Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_M02
(566 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O13290|DYHC_SCHPO Dynein heavy chain, cytosolic (DYHC) 37 0.026
sp|P36317|V109_FOWPV Virion release protein (Protein F12 ho... 30 4.2
sp|Q58511|CCA_METJA CCA-adding enzyme (tRNA nucleotidyltran... 30 5.5
sp|O55519|VP2_RDVO Minor outer capsid protein (P2 outer cap... 30 5.5
sp|P93280|CCMB_ARATH Putative cytochrome c biogenesis ccmB-... 30 5.5
sp|Q09178|JAK1_CYPCA Tyrosine-protein kinase Jak1 (Janus ki... 30 5.5
sp|Q9X0N9|G6PD_THEMA Glucose-6-phosphate 1-dehydrogenase (G... 29 7.1
sp|P23693|TNNI3_RAT Troponin I, cardiac muscle (Cardiac tro... 29 9.3
sp|P48787|TNNI3_MOUSE Troponin I, cardiac muscle (Cardiac t... 29 9.3
sp|P79124|SPL2A_BOVIN Short palate, lung and nasal epitheli... 29 9.3
>sp|O13290|DYHC_SCHPO Dynein heavy chain, cytosolic (DYHC)
Length = 4196
Score = 37.4 bits (85), Expect = 0.026
Identities = 29/91 (31%), Positives = 49/91 (53%)
Frame = -3
Query: 291 SLFGSSELVIKSVDLNNSSKNLTYEHTSQSLANWKT*SRNRRLAQELLRKYKLAVESFKS 112
+L S+E ++ + ++ KNL +H + LA ++ S NR++ EL+R+YKL+++SF S
Sbjct: 3666 TLCSSNENIVGTDEIVVLLKNLKEKHETIRLAYSESQSINRKV-DELIRRYKLSIKSFLS 3724
Query: 111 SEKNKLRKSTCFFSHIAIYKKQFRSFLYSFN 19
F H KK S+ +SFN
Sbjct: 3725 --------VVVVFQHFISLKK---SYSFSFN 3744
>sp|P36317|V109_FOWPV Virion release protein (Protein F12 homolog)
Length = 630
Score = 30.0 bits (66), Expect = 4.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 56 YMAIWEKKQVDFLNLFFSEDLKDSTASLYFRNNSCASRLF 175
Y+ W K+++F N F KDS Y NNS A R++
Sbjct: 333 YVKHWTGKKLNFKNFF----QKDSQLEKYINNNSVAERIY 368
>sp|Q58511|CCA_METJA CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA
adenylyl-/cytidylyl- transferase) (tRNA
CCA-pyrophosphorylase) (tRNA-NT)
Length = 449
Score = 29.6 bits (65), Expect = 5.5
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -2
Query: 241 FLKKPNI*TYKPVAGKLEDIIEK*ATGAGIITKI 140
FLK P+I +K A KLE+I+E G +I KI
Sbjct: 271 FLKNPSIEFFKDYAKKLEEILENREHGYRLILKI 304
>sp|O55519|VP2_RDVO Minor outer capsid protein (P2 outer capsid protein)
Length = 1148
Score = 29.6 bits (65), Expect = 5.5
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Frame = +2
Query: 176 LDYVFQFASDWLVCSYVRFFEELFKSTDLITSSELPNNDNGSPDSLEQTSAPIENDVL-- 349
L Y+ + D L Y + F TD++TSS L N S +L + + NDV+
Sbjct: 324 LRYITECEVDTLRSVYDQTSSTSFSKTDVLTSSLLTMQSNIS--ALSAATPQLANDVITF 381
Query: 350 ----LMCLTAALDGINENLKECPLTLRHLFHNIQSEIESRHPNFVETKSDKTSDSCDTQG 517
L+ L L NE + + L + Q + P + KS S SCD+
Sbjct: 382 DSTDLLSLGTVLTVSNEFTADDTILSTSLAGHCQVDYSEGSP---QDKSMSISVSCDSSQ 438
Query: 518 L 520
L
Sbjct: 439 L 439
>sp|P93280|CCMB_ARATH Putative cytochrome c biogenesis ccmB-like mitochondrial protein
Length = 206
Score = 29.6 bits (65), Expect = 5.5
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 29 YKKLLNCFLYMA-IWEKKQVDFLN-LFFSEDLKDSTASLYFRNNSCASRLFLDYVFQFAS 202
++K C ++ IW FL+ LFF + +D T LY+ + C ++ L Q
Sbjct: 38 FEKDFLCHFHLGLIWISLLFSFLSALFFRNEKEDGTLELYYLSTYCLPKILL---LQLVG 94
Query: 203 DWLV 214
W++
Sbjct: 95 HWVI 98
>sp|Q09178|JAK1_CYPCA Tyrosine-protein kinase Jak1 (Janus kinase 1) (Jak-1)
Length = 1156
Score = 29.6 bits (65), Expect = 5.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 75 FSHIAIYKKQFRSFLYSFNSK 13
FSH+ +Y F++FL FNSK
Sbjct: 233 FSHVYVYNNVFKNFLNEFNSK 253
>sp|Q9X0N9|G6PD_THEMA Glucose-6-phosphate 1-dehydrogenase (G6PD)
Length = 496
Score = 29.3 bits (64), Expect = 7.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 50 FLYMAIWEKKQVDFLNLFFSEDLKDSTASLYFRNNSCASRLFLDYVFQ 193
F++ IW K VD + + +ED+ + YF N +F +++ Q
Sbjct: 201 FIFEEIWNNKFVDHVQITMAEDIGVEHRAGYFENVGLLRDIFQNHMLQ 248
>sp|P23693|TNNI3_RAT Troponin I, cardiac muscle (Cardiac troponin I)
Length = 211
Score = 28.9 bits (63), Expect = 9.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 212 QASRWQIGRHNREIGDWRRN 153
Q + I + NRE+GDWR+N
Sbjct: 176 QVKKEDIEKENREVGDWRKN 195
>sp|P48787|TNNI3_MOUSE Troponin I, cardiac muscle (Cardiac troponin I)
Length = 211
Score = 28.9 bits (63), Expect = 9.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 212 QASRWQIGRHNREIGDWRRN 153
Q + I + NRE+GDWR+N
Sbjct: 176 QVKKEDIEKENREVGDWRKN 195
>sp|P79124|SPL2A_BOVIN Short palate, lung and nasal epithelium carcinoma-associated
protein 2A precursor (Common salivary protein form a)
(BSP30a)
Length = 243
Score = 28.9 bits (63), Expect = 9.3
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +2
Query: 338 NDVLLMCLTAALDGINENLKECPLTLRHLFHNIQSEIESRHPNFVETKSDKTSDSCD 508
NDVL ++ G+ L T+ +F N+++E+ESR N V ++ +T +S +
Sbjct: 27 NDVLRRLIS----GLERGLGTFDSTIEIIFQNLKTELESRCLNDVVEETQQTENSLE 79
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,434,231
Number of Sequences: 369166
Number of extensions: 1176436
Number of successful extensions: 3756
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3755
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4127973360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)