Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_N23
(264 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O02008|TRA2_DROVI Transformer-2 sex-determining protein 29 2.9
sp|Q88WU9|SYT_LACPL Threonyl-tRNA synthetase (Threonine--tR... 28 6.4
>sp|O02008|TRA2_DROVI Transformer-2 sex-determining protein
Length = 272
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 132 TALIRLR*TEFVTIHRISQHLARHSTTVSS 43
T L+ R E++ +HRI +H HS+ SS
Sbjct: 3 TGLVNAREKEYLHLHRIDKHKCSHSSATSS 32
>sp|Q88WU9|SYT_LACPL Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 654
Score = 28.1 bits (61), Expect = 6.4
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -3
Query: 46 FRLNFHDPENQEKY 5
FRL++ DPEN+EKY
Sbjct: 426 FRLSYRDPENKEKY 439
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,565,587
Number of Sequences: 369166
Number of extensions: 463444
Number of successful extensions: 1101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)