Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_L07
(397 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 (Te... 47 2e-05
sp|Q99615|DNJC7_HUMAN DnaJ homolog subfamily C member 7 (Te... 47 2e-05
sp|P47265|DNAJ_MYCGE Chaperone protein dnaJ 43 3e-04
sp|P78004|DNAJ_MYCPN Chaperone protein dnaJ 40 0.002
sp|Q70WY6|DNAJ_FUSNP Chaperone protein dnaJ 38 0.006
sp|Q8RH03|DNAJ_FUSNN Chaperone protein dnaJ 38 0.006
sp|Q8EUM4|DNAJ_MYCPE Chaperone protein dnaJ 37 0.014
sp|O80684|DNJ72_ARATH Chaperone protein dnaJ 72 (AtJ72) (At... 36 0.032
sp|Q8Y0M0|HSCB_RALSO Co-chaperone protein hscB homolog 35 0.041
sp|P30725|DNAJ_CLOAB Chaperone protein dnaJ 35 0.054
>sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 (Tetratricopeptide repeat protein
2) (TPR repeat protein 2) (MDj11)
Length = 494
Score = 46.6 bits (109), Expect = 2e-05
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +1
Query: 1 RALLHHPDRHSHADEATRHAEEQKFKEVNTAYSVFVRP 114
RAL+HHPDRHS A + EE+KFKEV A+++ P
Sbjct: 404 RALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDP 441
Score = 29.3 bits (64), Expect = 3.0
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 104 LSDPCKRQMYDSGADIDE 157
LSDP K+ YDSG D+DE
Sbjct: 438 LSDPKKKTRYDSGQDLDE 455
>sp|Q99615|DNJC7_HUMAN DnaJ homolog subfamily C member 7 (Tetratricopeptide repeat protein
2) (TPR repeat protein 2)
Length = 494
Score = 46.6 bits (109), Expect = 2e-05
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +1
Query: 1 RALLHHPDRHSHADEATRHAEEQKFKEVNTAYSVFVRP 114
RAL+HHPDRHS A + EE+KFKEV A+++ P
Sbjct: 404 RALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDP 441
Score = 29.3 bits (64), Expect = 3.0
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 104 LSDPCKRQMYDSGADIDE 157
LSDP K+ YDSG D+DE
Sbjct: 438 LSDPKKKTRYDSGQDLDE 455
>sp|P47265|DNAJ_MYCGE Chaperone protein dnaJ
Length = 389
Score = 42.7 bits (99), Expect = 3e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +1
Query: 4 ALLHHPDRHSHADEATRHAEEQKFKEVNTAYSV 102
A+ +HPDRH +E T+ E+KFKEVN AY V
Sbjct: 31 AMQYHPDRHKAENETTQKQNEEKFKEVNEAYEV 63
>sp|P78004|DNAJ_MYCPN Chaperone protein dnaJ
Length = 390
Score = 40.0 bits (92), Expect = 0.002
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +1
Query: 4 ALLHHPDRHSHADEATRHAEEQKFKEVNTAYSV 102
A+ +HPDRH E + E+KFKEVN AY V
Sbjct: 31 AMQYHPDRHKGEGETVQKQNEEKFKEVNEAYEV 63
>sp|Q70WY6|DNAJ_FUSNP Chaperone protein dnaJ
Length = 394
Score = 38.1 bits (87), Expect = 0.006
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 4 ALLHHPDRHSHADEATRHAEEQKFKEVNTAYSV 102
A+ +HPD+ ++A +A + E+KFKE+N AY V
Sbjct: 29 AMKYHPDKFANATDAEKKDAEEKFKEINEAYQV 61
>sp|Q8RH03|DNAJ_FUSNN Chaperone protein dnaJ
Length = 392
Score = 38.1 bits (87), Expect = 0.006
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +1
Query: 4 ALLHHPDRHSHADEATRHAEEQKFKEVNTAYSV 102
A+ +HPD+ ++A +A + E+KFKE+N AY +
Sbjct: 29 AMKYHPDKFANASDAEKKDAEEKFKEINEAYQI 61
>sp|Q8EUM4|DNAJ_MYCPE Chaperone protein dnaJ
Length = 388
Score = 37.0 bits (84), Expect = 0.014
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +1
Query: 1 RALLHHPDRHSHADEATRHAEEQKFKEVNTAYSVFVRPLQEAN 129
+A+ +HPDR+ D E+KFKEVN AY V P + AN
Sbjct: 29 KAMQYHPDRNKEPDA------EEKFKEVNQAYEVLSDPDKRAN 65
>sp|O80684|DNJ72_ARATH Chaperone protein dnaJ 72 (AtJ72) (AtDjC72)
Length = 184
Score = 35.8 bits (81), Expect = 0.032
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 4 ALLHHPDRHSHADEATRHAEEQKFKEVNTAYSVFVRPLQEAN 129
A+ +HPD+H+ + E RH +FK V+ AY V L+ A+
Sbjct: 27 AIKYHPDKHAQSPEHVRHNATVRFKLVSEAYEVLNDDLKRAS 68
>sp|Q8Y0M0|HSCB_RALSO Co-chaperone protein hscB homolog
Length = 176
Score = 35.4 bits (80), Expect = 0.041
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 16 HPDRHSHADEATRHAEEQKFKEVNTAYSVFVRPLQEA 126
HPDRH+HA +A R Q N AY PL+ A
Sbjct: 37 HPDRHAHASDAERRVAMQWATRANEAYQTLRDPLKRA 73
>sp|P30725|DNAJ_CLOAB Chaperone protein dnaJ
Length = 374
Score = 35.0 bits (79), Expect = 0.054
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +1
Query: 4 ALLHHPDRHSHADEATRHAEEQKFKEVNTAYSVFVRPLQEAN 129
A+ +HPD++ EA E+KFKE+N AY V P ++AN
Sbjct: 29 AIKYHPDKNRGNKEA-----EEKFKEINEAYQVLSDPDKKAN 65
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,719,437
Number of Sequences: 369166
Number of extensions: 822315
Number of successful extensions: 2734
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2713
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)