Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_O18
(264 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40217|IF32_YEAST Eukaryotic translation initiation fact... 89 3e-18
sp|P79083|IF32_SCHPO Eukaryotic translation initiation fact... 89 4e-18
sp|Q13347|IF32_HUMAN Eukaryotic translation initiation fact... 85 4e-17
sp|Q9QZD9|IF32_MOUSE Eukaryotic translation initiation fact... 85 4e-17
sp|O02195|IF32_DROME Eukaryotic translation initiation fact... 82 4e-16
sp|Q38884|IF32_ARATH Eukaryotic translation initiation fact... 78 7e-15
sp|Q9Y3F4|STRAP_HUMAN Serine-threonine kinase receptor-asso... 49 4e-06
sp|Q9Z1Z2|STRAP_MOUSE Serine-threonine kinase receptor-asso... 49 4e-06
sp|P49695|PKWA_THECU Probable serine/threonine-protein kina... 40 0.002
sp|Q93847|YZLL_CAEEL Hypothetical WD-repeat protein K04G11.... 38 0.008
>sp|P40217|IF32_YEAST Eukaryotic translation initiation factor 3 39 kDa subunit (eIF3
p39) (Translation initiation factor eIF3, p39 subunit)
Length = 347
Score = 89.0 bits (219), Expect = 3e-18
Identities = 39/63 (61%), Positives = 50/63 (79%)
Frame = +1
Query: 1 AADVTKTAASKGKFEALFYHMIFENEITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRM 180
A DVT T+A++GKFEA FYH IFE EI V+GHFGP+N+VA +P G YASGGE+G +R+
Sbjct: 260 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 319
Query: 181 YQF 189
+ F
Sbjct: 320 HHF 322
>sp|P79083|IF32_SCHPO Eukaryotic translation initiation factor 3 39 kDa subunit (eIF3
p39) (Translation initiation factor eIF3, p39 subunit)
(Suppressor of uncontrolled mitosis 1)
Length = 328
Score = 88.6 bits (218), Expect = 4e-18
Identities = 41/63 (65%), Positives = 49/63 (77%)
Frame = +1
Query: 1 AADVTKTAASKGKFEALFYHMIFENEITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRM 180
A DVT TAA +GKFEA FYH I E E+ VKGHFGPIN++A +P G GYASGGE+G VR+
Sbjct: 255 ARDVTTTAARQGKFEARFYHAILEEELGRVKGHFGPINTIAVHPKGTGYASGGEDGYVRV 314
Query: 181 YQF 189
+ F
Sbjct: 315 HFF 317
>sp|Q13347|IF32_HUMAN Eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor-interacting
protein 1) (TRIP-1)
Length = 325
Score = 85.1 bits (209), Expect = 4e-17
Identities = 39/63 (61%), Positives = 47/63 (74%)
Frame = +1
Query: 1 AADVTKTAASKGKFEALFYHMIFENEITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRM 180
A DVT T+ GKFEA F+H+ FE E VKGHFGPINSVAF+P G Y+SGGE+G VR+
Sbjct: 252 AMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRI 311
Query: 181 YQF 189
+ F
Sbjct: 312 HYF 314
>sp|Q9QZD9|IF32_MOUSE Eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor-interacting
protein 1) (TRIP-1)
Length = 325
Score = 85.1 bits (209), Expect = 4e-17
Identities = 39/63 (61%), Positives = 47/63 (74%)
Frame = +1
Query: 1 AADVTKTAASKGKFEALFYHMIFENEITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRM 180
A DVT T+ GKFEA F+H+ FE E VKGHFGPINSVAF+P G Y+SGGE+G VR+
Sbjct: 252 AMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRI 311
Query: 181 YQF 189
+ F
Sbjct: 312 HYF 314
>sp|O02195|IF32_DROME Eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3i) (TRIP-1 homolog)
Length = 326
Score = 82.0 bits (201), Expect = 4e-16
Identities = 35/63 (55%), Positives = 47/63 (74%)
Frame = +1
Query: 1 AADVTKTAASKGKFEALFYHMIFENEITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRM 180
A +VT T+ GKF++ F+H+I+E E +KGHFGPINS+AF+P G YASGGE+G VR+
Sbjct: 254 AMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPDGKSYASGGEDGFVRV 313
Query: 181 YQF 189
F
Sbjct: 314 QTF 316
>sp|Q38884|IF32_ARATH Eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1)
Length = 328
Score = 77.8 bits (190), Expect = 7e-15
Identities = 36/63 (57%), Positives = 45/63 (71%)
Frame = +1
Query: 1 AADVTKTAASKGKFEALFYHMIFENEITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRM 180
A+ VT T GKFEA FY I + EI VKGHFGPIN++AFNP G ++SGGE+G VR+
Sbjct: 257 ASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 316
Query: 181 YQF 189
+ F
Sbjct: 317 HHF 319
>sp|Q9Y3F4|STRAP_HUMAN Serine-threonine kinase receptor-associated protein
(UNR-interacting protein) (WD-40 repeat protein PT-WD)
(MAP activator with WD repeats)
Length = 350
Score = 48.9 bits (115), Expect = 4e-06
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +1
Query: 76 EITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRMYQ 186
E+ S KGHFGPI+ V F+P G YASG E+G +R++Q
Sbjct: 257 ELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQ 293
>sp|Q9Z1Z2|STRAP_MOUSE Serine-threonine kinase receptor-associated protein
(UNR-interacting protein)
Length = 351
Score = 48.9 bits (115), Expect = 4e-06
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +1
Query: 76 EITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRMYQ 186
E+ S KGHFGPI+ V F+P G YASG E+G +R++Q
Sbjct: 257 ELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQ 293
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase pkwA
Length = 742
Score = 39.7 bits (91), Expect = 0.002
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +1
Query: 70 ENEITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRMY 183
+ E T+++GH P++SVAF+P G AS E+G +R++
Sbjct: 700 QEEHTTLEGHTEPVHSVAFHPEGTTLASASEDGTIRIW 737
Score = 32.7 bits (73), Expect = 0.26
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 7 DVTKTAASKGKFEALFYHMIFENEITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRMY 183
D + A+ A +++ E +KGH + +VAF+P G ASG +G +R++
Sbjct: 554 DGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDGTIRLW 612
Score = 32.0 bits (71), Expect = 0.45
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 73 NEITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRMY 183
+E+ +++GH + +VAF+P G ASG ++ VR++
Sbjct: 492 DELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLW 528
Score = 27.7 bits (60), Expect = 8.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 91 KGHFGPINSVAFNPTGMGYASGGEEGLVRMY 183
+GH + +VAF+P G ASG ++ +R++
Sbjct: 665 EGHTDWVRAVAFSPDGALLASGSDDRTIRLW 695
>sp|Q93847|YZLL_CAEEL Hypothetical WD-repeat protein K04G11.4 IN chromosome X
Length = 395
Score = 37.7 bits (86), Expect = 0.008
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 73 NEITSVKGHFGPINSVAFNPTGMGYASGGEEGLVRMY 183
N I S+ GH P++SV FN G ASG +G+VR++
Sbjct: 223 NTIFSIPGHEDPVSSVCFNRDGAYLASGSYDGIVRIW 259
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,438,282
Number of Sequences: 369166
Number of extensions: 442367
Number of successful extensions: 1759
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1759
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)