Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_014_O07 (837 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 287 3e-77 sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) 282 9e-76 sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E) 281 1e-75 sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 280 5e-75 sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 279 6e-75 sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 278 1e-74 sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E) 278 1e-74 sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 278 2e-74 sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) 277 2e-74 sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E) 276 5e-74
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic site) lyase) (Apurinic-apyrimidinic endonuclease) Length = 317 Score = 287 bits (734), Expect = 3e-77 Identities = 143/268 (53%), Positives = 188/268 (70%) Frame = +2 Query: 32 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211 K Y K+ F ++ K FIV ADNV S+QMQN+R LR A +++GKNTMM+ I + Sbjct: 10 KAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHL 69 Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391 NP L KL PH+KGNVGFVFT GDL V+D +L K++APA+ A+AP+ V++P Q T Sbjct: 70 ENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTG 129 Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571 LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V SEA LL ML I PF YGL + Sbjct: 130 LGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIV 189 Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751 Q+Y++GS +SP+ LDI +D+ F + +AAV L++ PT+AS PH IAN K ++ Sbjct: 190 NQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLL 249 Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835 ++ T+ KEA IKEY+KDP+KFA+ Sbjct: 250 AIAATTEVEFKEATTIKEYIKDPSKFAA 277
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) Length = 317 Score = 282 bits (721), Expect = 9e-76 Identities = 142/268 (52%), Positives = 185/268 (69%) Frame = +2 Query: 32 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211 K Y K+ F +Y K FIV ADNV S+QMQN+R LR +++GKNTMM+ I + Sbjct: 10 KAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMRKAIRGHL 69 Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391 N L KL PH+KGNVGFVFT GDL V+D +L K++APA+A A+AP+ V++P Q T Sbjct: 70 ENNAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTG 129 Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571 LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V SEA LL ML I PF YGL I Sbjct: 130 LGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLAI 189 Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751 Q+Y++GS +SP+ LDI +D+ F +AAVSL + PT+AS PH IAN K ++ Sbjct: 190 TQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAPHSIANGFKNLL 249 Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835 ++ T+ K+A IKE++KDP+KF + Sbjct: 250 AIAASTEVEFKQAATIKEFIKDPSKFVA 277
>sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E) Length = 317 Score = 281 bits (720), Expect = 1e-75 Identities = 145/267 (54%), Positives = 187/267 (70%) Frame = +2 Query: 32 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211 K NY K+ + Y K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I + Sbjct: 10 KSNYFLKIIQLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMRKAIRGHL 69 Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391 NP L KL PH++GNVGFVFT DL V+D++L+ K+ A A+A A+AP V VP Q T Sbjct: 70 ENNPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 129 Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571 LGPEKTSFFQAL I TKI+RGTIEI++DV LI+ GD V SEA LL ML I PF YGL I Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLII 189 Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751 QQ+Y+NGS YSP+ LDITED + + F+E + +A+V L + PTLAS+PH I N K V+ Sbjct: 190 QQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVL 249 Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFA 832 ++V TDY+ A+ +K +L DP++FA Sbjct: 250 RVAVETDYSFPMADKVKAFLADPSRFA 276
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) Length = 317 Score = 280 bits (715), Expect = 5e-75 Identities = 146/268 (54%), Positives = 183/268 (68%) Frame = +2 Query: 32 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211 K NY K+ Y K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I + Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69 Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391 NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T Sbjct: 70 ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 129 Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571 LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL I Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLII 189 Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751 QQ+++NGS YSP+ LDITE + F+E + VA+V L + PT+ASVPH I N K V+ Sbjct: 190 QQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVL 249 Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835 LSV TDY AE +K +L DP+ FA+ Sbjct: 250 ALSVETDYTFPLAEKVKAFLADPSAFAA 277
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 Length = 312 Score = 279 bits (714), Expect = 6e-75 Identities = 138/268 (51%), Positives = 190/268 (70%) Frame = +2 Query: 32 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211 K NY KL F +Y K +V DNV S+QMQ +R+ +R AEI++GKNTM++ + + Sbjct: 10 KANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHL 69 Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391 NP L KL PH+ NVGFVFT DL ++ +L + APAKA A+AP V +P Q T Sbjct: 70 GKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTG 129 Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571 +GPEKTSFFQALQIPTKI RGTIEI+NDV LIK GD V SE+ LL ML + PF YGL + Sbjct: 130 MGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVV 189 Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751 +Q+Y++G+ Y+P+ LD+T +++ + F+ + VA+VSLA+N PTLASV H +AN ++ ++ Sbjct: 190 RQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNML 249 Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835 G++ VTD + KEAE IK ++ DP+KFA+ Sbjct: 250 GVAAVTDVSFKEAETIKAFIADPSKFAA 277
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) Length = 317 Score = 278 bits (712), Expect = 1e-74 Identities = 144/268 (53%), Positives = 183/268 (68%) Frame = +2 Query: 32 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211 K NY K+ Y K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I + Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69 Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391 NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T Sbjct: 70 ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 129 Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571 LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL I Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVI 189 Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751 QQ+++NGS Y+P+ LDITE+ + F+E + VA+V L + PT+ASVPH I N K V+ Sbjct: 190 QQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVL 249 Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835 LSV TDY AE +K +L DP+ F + Sbjct: 250 ALSVETDYTFPLAEKVKAFLADPSAFVA 277
>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E) Length = 316 Score = 278 bits (711), Expect = 1e-74 Identities = 141/268 (52%), Positives = 184/268 (68%) Frame = +2 Query: 32 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211 K NY K+ Y K F+V ADNV S+QMQ +R LR A +++GKNTMM+ I + Sbjct: 10 KSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69 Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391 NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T Sbjct: 70 ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTG 129 Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571 LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL I Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVI 189 Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751 QQ+++NGS Y+P+ LDITE+ + + F+E + VA+V L + PT+ASVPH I N K V+ Sbjct: 190 QQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVL 249 Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835 ++V TDY AE +K +L DP+ F + Sbjct: 250 AVAVETDYTFPLAEKVKAFLADPSAFVA 277
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) Length = 319 Score = 278 bits (710), Expect = 2e-74 Identities = 146/270 (54%), Positives = 184/270 (68%), Gaps = 3/270 (1%) Frame = +2 Query: 32 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211 K NY K+ + K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I + Sbjct: 10 KSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMMRKAIRGHL 69 Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391 NP L +L PH++GNVGFVFT DL V+D++L+ K+ A A+A A+AP V VP Q T Sbjct: 70 ENNPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPCEVTVPAQNTG 129 Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQL---LQMLKIFPFQYG 562 LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA L L ML I PF YG Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNMLNISPFSYG 189 Query: 563 LKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIK 742 L IQQ+Y+NGS YSP+ LDITED + + F++ + +A+V L + PTLAS+PH I N K Sbjct: 190 LIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYK 249 Query: 743 AVIGLSVVTDYNLKEAEGIKEYLKDPTKFA 832 V+ ++V TDY AE +K YL DPT FA Sbjct: 250 RVLAVTVETDYTFPLAEKVKAYLADPTAFA 279
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) Length = 315 Score = 277 bits (709), Expect = 2e-74 Identities = 144/266 (54%), Positives = 182/266 (68%) Frame = +2 Query: 32 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211 K NY K+ Y K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I + Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69 Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391 N L KL PH+KGNVGFVFT DL V+D++L+ K+ A A+A A+AP V VP Q T Sbjct: 70 ENNSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTG 129 Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571 LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL I Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLII 189 Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751 QQ+Y+NGS YSP+ LDITED + F+E + +A+V L + PT+ASVPH + N K V+ Sbjct: 190 QQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVL 249 Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKF 829 L+V TDY+ A+ +K +L DP+ F Sbjct: 250 ALAVETDYSFPLADKVKAFLADPSAF 275
>sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E) Length = 309 Score = 276 bits (706), Expect = 5e-74 Identities = 143/268 (53%), Positives = 182/268 (67%) Frame = +2 Query: 32 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211 K NY K+ Y K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I + Sbjct: 1 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 60 Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391 NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T Sbjct: 61 ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 120 Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571 LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD SEA LL ML I PF +GL I Sbjct: 121 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKEGASEATLLNMLNISPFSFGLVI 180 Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751 QQ+++NGS Y+P+ LDITE+ + F+E + VA+V L + PT+ASVPH I N K V+ Sbjct: 181 QQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVL 240 Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835 LSV TDY AE +K +L DP+ F + Sbjct: 241 ALSVETDYTFPLAEKVKAFLADPSAFVA 268
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,523,703 Number of Sequences: 369166 Number of extensions: 1659257 Number of successful extensions: 4686 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4518 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4648 length of database: 68,354,980 effective HSP length: 109 effective length of database: 48,218,865 effective search space used: 8148988185 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)