Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_N15
(168 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P59206|LYTB_STRR6 Putative endo-beta-N-acetylglucosamini... 28 5.0
sp|P59205|LYTB_STRPN Putative endo-beta-N-acetylglucosamini... 28 5.0
sp|Q60736|ZP3R_MOUSE Zona pellucida sperm-binding protein 3... 28 8.6
>sp|P59206|LYTB_STRR6 Putative endo-beta-N-acetylglucosaminidase precursor (Murein
hydrolase)
Length = 702
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 142 FKSNNNCWLFI*KSELQHQSEQWLQLKSK 56
+ S + W +I K++ QH ++WLQ+K K
Sbjct: 129 YDSQYDAWFYI-KADGQHAEKEWLQIKGK 156
>sp|P59205|LYTB_STRPN Putative endo-beta-N-acetylglucosaminidase precursor (Murein
hydrolase)
Length = 658
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 142 FKSNNNCWLFI*KSELQHQSEQWLQLKSK 56
+ S + W +I K++ QH ++WLQ+K K
Sbjct: 129 YDSQYDAWFYI-KADGQHAEKEWLQIKGK 156
>sp|Q60736|ZP3R_MOUSE Zona pellucida sperm-binding protein 3 receptor precursor (Sperm
fertilization protein 56) (sp56)
Length = 579
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 118 LFI*KSELQHQSEQWLQLKSKLSRSMEMN 32
LF+ L+HQ E+W+QL K +SM++N
Sbjct: 545 LFLEIERLEHQKEKWIQLHRK-PQSMKIN 572
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,967,418
Number of Sequences: 369166
Number of extensions: 249801
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 68,354,980
effective HSP length: 28
effective length of database: 63,182,400
effective search space used: 1705924800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)