Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_M14
(450 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA lig... 138 5e-33
sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA lig... 138 6e-33
sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA lig... 132 3e-31
sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA lig... 132 4e-31
sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA lig... 130 1e-30
sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Ly... 129 4e-30
sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA lig... 124 7e-29
sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA lig... 121 6e-28
sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase (Lysine--tRNA lig... 110 1e-24
sp|Q4JCI5|SYK_SULAC Lysyl-tRNA synthetase (Lysine--tRNA lig... 110 1e-24
>sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 602
Score = 138 bits (348), Expect = 5e-33
Identities = 65/100 (65%), Positives = 82/100 (82%), Gaps = 3/100 (3%)
Frame = +1
Query: 1 MYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITV 180
+Y+RIAPEL+LKEL++GG++RV+EIGKQFRNE +DLTHNPEFTTCEFYMA+ADY DLI +
Sbjct: 321 LYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDLIEL 380
Query: 181 TEDLLSNLVKELFGDYIVKYNRDG---KTYEIDFDPHTRE 291
TE +LS +VKEL G Y +KY+ +G EIDF P R+
Sbjct: 381 TETMLSGMVKELTGGYKIKYHANGVEKPPIEIDFTPPFRK 420
>sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 626
Score = 138 bits (347), Expect = 6e-33
Identities = 66/99 (66%), Positives = 80/99 (80%), Gaps = 3/99 (3%)
Frame = +1
Query: 1 MYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITV 180
+Y+RIAPEL+LK+LI+GG+ RV+EIGKQFRNE +DLTHNPEFTTCEFYMAFADY DL+ +
Sbjct: 330 LYMRIAPELYLKQLIVGGLERVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMEM 389
Query: 181 TEDLLSNLVKELFGDYIVKYNRDG---KTYEIDFDPHTR 288
TE +LS +VKEL G Y +KYN +G EIDF P R
Sbjct: 390 TEVMLSGMVKELTGGYKIKYNANGYDKDPIEIDFTPPFR 428
>sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 132 bits (333), Expect = 3e-31
Identities = 60/99 (60%), Positives = 79/99 (79%), Gaps = 3/99 (3%)
Frame = +1
Query: 1 MYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITV 180
+Y+RIAPEL+ K L++GG++RV+EIG+QFRNE +DLTHNPEFTTCEFYMA+ADY DL+ +
Sbjct: 294 LYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEI 353
Query: 181 TEDLLSNLVKELFGDYIVKYNRD---GKTYEIDFDPHTR 288
TE +LS +VK + G Y + Y+ D G+ YEIDF P R
Sbjct: 354 TEKMLSGMVKSITGSYKITYHPDGPEGEAYEIDFTPPFR 392
>sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 595
Score = 132 bits (332), Expect = 4e-31
Identities = 59/99 (59%), Positives = 79/99 (79%), Gaps = 3/99 (3%)
Frame = +1
Query: 1 MYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITV 180
+Y+RIAPEL+ K L++GG++RV+EIG+QFRNE +DLTHNPEFTTCEFYMA+ADY DL+ +
Sbjct: 292 LYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEI 351
Query: 181 TEDLLSNLVKELFGDYIVKYNRD---GKTYEIDFDPHTR 288
TE +LS +VK + G Y + Y+ D G+ YE+DF P R
Sbjct: 352 TEKMLSGMVKSITGSYKITYHPDGPEGQAYEVDFTPPFR 390
>sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 130 bits (327), Expect = 1e-30
Identities = 58/99 (58%), Positives = 79/99 (79%), Gaps = 3/99 (3%)
Frame = +1
Query: 1 MYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITV 180
+Y+RIAPEL+ K L++GG++RV+EIG+QFRNE +DLTHNPEFTTCEFYMA+ADY DL+ +
Sbjct: 294 LYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEI 353
Query: 181 TEDLLSNLVKELFGDYIVKYNRD---GKTYEIDFDPHTR 288
TE ++S +VK + G Y V Y+ D G+ Y++DF P R
Sbjct: 354 TEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFR 392
>sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Lysine--tRNA ligase) (LysRS)
Length = 591
Score = 129 bits (323), Expect = 4e-30
Identities = 57/95 (60%), Positives = 78/95 (82%), Gaps = 4/95 (4%)
Frame = +1
Query: 1 MYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITV 180
MY+RIAPELFLK+L++GG++RV+EIG+QFRNE +D+THNPEFTTCEFY A+AD +DL+ +
Sbjct: 297 MYMRIAPELFLKQLVVGGLDRVYEIGRQFRNEGIDMTHNPEFTTCEFYQAYADVYDLMDM 356
Query: 181 TEDLLSNLVKELFGDYIVKYNRD----GKTYEIDF 273
TE + S +VKE+ G YI+KY+ D K E++F
Sbjct: 357 TELMFSEMVKEITGSYIIKYHPDPADPAKELELNF 391
>sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 572
Score = 124 bits (312), Expect = 7e-29
Identities = 55/97 (56%), Positives = 78/97 (80%), Gaps = 4/97 (4%)
Frame = +1
Query: 1 MYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITV 180
++LR+APEL+ K L++GG++RV+E+G+ FRNE +DLTHNPEFTTCEFYMA+ADY D+I +
Sbjct: 273 LFLRVAPELYHKMLVVGGIDRVYEVGRLFRNEGIDLTHNPEFTTCEFYMAYADYEDVIQL 332
Query: 181 TEDLLSNLVKELFGDYIVKYNRDG----KTYEIDFDP 279
TEDLLS++V + G Y ++Y+ +G YE+DF P
Sbjct: 333 TEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTP 369
Score = 32.0 bits (71), Expect = 0.65
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +3
Query: 270 F*PPYQRIDMMTGL-EKLKMNCPSY*LVLKIS---FI**ICADNNVEWSAPRTTGSFI 431
F PP++R+ M GL EKL P + +C DNNV+ SAPRTT +
Sbjct: 367 FTPPFKRVHMYDGLAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARLL 424
>sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 588
Score = 121 bits (304), Expect = 6e-28
Identities = 58/118 (49%), Positives = 85/118 (72%), Gaps = 3/118 (2%)
Frame = +1
Query: 1 MYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITV 180
+ +R++PEL+LK+L++GG +RV+E+GK FRNE +DLTH+PEFT CE YMA+ADY DL+ +
Sbjct: 308 LLIRVSPELYLKKLVVGGFDRVYELGKHFRNEGMDLTHSPEFTMCELYMAYADYNDLMDL 367
Query: 181 TEDLLSNLVKELFGDYIVKYNRDG---KTYEIDFDPHTRESI**PVLRSLK*IALPTD 345
TE LLS +VK+L G Y ++Y+ +G + EIDF P R+ L + I++P D
Sbjct: 368 TEQLLSGMVKDLTGSYKIRYHANGLDNEPIEIDFTPPFRKIDMLSELEKVANISIPRD 425
>sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 110 bits (276), Expect = 1e-24
Identities = 55/93 (59%), Positives = 66/93 (70%)
Frame = +1
Query: 1 MYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITV 180
+YLRIAPEL+LK LI+GG RV+EIGK FRNESVD THNPEFT EFY A+ DY DLI
Sbjct: 320 LYLRIAPELYLKRLIVGGFPRVYEIGKNFRNESVDRTHNPEFTMVEFYAAYWDYHDLIKF 379
Query: 181 TEDLLSNLVKELFGDYIVKYNRDGKTYEIDFDP 279
TED+ L+++ G VKY +E+DF P
Sbjct: 380 TEDMFVYLLEKTLGTLKVKYGE----WELDFSP 408
>sp|Q4JCI5|SYK_SULAC Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 500
Score = 110 bits (275), Expect = 1e-24
Identities = 50/90 (55%), Positives = 68/90 (75%)
Frame = +1
Query: 4 YLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVT 183
YLRI+ EL+LK I+GG N+VFEIGK FRNE +D+THNPEFT E Y A+ADY D++ +T
Sbjct: 224 YLRISLELYLKRYIVGGFNKVFEIGKVFRNEDIDVTHNPEFTLLELYWAYADYNDIMRLT 283
Query: 184 EDLLSNLVKELFGDYIVKYNRDGKTYEIDF 273
E++L ++VK + D +KY+ GK Y I+F
Sbjct: 284 EEMLQDVVKNINNDSKIKYSIGGKEYTIEF 313
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,169,134
Number of Sequences: 369166
Number of extensions: 1018385
Number of successful extensions: 3195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3181
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)