Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_M20
(520 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 189 4e-48
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 187 1e-47
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 177 1e-44
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 177 2e-44
sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HI... 157 2e-38
sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3) 157 2e-38
sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2) 157 2e-38
sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1) 149 5e-36
sp|P25491|MAS5_YEAST Mitochondrial protein import protein M... 147 1e-35
sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 145 4e-35
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 189 bits (479), Expect = 4e-48
Identities = 92/148 (62%), Positives = 111/148 (75%)
Frame = +2
Query: 77 MVKETKYYDILGVTPNVSEQELKKAYRTLALKYHPDKNPDAGDKFKEISHAFEVLADPKK 256
MVKET YYD+LGV PN +++ELKKAYR LALKYHPDKNP+ G+KFK+IS A+EVLAD KK
Sbjct: 1 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKK 60
Query: 257 RQIYDDGGEHALKEGGGDSGFHTPXXXXXXXXXXXXXARTRGSRKGKDVIHPLYVTLHEL 436
R++YD GGE A+KEGG GF +P R + R+GK+V+H L VTL +L
Sbjct: 61 RELYDKGGEQAIKEGGAGGGFGSP--MDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDL 118
Query: 437 YKGNTRKLAIQKNVIRDKCNGRGGKEGA 520
Y G TRKLA+QKNVI DKC GRGGK+GA
Sbjct: 119 YNGATRKLALQKNVICDKCEGRGGKKGA 146
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 187 bits (476), Expect = 1e-47
Identities = 91/148 (61%), Positives = 111/148 (75%)
Frame = +2
Query: 77 MVKETKYYDILGVTPNVSEQELKKAYRTLALKYHPDKNPDAGDKFKEISHAFEVLADPKK 256
MVKET YYD+LGV PN +++ELKKAYR LALKYHPDKNP+ G+KFK+IS A+EVL+D KK
Sbjct: 1 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKK 60
Query: 257 RQIYDDGGEHALKEGGGDSGFHTPXXXXXXXXXXXXXARTRGSRKGKDVIHPLYVTLHEL 436
R++YD GGE A+KEGG GF +P R + R+GK+V+H L VTL +L
Sbjct: 61 RELYDKGGEQAIKEGGAGGGFGSP--MDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDL 118
Query: 437 YKGNTRKLAIQKNVIRDKCNGRGGKEGA 520
Y G TRKLA+QKNVI DKC GRGGK+GA
Sbjct: 119 YNGATRKLALQKNVICDKCEGRGGKKGA 146
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 177 bits (449), Expect = 1e-44
Identities = 90/149 (60%), Positives = 108/149 (72%), Gaps = 1/149 (0%)
Frame = +2
Query: 77 MVKETKYYDILGVTPNVSEQELKKAYRTLALKYHPDKNPDAGDKFKEISHAFEVLADPKK 256
MVKET+YYDILGV P+ S +E+KKAYR LALKYHPDKNPD G+KFK IS A+EVL+DPKK
Sbjct: 1 MVKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKK 60
Query: 257 RQIYDDGGEHALKEGG-GDSGFHTPXXXXXXXXXXXXXARTRGSRKGKDVIHPLYVTLHE 433
R IYD GGE A+KEGG G F +P R R+GK+V+H L VTL +
Sbjct: 61 RDIYDQGGEQAIKEGGSGSPSFSSP--MDIFDMFFGGGGRMTRERRGKNVVHQLSVTLED 118
Query: 434 LYKGNTRKLAIQKNVIRDKCNGRGGKEGA 520
LY G T+KLA+QKNVI +KC G GGK+G+
Sbjct: 119 LYNGITKKLALQKNVICEKCEGIGGKKGS 147
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 177 bits (448), Expect = 2e-44
Identities = 89/149 (59%), Positives = 108/149 (72%), Gaps = 1/149 (0%)
Frame = +2
Query: 77 MVKETKYYDILGVTPNVSEQELKKAYRTLALKYHPDKNPDAGDKFKEISHAFEVLADPKK 256
MVKET+YYDILGV P+ S +E+KKAYR LALKYHPDKNPD G+KFK IS A+EVL+DPKK
Sbjct: 1 MVKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKK 60
Query: 257 RQIYDDGGEHALKEGG-GDSGFHTPXXXXXXXXXXXXXARTRGSRKGKDVIHPLYVTLHE 433
R +YD GGE A+KEGG G F +P R R+GK+V+H L VTL +
Sbjct: 61 RDVYDQGGEQAIKEGGSGSPSFSSP--MDIFDMFFGGGGRMARERRGKNVVHQLSVTLED 118
Query: 434 LYKGNTRKLAIQKNVIRDKCNGRGGKEGA 520
LY G T+KLA+QKNVI +KC G GGK+G+
Sbjct: 119 LYNGVTKKLALQKNVICEKCEGVGGKKGS 147
>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HIRA interacting protein 4)
(Cell cycle progression restoration gene 3 protein)
(Dnj3)
Length = 412
Score = 157 bits (396), Expect = 2e-38
Identities = 80/152 (52%), Positives = 103/152 (67%), Gaps = 5/152 (3%)
Frame = +2
Query: 80 VKETKYYDILGVTPNVSEQELKKAYRTLALKYHPDKNPDAGDKFKEISHAFEVLADPKKR 259
V +TK YDILGV P SE ELKKAYR LA +YHPDKNP+AGDKFKEIS A+EVL++P+KR
Sbjct: 4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63
Query: 260 QIYDDGGEHALKEGGGDSG----FHTPXXXXXXXXXXXXXARTR-GSRKGKDVIHPLYVT 424
++YD GE L+EG G G + +R+R G R+G+D++HPL V+
Sbjct: 64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVS 123
Query: 425 LHELYKGNTRKLAIQKNVIRDKCNGRGGKEGA 520
L +LY G T KL + KNV+ C+G+GGK GA
Sbjct: 124 LEDLYNGKTTKLQLSKNVLCSACSGQGGKSGA 155
>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3)
Length = 412
Score = 157 bits (396), Expect = 2e-38
Identities = 80/152 (52%), Positives = 103/152 (67%), Gaps = 5/152 (3%)
Frame = +2
Query: 80 VKETKYYDILGVTPNVSEQELKKAYRTLALKYHPDKNPDAGDKFKEISHAFEVLADPKKR 259
V +TK YDILGV P SE ELKKAYR LA +YHPDKNP+AGDKFKEIS A+EVL++P+KR
Sbjct: 4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63
Query: 260 QIYDDGGEHALKEGGGDSG----FHTPXXXXXXXXXXXXXARTR-GSRKGKDVIHPLYVT 424
++YD GE L+EG G G + +R+R G R+G+D++HPL V+
Sbjct: 64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVS 123
Query: 425 LHELYKGNTRKLAIQKNVIRDKCNGRGGKEGA 520
L +LY G T KL + KNV+ C+G+GGK GA
Sbjct: 124 LEDLYNGKTTKLQLSKNVLCSACSGQGGKSGA 155
>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2)
Length = 412
Score = 157 bits (396), Expect = 2e-38
Identities = 80/152 (52%), Positives = 103/152 (67%), Gaps = 5/152 (3%)
Frame = +2
Query: 80 VKETKYYDILGVTPNVSEQELKKAYRTLALKYHPDKNPDAGDKFKEISHAFEVLADPKKR 259
V +TK YDILGV P SE ELKKAYR LA +YHPDKNP+AGDKFKEIS A+EVL++P+KR
Sbjct: 4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63
Query: 260 QIYDDGGEHALKEGGGDSG----FHTPXXXXXXXXXXXXXARTR-GSRKGKDVIHPLYVT 424
++YD GE L+EG G G + +R+R G R+G+D++HPL V+
Sbjct: 64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVS 123
Query: 425 LHELYKGNTRKLAIQKNVIRDKCNGRGGKEGA 520
L +LY G T KL + KNV+ C+G+GGK GA
Sbjct: 124 LEDLYNGKTTKLQLSKNVLCSACSGQGGKSGA 155
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
Length = 413
Score = 149 bits (375), Expect = 5e-36
Identities = 77/154 (50%), Positives = 100/154 (64%), Gaps = 5/154 (3%)
Frame = +2
Query: 74 KMVKETKYYDILGVTPNVSEQELKKAYRTLALKYHPDKNPDAGDKFKEISHAFEVLADPK 253
K TKYY+ILGV+ N S+ +LKKAYR A+K HPDK D +KFKE++ A+EVL+DP+
Sbjct: 6 KKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPE 64
Query: 254 KRQIYDDGGEHALKEGGGDSGFHTPXXXXXXXXXXXXX-----ARTRGSRKGKDVIHPLY 418
KR+IYD GE ALKEG G G H P +R R R+G+DVIHPL
Sbjct: 65 KREIYDQYGEDALKEGMGGGGGHDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVIHPLK 124
Query: 419 VTLHELYKGNTRKLAIQKNVIRDKCNGRGGKEGA 520
V+L +LY G ++KL++ +NVI KC G+G K GA
Sbjct: 125 VSLEDLYNGTSKKLSLSRNVICSKCKGKGSKSGA 158
>sp|P25491|MAS5_YEAST Mitochondrial protein import protein MAS5 (Protein YDJ1)
Length = 409
Score = 147 bits (372), Expect = 1e-35
Identities = 77/155 (49%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Frame = +2
Query: 77 MVKETKYYDILGVTPNVSEQELKKAYRTLALKYHPDKNP--DAGDKFKEISHAFEVLADP 250
MVKETK+YDILGV ++ E+KKAYR ALKYHPDKNP +A +KFKE S A+E+L+DP
Sbjct: 1 MVKETKFYDILGVPVTATDVEIKKAYRKCALKYHPDKNPSEEAAEKFKEASAAYEILSDP 60
Query: 251 KKRQIYDDGGEHALKEGGG-----DSGFHTPXXXXXXXXXXXXXARTRGSRKGKDVIHPL 415
+KR IYD GE L GG GF R RG ++GKD+ H +
Sbjct: 61 EKRDIYDQFGEDGLSGAGGAGGFPGGGFGFGDDIFSQFFGAGGAQRPRGPQRGKDIKHEI 120
Query: 416 YVTLHELYKGNTRKLAIQKNVIRDKCNGRGGKEGA 520
+L ELYKG T KLA+ K ++ +C GRGGK+GA
Sbjct: 121 SASLEELYKGRTAKLALNKQILCKECEGRGGKKGA 155
>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1
Length = 417
Score = 145 bits (367), Expect = 4e-35
Identities = 75/155 (48%), Positives = 101/155 (65%), Gaps = 6/155 (3%)
Frame = +2
Query: 74 KMVKETKYYDILGVTPNVSEQELKKAYRTLALKYHPDKNPDAGDKFKEISHAFEVLADPK 253
K T+YY+ILGV + S ++LKKAY+ A+K HPDK D +KFKE++HA+EVL+DP+
Sbjct: 7 KKSDSTRYYEILGVPKDASPEDLKKAYKKAAIKNHPDKGGDP-EKFKELAHAYEVLSDPE 65
Query: 254 KRQIYDDGGEHALKEG-GGDSGFHTPXXXXXXXXXXXXX-----ARTRGSRKGKDVIHPL 415
KR+IYD GE ALKEG GG G H P +R R R+G+DV+HPL
Sbjct: 66 KREIYDQYGEDALKEGMGGGGGMHDPFDIFQSFFGGSPFGGVGSSRGRRQRRGEDVVHPL 125
Query: 416 YVTLHELYKGNTRKLAIQKNVIRDKCNGRGGKEGA 520
V+L +L+ G T+KL++ +NVI KC G+G K GA
Sbjct: 126 KVSLEDLFTGTTKKLSLSRNVICSKCTGKGSKSGA 160
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,958,754
Number of Sequences: 369166
Number of extensions: 1093974
Number of successful extensions: 3782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3302
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)