Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_M12
(851 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44248|RL5_ANOGA 60S ribosomal protein L5 204 3e-52
sp|O65353|RL5_HELAN 60S ribosomal protein L5 201 2e-51
sp|P09895|RL5_RAT 60S ribosomal protein L5 201 3e-51
sp|Q26481|RL5_STYCL 60S ribosomal protein L5 201 3e-51
sp|P47962|RL5_MOUSE 60S ribosomal protein L5 200 4e-51
sp|P46777|RL5_HUMAN 60S ribosomal protein L5 200 5e-51
sp|O76190|RL5_BOMMO 60S ribosomal protein L5 200 5e-51
sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A 199 1e-50
sp|Q4R5M0|RL5_MACFA 60S ribosomal protein L5 198 1e-50
sp|P22451|RL5_CHICK 60S ribosomal protein L5 198 2e-50
>sp|O44248|RL5_ANOGA 60S ribosomal protein L5
Length = 327
Score = 204 bits (519), Expect = 3e-52
Identities = 105/192 (54%), Positives = 126/192 (65%), Gaps = 1/192 (0%)
Frame = +1
Query: 1 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 180
RRREGKTDYYARKRLI+QDKNKYNTPK+RL+VR +NRDI CQI Y RI+GD+++ +AYSH
Sbjct: 22 RRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDITCQIAYRRIEGDRIVCAAYSH 81
Query: 181 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 357
ELPRYG+K +D Y G TDV G+ +E +DE
Sbjct: 82 ELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAA 141
Query: 358 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHQG*NLW 537
F LD GL RT+TG+ VFGAMKGAVDGGLNIPHS KRFPGYS E +NA++H+
Sbjct: 142 FRCYLDVGLARTTTGSRVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFG 201
Query: 538 *ACWRFMSVLEE 573
+M LEE
Sbjct: 202 LHVANYMRTLEE 213
>sp|O65353|RL5_HELAN 60S ribosomal protein L5
Length = 297
Score = 201 bits (512), Expect = 2e-51
Identities = 97/175 (55%), Positives = 126/175 (72%), Gaps = 1/175 (0%)
Frame = +1
Query: 1 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 180
RRREGKTDY+ARKRLI QDKNKYNTPKYRLVVRF+NRDI CQ+ Y+RI+GDK+L +AY+H
Sbjct: 22 RRREGKTDYFARKRLIAQDKNKYNTPKYRLVVRFSNRDITCQVAYSRIEGDKILCAAYAH 81
Query: 181 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 357
ELP+YG+K +D+ Y+G+T+V G+ +++ +++
Sbjct: 82 ELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGA 141
Query: 358 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHQ 522
F LD GL+RT+TGA VFGAMKGAVDGGLNI HS KRFPG+ E ++NAD+H+
Sbjct: 142 FRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHR 196
>sp|P09895|RL5_RAT 60S ribosomal protein L5
Length = 297
Score = 201 bits (510), Expect = 3e-51
Identities = 98/175 (56%), Positives = 122/175 (69%), Gaps = 1/175 (0%)
Frame = +1
Query: 1 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 180
RRREGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+H
Sbjct: 22 RRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAH 81
Query: 181 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 357
ELP+YG+K MD+ Y G +V+G ++E ID +
Sbjct: 82 ELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDEYNVESIDGQPGA 141
Query: 358 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHQ 522
FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+
Sbjct: 142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHR 196
>sp|Q26481|RL5_STYCL 60S ribosomal protein L5
Length = 295
Score = 201 bits (510), Expect = 3e-51
Identities = 101/192 (52%), Positives = 127/192 (66%), Gaps = 1/192 (0%)
Frame = +1
Query: 1 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 180
RRR+GKTDY+ARKRL+ QDKNKYNTPKYR++VRFTN+DI+CQI YARI+GD V+ +AY+H
Sbjct: 22 RRRQGKTDYFARKRLVVQDKNKYNTPKYRMIVRFTNKDIVCQIAYARIEGDVVICAAYAH 81
Query: 181 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 357
ELPRYG+K +DE Y G T++DG +E +D +
Sbjct: 82 ELPRYGVKVGLTNYAAAYCTGLLLSRRLLNKFGLDEIYEGQTEIDGDEFYVEDVDGKPGA 141
Query: 358 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHQG*NLW 537
F A LD GL RT+TGA VFGAMKGA DGGL+IPHS KRFPGY E ++A++H+
Sbjct: 142 FRAFLDVGLARTTTGAKVFGAMKGAADGGLDIPHSTKRFPGYDDESGDFSAEVHRSHIFG 201
Query: 538 *ACWRFMSVLEE 573
+M LEE
Sbjct: 202 GHVSNYMKELEE 213
>sp|P47962|RL5_MOUSE 60S ribosomal protein L5
Length = 297
Score = 200 bits (509), Expect = 4e-51
Identities = 98/175 (56%), Positives = 122/175 (69%), Gaps = 1/175 (0%)
Frame = +1
Query: 1 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 180
RRREGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+H
Sbjct: 22 RRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAH 81
Query: 181 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 357
ELP+YG+K MD+ Y G +V+G ++E ID +
Sbjct: 82 ELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGA 141
Query: 358 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHQ 522
FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+
Sbjct: 142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHR 196
>sp|P46777|RL5_HUMAN 60S ribosomal protein L5
Length = 297
Score = 200 bits (508), Expect = 5e-51
Identities = 98/175 (56%), Positives = 121/175 (69%), Gaps = 1/175 (0%)
Frame = +1
Query: 1 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 180
RRREGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+H
Sbjct: 22 RRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAH 81
Query: 181 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 357
ELP+YG+K MD+ Y G +V G ++E ID +
Sbjct: 82 ELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGA 141
Query: 358 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHQ 522
FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+
Sbjct: 142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHR 196
>sp|O76190|RL5_BOMMO 60S ribosomal protein L5
Length = 299
Score = 200 bits (508), Expect = 5e-51
Identities = 96/175 (54%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Frame = +1
Query: 1 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 180
RRREGKTDYYARKRL+ QDKNKYNTPKYRL+VR +N+D+ CQ+ Y+RI+GD ++ +AYSH
Sbjct: 22 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSH 81
Query: 181 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 357
ELPRYG+K +D Y G TDV G ++E +D
Sbjct: 82 ELPRYGVKVGLTNYAAAYSTGLLLARRLLQRLGLDTLYTGTTDVTGDEYNVEPVDNGPGA 141
Query: 358 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHQ 522
F LD GL RT+TG VFGAMKGAVDGGLN+PHS KRFPGY E K+NA++H+
Sbjct: 142 FRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHR 196
>sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A
Length = 296
Score = 199 bits (505), Expect = 1e-50
Identities = 97/175 (55%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
Frame = +1
Query: 1 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 180
RRREGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+H
Sbjct: 22 RRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAH 81
Query: 181 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 357
ELP+YG+K +D+ Y G +V G ++E ID E
Sbjct: 82 ELPKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGA 141
Query: 358 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHQ 522
FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++N ++H+
Sbjct: 142 FTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHR 196
>sp|Q4R5M0|RL5_MACFA 60S ribosomal protein L5
Length = 297
Score = 198 bits (504), Expect = 1e-50
Identities = 97/175 (55%), Positives = 121/175 (69%), Gaps = 1/175 (0%)
Frame = +1
Query: 1 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 180
RRREGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+H
Sbjct: 22 RRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAH 81
Query: 181 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 357
+LP+YG+K MD+ Y G +V G ++E ID +
Sbjct: 82 KLPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGA 141
Query: 358 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHQ 522
FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+
Sbjct: 142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHR 196
>sp|P22451|RL5_CHICK 60S ribosomal protein L5
Length = 297
Score = 198 bits (503), Expect = 2e-50
Identities = 96/175 (54%), Positives = 121/175 (69%), Gaps = 1/175 (0%)
Frame = +1
Query: 1 RRREGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSH 180
RRREGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+H
Sbjct: 22 RRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAH 81
Query: 181 ELPRYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRP 357
ELP+YG+K +D+ Y G +V G ++E +D +
Sbjct: 82 ELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGA 141
Query: 358 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHQ 522
FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+
Sbjct: 142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHR 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,176,083
Number of Sequences: 369166
Number of extensions: 1955694
Number of successful extensions: 5310
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5254
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)