Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_M08
(713 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenas... 246 6e-65
sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenas... 243 3e-64
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 242 6e-64
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 241 2e-63
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 240 2e-63
sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenas... 239 4e-63
sp|P17330|G3P3_CAEEL Glyceraldehyde-3-phosphate dehydrogena... 239 5e-63
sp|P17329|G3P2_CAEEL Glyceraldehyde-3-phosphate dehydrogena... 239 5e-63
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 238 9e-63
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 238 9e-63
>sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Major larval
surface antigen) (P-37)
Length = 338
Score = 246 bits (627), Expect = 6e-65
Identities = 134/220 (60%), Positives = 157/220 (71%), Gaps = 4/220 (1%)
Frame = +3
Query: 6 VDGHAMSVYNKRNPDEIPWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSAD 185
V+G +SV+ +R+P IPWD D YVVESTGVFTTI+KA AH KNNRAKKV+ISAPSAD
Sbjct: 69 VNGKLISVHCERDPANIPWDKDGAEYVVESTGVFTTIDKAQAHIKNNRAKKVIISAPSAD 128
Query: 186 APMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKT 365
APMFV+GVN Y+ S+S+VSNASCTTNCLAPLAKV++D F I EGLMTT+H++TATQK
Sbjct: 129 APMFVVGVNENSYEKSMSVVSNASCTTNCLAPLAKVIHDKFEIVEGLMTTVHSFTATQKV 188
Query: 366 VDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFPCFQFPDVSV---- 533
VDGPSSKLWRDGRGA QNIIP IP LNGK+TGMAF PDVSV
Sbjct: 189 VDGPSSKLWRDGRGAMQNIIPASTGAAKAVGKVIPALNGKLTGMAFR-VPTPDVSVVDLT 247
Query: 534 CRF*PAN*KKQLNMTKFKAAIKARI*NYNEREFLAYTEEE 653
CR K + + KAA+KA + + L YTE+E
Sbjct: 248 CRL-----GKGASYEEIKAAVKAAA-SGPLKGILEYTEDE 281
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 243 bits (621), Expect = 3e-64
Identities = 133/221 (60%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Frame = +3
Query: 3 VVDGHAMSVYNKRNPDEIPWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSA 182
V++GHA++++ +R+P I W YVVESTGVFTT+EKA AH K AK+V+ISAPSA
Sbjct: 66 VINGHAITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSA 124
Query: 183 DAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQK 362
DAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQK
Sbjct: 125 DAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQK 184
Query: 363 TVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFPCFQFPDVSV--- 533
TVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAF P+VSV
Sbjct: 185 TVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFR-VPTPNVSVVDL 243
Query: 534 -CRF*PAN*KKQLNMTKFKAAIKARI*NYNEREFLAYTEEE 653
CR +K K +KA + + L YTE++
Sbjct: 244 TCRL-----EKPAKYDDIKRVVKAAA-DGPLKGILGYTEDQ 278
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 242 bits (618), Expect = 6e-64
Identities = 133/221 (60%), Positives = 157/221 (71%), Gaps = 4/221 (1%)
Frame = +3
Query: 3 VVDGHAMSVYNKRNPDEIPWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSA 182
V++G+A++++ +R+P I W YVVESTGVFTT+EKA AH K AK+V+ISAPSA
Sbjct: 66 VINGNAITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSA 124
Query: 183 DAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQK 362
DAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQK
Sbjct: 125 DAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQK 184
Query: 363 TVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFPCFQFPDVSV--- 533
TVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAF P+VSV
Sbjct: 185 TVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFR-VPTPNVSVVDL 243
Query: 534 -CRF*PAN*KKQLNMTKFKAAIKARI*NYNEREFLAYTEEE 653
CR +K K +KA + + LAYTE++
Sbjct: 244 TCRL-----EKPAKYDDIKRVVKAAA-DGPLKGILAYTEDQ 278
Score = 30.0 bits (66), Expect = 6.4
Identities = 24/57 (42%), Positives = 29/57 (50%)
Frame = +2
Query: 542 LTCKLKKAAKYDEI*SRY*STHLKLQ*KGISCIH*GRKWSVKTFKGDHNSSIFDAKA 712
LTC+L+K AKYD+I R KGI + S F GD +SS FDA A
Sbjct: 243 LTCRLEKPAKYDDI-KRVVKAAADGPLKGILAYTEDQVVSCD-FNGDSHSSTFDAGA 297
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 241 bits (614), Expect = 2e-63
Identities = 132/221 (59%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Frame = +3
Query: 3 VVDGHAMSVYNKRNPDEIPWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSA 182
V++G+A++++ +R+P I W YVVESTGVFTT+EKA AH K AK+V+ISAPSA
Sbjct: 66 VINGNAITIFQERDPSNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSA 124
Query: 183 DAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQK 362
DAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQK
Sbjct: 125 DAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQK 184
Query: 363 TVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFPCFQFPDVSV--- 533
TVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAF P+VSV
Sbjct: 185 TVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFR-VPTPNVSVVDL 243
Query: 534 -CRF*PAN*KKQLNMTKFKAAIKARI*NYNEREFLAYTEEE 653
CR +K K +KA + L YTE++
Sbjct: 244 TCRL-----EKPAKYDDIKRVVKAAA-EGPLKGILGYTEDQ 278
Score = 29.6 bits (65), Expect = 8.4
Identities = 24/57 (42%), Positives = 30/57 (52%)
Frame = +2
Query: 542 LTCKLKKAAKYDEI*SRY*STHLKLQ*KGISCIH*GRKWSVKTFKGDHNSSIFDAKA 712
LTC+L+K AKYD+I R + KGI + S F GD +SS FDA A
Sbjct: 243 LTCRLEKPAKYDDI-KRVVKAAAEGPLKGILGYTEDQVVSCD-FNGDSHSSTFDAGA 297
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 240 bits (613), Expect = 2e-63
Identities = 123/177 (69%), Positives = 139/177 (78%)
Frame = +3
Query: 3 VVDGHAMSVYNKRNPDEIPWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSA 182
V++G A++++ +R+P I W YVVESTGVFTT+EKA AH K AK+V+ISAPSA
Sbjct: 66 VINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSA 124
Query: 183 DAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQK 362
DAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQK
Sbjct: 125 DAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQK 184
Query: 363 TVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFPCFQFPDVSV 533
TVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAF P+VSV
Sbjct: 185 TVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFR-VPTPNVSV 240
>sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 239 bits (611), Expect = 4e-63
Identities = 122/177 (68%), Positives = 139/177 (78%)
Frame = +3
Query: 3 VVDGHAMSVYNKRNPDEIPWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSA 182
V++G ++S++ +R+P I W YVVESTGVFTT+EKA AH K AK+V+ISAPSA
Sbjct: 66 VINGKSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSA 124
Query: 183 DAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQK 362
DAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQK
Sbjct: 125 DAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQK 184
Query: 363 TVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFPCFQFPDVSV 533
TVDGPS K+WRDGRGAAQNIIP IPELNGK+TGMAF P+VSV
Sbjct: 185 TVDGPSGKMWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFR-VPTPNVSV 240
>sp|P17330|G3P3_CAEEL Glyceraldehyde-3-phosphate dehydrogenase 3 (GAPDH-3)
Length = 341
Score = 239 bits (610), Expect = 5e-63
Identities = 134/214 (62%), Positives = 152/214 (71%), Gaps = 1/214 (0%)
Frame = +3
Query: 15 HAMSVYNKRNPDEIPWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPM 194
H + VYN R+P EI W YVVESTGVFTTIEKA+AH K AKKV+ISAPSADAPM
Sbjct: 77 HKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGG-AKKVIISAPSADAPM 135
Query: 195 FVMGVNHEKYDPSLS-IVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVD 371
FV+GVNHEKYD + I+SNASCTTNCLAPLAKV+ND+FGI EGLMTT+HA TATQKTVD
Sbjct: 136 FVVGVNHEKYDHANDHIISNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVD 195
Query: 372 GPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFPCFQFPDVSVCRF*PA 551
GPS KLWRDGRGA QNIIP IPELNGK+TGMAF PDVSV A
Sbjct: 196 GPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKLTGMAFR-VPTPDVSVVDL-TA 253
Query: 552 N*KKQLNMTKFKAAIKARI*NYNEREFLAYTEEE 653
+K ++ K IKA + + LAYTE++
Sbjct: 254 RLEKPASLDDIKKVIKAAA-DGPMKGILAYTEDQ 286
>sp|P17329|G3P2_CAEEL Glyceraldehyde-3-phosphate dehydrogenase 2 (GAPDH-2)
Length = 341
Score = 239 bits (610), Expect = 5e-63
Identities = 134/214 (62%), Positives = 152/214 (71%), Gaps = 1/214 (0%)
Frame = +3
Query: 15 HAMSVYNKRNPDEIPWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPM 194
H + VYN R+P EI W YVVESTGVFTTIEKA+AH K AKKV+ISAPSADAPM
Sbjct: 77 HKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGG-AKKVIISAPSADAPM 135
Query: 195 FVMGVNHEKYDPSLS-IVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVD 371
FV+GVNHEKYD + I+SNASCTTNCLAPLAKV+ND+FGI EGLMTT+HA TATQKTVD
Sbjct: 136 FVVGVNHEKYDHANDHIISNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVD 195
Query: 372 GPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFPCFQFPDVSVCRF*PA 551
GPS KLWRDGRGA QNIIP IPELNGK+TGMAF PDVSV A
Sbjct: 196 GPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKLTGMAFR-VPTPDVSVVDL-TA 253
Query: 552 N*KKQLNMTKFKAAIKARI*NYNEREFLAYTEEE 653
+K ++ K IKA + + LAYTE++
Sbjct: 254 RLEKPASLDDIKKVIKAAA-DGPMKGILAYTEDQ 286
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 238 bits (608), Expect = 9e-63
Identities = 122/177 (68%), Positives = 138/177 (77%)
Frame = +3
Query: 3 VVDGHAMSVYNKRNPDEIPWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSA 182
V++G A++++ +R+P I W YVVESTGVFTT+EKA AH K AK+V+ISAPS
Sbjct: 66 VINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSX 124
Query: 183 DAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQK 362
DAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQK
Sbjct: 125 DAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQK 184
Query: 363 TVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFPCFQFPDVSV 533
TVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAF P+VSV
Sbjct: 185 TVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFR-VPTPNVSV 240
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 238 bits (608), Expect = 9e-63
Identities = 122/177 (68%), Positives = 138/177 (77%)
Frame = +3
Query: 3 VVDGHAMSVYNKRNPDEIPWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSA 182
V++G ++++ +R+P I W YVVESTGVFTT+EKA AH K AK+V+ISAPSA
Sbjct: 66 VINGKPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSA 124
Query: 183 DAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQK 362
DAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQK
Sbjct: 125 DAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQK 184
Query: 363 TVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFPCFQFPDVSV 533
TVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAF P+VSV
Sbjct: 185 TVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFR-VPTPNVSV 240
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,264,962
Number of Sequences: 369166
Number of extensions: 1643459
Number of successful extensions: 4475
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4129
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)