVHWYVGE 246
RLDHKFDLMYAKRAFVHWYVGE
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGE 411
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 249 MEEHEFSEAREDLAA 293
MEE EFSEAREDLAA
Sbjct: 413 MEEGEFSEAREDLAA 427
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 173 bits (439), Expect = 1e-43
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +1
Query: 1 ASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 180
A+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA
Sbjct: 330 AAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 389
Query: 181 RLDHKFDLMYAKRAFVHWYVGE 246
RLDHKFDLMYAKRAFVHWYVGE
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGE 411
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 249 MEEHEFSEAREDLAA 293
MEE EFSEAREDLAA
Sbjct: 413 MEEGEFSEAREDLAA 427
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 173 bits (439), Expect = 1e-43
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +1
Query: 1 ASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 180
A+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA
Sbjct: 330 AAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 389
Query: 181 RLDHKFDLMYAKRAFVHWYVGE 246
RLDHKFDLMYAKRAFVHWYVGE
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGE 411
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 249 MEEHEFSEAREDLAA 293
MEE EFSEAREDLAA
Sbjct: 413 MEEGEFSEAREDLAA 427
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 173 bits (439), Expect = 1e-43
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +1
Query: 1 ASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 180
A+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA
Sbjct: 291 AAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 350
Query: 181 RLDHKFDLMYAKRAFVHWYVGE 246
RLDHKFDLMYAKRAFVHWYVGE
Sbjct: 351 RLDHKFDLMYAKRAFVHWYVGE 372
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 249 MEEHEFSEAREDLAA 293
MEE EFSEARED+AA
Sbjct: 374 MEEGEFSEAREDMAA 388
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,461,958
Number of Sequences: 369166
Number of extensions: 630245
Number of successful extensions: 2175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1993
length of database: 68,354,980
effective HSP length: 67
effective length of database: 55,977,735
effective search space used: 1679332050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)