Planarian EST Database


Dr_sW_014_O07

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_014_O07
         (837 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19889|RLA0_DROME  60S acidic ribosomal protein P0 (DNA-(...   287   3e-77
sp|Q9U3U0|RLA0_CERCA  60S acidic ribosomal protein P0 (CcP0)      282   9e-76
sp|Q90YX1|RLA0_ICTPU  60S acidic ribosomal protein P0 (L10E)      281   1e-75
sp|P19945|RLA0_RAT  60S acidic ribosomal protein P0 (L10E)        280   5e-75
sp|Q93572|RLA0_CAEEL  60S acidic ribosomal protein P0             279   6e-75
sp|P05388|RLA0_HUMAN  60S acidic ribosomal protein P0 (L10E)      278   1e-74
sp|P47826|RLA0_CHICK  60S acidic ribosomal protein P0 (L10E)      278   1e-74
sp|Q9PV90|RLA0_BRARE  60S acidic ribosomal protein P0 (L10E)      278   2e-74
sp|Q9DG68|RLA0_RANSY  60S acidic ribosomal protein P0 (L10E)      277   2e-74
sp|Q95140|RLA0_BOVIN  60S acidic ribosomal protein P0 (L10E)      276   5e-74
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
           site) lyase) (Apurinic-apyrimidinic endonuclease)
          Length = 317

 Score =  287 bits (734), Expect = 3e-77
 Identities = 143/268 (53%), Positives = 188/268 (70%)
 Frame = +2

Query: 32  KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211
           K  Y  K+   F ++ K FIV ADNV S+QMQN+R  LR  A +++GKNTMM+  I  + 
Sbjct: 10  KAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHL 69

Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391
             NP L KL PH+KGNVGFVFT GDL  V+D +L  K++APA+  A+AP+ V++P Q T 
Sbjct: 70  ENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTG 129

Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571
           LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V  SEA LL ML I PF YGL +
Sbjct: 130 LGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIV 189

Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751
            Q+Y++GS +SP+ LDI  +D+   F +    +AAV L++  PT+AS PH IAN  K ++
Sbjct: 190 NQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLL 249

Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835
            ++  T+   KEA  IKEY+KDP+KFA+
Sbjct: 250 AIAATTEVEFKEATTIKEYIKDPSKFAA 277
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0)
          Length = 317

 Score =  282 bits (721), Expect = 9e-76
 Identities = 142/268 (52%), Positives = 185/268 (69%)
 Frame = +2

Query: 32  KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211
           K  Y  K+   F +Y K FIV ADNV S+QMQN+R  LR    +++GKNTMM+  I  + 
Sbjct: 10  KAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMRKAIRGHL 69

Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391
             N  L KL PH+KGNVGFVFT GDL  V+D +L  K++APA+A A+AP+ V++P Q T 
Sbjct: 70  ENNAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTG 129

Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571
           LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V  SEA LL ML I PF YGL I
Sbjct: 130 LGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLAI 189

Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751
            Q+Y++GS +SP+ LDI  +D+   F      +AAVSL +  PT+AS PH IAN  K ++
Sbjct: 190 TQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAPHSIANGFKNLL 249

Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835
            ++  T+   K+A  IKE++KDP+KF +
Sbjct: 250 AIAASTEVEFKQAATIKEFIKDPSKFVA 277
>sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E)
          Length = 317

 Score =  281 bits (720), Expect = 1e-75
 Identities = 145/267 (54%), Positives = 187/267 (70%)
 Frame = +2

Query: 32  KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211
           K NY  K+    + Y K FIV ADNV S+QMQ +R  LR  A +++GKNTMM+  I  + 
Sbjct: 10  KSNYFLKIIQLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMRKAIRGHL 69

Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391
             NP L KL PH++GNVGFVFT  DL  V+D++L+ K+ A A+A A+AP  V VP Q T 
Sbjct: 70  ENNPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 129

Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571
           LGPEKTSFFQAL I TKI+RGTIEI++DV LI+ GD V  SEA LL ML I PF YGL I
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLII 189

Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751
           QQ+Y+NGS YSP+ LDITED + + F+E  + +A+V L +  PTLAS+PH I N  K V+
Sbjct: 190 QQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVL 249

Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFA 832
            ++V TDY+   A+ +K +L DP++FA
Sbjct: 250 RVAVETDYSFPMADKVKAFLADPSRFA 276
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
          Length = 317

 Score =  280 bits (715), Expect = 5e-75
 Identities = 146/268 (54%), Positives = 183/268 (68%)
 Frame = +2

Query: 32  KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211
           K NY  K+      Y K FIV ADNV S+QMQ +R  LR  A +++GKNTMM+  I  + 
Sbjct: 10  KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69

Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391
             NP L KL PH++GNVGFVFT  DL  ++D++L+ K+ A A+A A+AP  V VP Q T 
Sbjct: 70  ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 129

Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571
           LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V  SEA LL ML I PF +GL I
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLII 189

Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751
           QQ+++NGS YSP+ LDITE  +   F+E  + VA+V L +  PT+ASVPH I N  K V+
Sbjct: 190 QQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVL 249

Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835
            LSV TDY    AE +K +L DP+ FA+
Sbjct: 250 ALSVETDYTFPLAEKVKAFLADPSAFAA 277
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
          Length = 312

 Score =  279 bits (714), Expect = 6e-75
 Identities = 138/268 (51%), Positives = 190/268 (70%)
 Frame = +2

Query: 32  KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211
           K NY  KL   F +Y K  +V  DNV S+QMQ +R+ +R  AEI++GKNTM++  +  + 
Sbjct: 10  KANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHL 69

Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391
             NP L KL PH+  NVGFVFT  DL  ++  +L  +  APAKA A+AP  V +P Q T 
Sbjct: 70  GKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTG 129

Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571
           +GPEKTSFFQALQIPTKI RGTIEI+NDV LIK GD V  SE+ LL ML + PF YGL +
Sbjct: 130 MGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVV 189

Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751
           +Q+Y++G+ Y+P+ LD+T +++ + F+   + VA+VSLA+N PTLASV H +AN ++ ++
Sbjct: 190 RQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNML 249

Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835
           G++ VTD + KEAE IK ++ DP+KFA+
Sbjct: 250 GVAAVTDVSFKEAETIKAFIADPSKFAA 277
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
          Length = 317

 Score =  278 bits (712), Expect = 1e-74
 Identities = 144/268 (53%), Positives = 183/268 (68%)
 Frame = +2

Query: 32  KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211
           K NY  K+      Y K FIV ADNV S+QMQ +R  LR  A +++GKNTMM+  I  + 
Sbjct: 10  KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69

Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391
             NP L KL PH++GNVGFVFT  DL  ++D++L+ K+ A A+A A+AP  V VP Q T 
Sbjct: 70  ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 129

Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571
           LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V  SEA LL ML I PF +GL I
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVI 189

Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751
           QQ+++NGS Y+P+ LDITE+ +   F+E  + VA+V L +  PT+ASVPH I N  K V+
Sbjct: 190 QQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVL 249

Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835
            LSV TDY    AE +K +L DP+ F +
Sbjct: 250 ALSVETDYTFPLAEKVKAFLADPSAFVA 277
>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E)
          Length = 316

 Score =  278 bits (711), Expect = 1e-74
 Identities = 141/268 (52%), Positives = 184/268 (68%)
 Frame = +2

Query: 32  KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211
           K NY  K+      Y K F+V ADNV S+QMQ +R  LR  A +++GKNTMM+  I  + 
Sbjct: 10  KSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69

Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391
             NP L KL PH++GNVGFVFT  DL  ++D++L+ K+ A A+A A+AP  V VP Q T 
Sbjct: 70  ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTG 129

Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571
           LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V  SEA LL ML I PF +GL I
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVI 189

Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751
           QQ+++NGS Y+P+ LDITE+ + + F+E  + VA+V L +  PT+ASVPH I N  K V+
Sbjct: 190 QQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVL 249

Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835
            ++V TDY    AE +K +L DP+ F +
Sbjct: 250 AVAVETDYTFPLAEKVKAFLADPSAFVA 277
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
          Length = 319

 Score =  278 bits (710), Expect = 2e-74
 Identities = 146/270 (54%), Positives = 184/270 (68%), Gaps = 3/270 (1%)
 Frame = +2

Query: 32  KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211
           K NY  K+      + K FIV ADNV S+QMQ +R  LR  A +++GKNTMM+  I  + 
Sbjct: 10  KSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMMRKAIRGHL 69

Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391
             NP L +L PH++GNVGFVFT  DL  V+D++L+ K+ A A+A A+AP  V VP Q T 
Sbjct: 70  ENNPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPCEVTVPAQNTG 129

Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQL---LQMLKIFPFQYG 562
           LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V  SEA L   L ML I PF YG
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNMLNISPFSYG 189

Query: 563 LKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIK 742
           L IQQ+Y+NGS YSP+ LDITED + + F++  + +A+V L +  PTLAS+PH I N  K
Sbjct: 190 LIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYK 249

Query: 743 AVIGLSVVTDYNLKEAEGIKEYLKDPTKFA 832
            V+ ++V TDY    AE +K YL DPT FA
Sbjct: 250 RVLAVTVETDYTFPLAEKVKAYLADPTAFA 279
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E)
          Length = 315

 Score =  277 bits (709), Expect = 2e-74
 Identities = 144/266 (54%), Positives = 182/266 (68%)
 Frame = +2

Query: 32  KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211
           K NY  K+      Y K FIV ADNV S+QMQ +R  LR  A +++GKNTMM+  I  + 
Sbjct: 10  KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69

Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391
             N  L KL PH+KGNVGFVFT  DL  V+D++L+ K+ A A+A A+AP  V VP Q T 
Sbjct: 70  ENNSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTG 129

Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571
           LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V  SEA LL ML I PF +GL I
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLII 189

Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751
           QQ+Y+NGS YSP+ LDITED +   F+E  + +A+V L +  PT+ASVPH + N  K V+
Sbjct: 190 QQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVL 249

Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKF 829
            L+V TDY+   A+ +K +L DP+ F
Sbjct: 250 ALAVETDYSFPLADKVKAFLADPSAF 275
>sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E)
          Length = 309

 Score =  276 bits (706), Expect = 5e-74
 Identities = 143/268 (53%), Positives = 182/268 (67%)
 Frame = +2

Query: 32  KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 211
           K NY  K+      Y K FIV ADNV S+QMQ +R  LR  A +++GKNTMM+  I  + 
Sbjct: 1   KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 60

Query: 212 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 391
             NP L KL PH++GNVGFVFT  DL  ++D++L+ K+ A A+A A+AP  V VP Q T 
Sbjct: 61  ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 120

Query: 392 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 571
           LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD    SEA LL ML I PF +GL I
Sbjct: 121 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKEGASEATLLNMLNISPFSFGLVI 180

Query: 572 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVI 751
           QQ+++NGS Y+P+ LDITE+ +   F+E  + VA+V L +  PT+ASVPH I N  K V+
Sbjct: 181 QQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVL 240

Query: 752 GLSVVTDYNLKEAEGIKEYLKDPTKFAS 835
            LSV TDY    AE +K +L DP+ F +
Sbjct: 241 ALSVETDYTFPLAEKVKAFLADPSAFVA 268
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,523,703
Number of Sequences: 369166
Number of extensions: 1659257
Number of successful extensions: 4686
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4648
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)