Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_L05-2
(213 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51644|ARF4_XENLA ADP-ribosylation factor 4 130 1e-30
sp|Q5RCF1|ARF4_PONPY ADP-ribosylation factor 4 >gi|114123|s... 130 1e-30
sp|P61751|ARF4_RAT ADP-ribosylation factor 4 >gi|48428790|s... 130 1e-30
sp|P84083|ARF5_RAT ADP-ribosylation factor 5 >gi|51316989|s... 128 5e-30
sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1 128 5e-30
sp|P40945|ARF2_DROME ADP-ribosylation factor 2 (dARF II) 127 8e-30
sp|P49702|ARF5_CHICK ADP-ribosylation factor 5 127 8e-30
sp|P49076|ARF_MAIZE ADP-ribosylation factor 126 1e-29
sp|P51823|ARF_ORYSA ADP-ribosylation factor 126 1e-29
sp|P34728|ARF_CRYNE ADP-ribosylation factor 125 2e-29
>sp|P51644|ARF4_XENLA ADP-ribosylation factor 4
Length = 180
Score = 130 bits (326), Expect = 1e-30
Identities = 65/70 (92%), Positives = 67/70 (95%)
Frame = +3
Query: 3 LTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV*TVEYKNIS 182
LT+SSLF+RLFGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV TVEYKNI
Sbjct: 3 LTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIC 62
Query: 183 FTVWDVGGQD 212
FTVWDVGGQD
Sbjct: 63 FTVWDVGGQD 72
>sp|Q5RCF1|ARF4_PONPY ADP-ribosylation factor 4
sp|P18085|ARF4_HUMAN ADP-ribosylation factor 4
Length = 180
Score = 130 bits (326), Expect = 1e-30
Identities = 65/70 (92%), Positives = 67/70 (95%)
Frame = +3
Query: 3 LTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV*TVEYKNIS 182
LT+SSLF+RLFGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV TVEYKNI
Sbjct: 3 LTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIC 62
Query: 183 FTVWDVGGQD 212
FTVWDVGGQD
Sbjct: 63 FTVWDVGGQD 72
>sp|P61751|ARF4_RAT ADP-ribosylation factor 4
sp|P61750|ARF4_MOUSE ADP-ribosylation factor 4
Length = 180
Score = 130 bits (326), Expect = 1e-30
Identities = 65/70 (92%), Positives = 67/70 (95%)
Frame = +3
Query: 3 LTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV*TVEYKNIS 182
LT+SSLF+RLFGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV TVEYKNI
Sbjct: 3 LTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIC 62
Query: 183 FTVWDVGGQD 212
FTVWDVGGQD
Sbjct: 63 FTVWDVGGQD 72
>sp|P84083|ARF5_RAT ADP-ribosylation factor 5
sp|P84084|ARF5_MOUSE ADP-ribosylation factor 5
sp|P84085|ARF5_HUMAN ADP-ribosylation factor 5
Length = 180
Score = 128 bits (321), Expect = 5e-30
Identities = 63/70 (90%), Positives = 67/70 (95%)
Frame = +3
Query: 3 LTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV*TVEYKNIS 182
LT+S+LF+R+FGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV TVEYKNI
Sbjct: 3 LTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIC 62
Query: 183 FTVWDVGGQD 212
FTVWDVGGQD
Sbjct: 63 FTVWDVGGQD 72
>sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1
Length = 197
Score = 128 bits (321), Expect = 5e-30
Identities = 64/70 (91%), Positives = 66/70 (94%)
Frame = +3
Query: 3 LTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV*TVEYKNIS 182
LT+S LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV TVEYKNIS
Sbjct: 3 LTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 183 FTVWDVGGQD 212
FTVWDVGGQD
Sbjct: 63 FTVWDVGGQD 72
>sp|P40945|ARF2_DROME ADP-ribosylation factor 2 (dARF II)
Length = 180
Score = 127 bits (319), Expect = 8e-30
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 3 LTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV*TVEYKNIS 182
LT+SSL RLFGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV TVEYKNI
Sbjct: 3 LTISSLLTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIC 62
Query: 183 FTVWDVGGQD 212
FTVWDVGGQD
Sbjct: 63 FTVWDVGGQD 72
>sp|P49702|ARF5_CHICK ADP-ribosylation factor 5
Length = 180
Score = 127 bits (319), Expect = 8e-30
Identities = 62/70 (88%), Positives = 67/70 (95%)
Frame = +3
Query: 3 LTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV*TVEYKNIS 182
LT+S++F+R+FGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV TVEYKNI
Sbjct: 3 LTVSAIFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIC 62
Query: 183 FTVWDVGGQD 212
FTVWDVGGQD
Sbjct: 63 FTVWDVGGQD 72
>sp|P49076|ARF_MAIZE ADP-ribosylation factor
Length = 181
Score = 126 bits (317), Expect = 1e-29
Identities = 63/70 (90%), Positives = 65/70 (92%)
Frame = +3
Query: 3 LTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV*TVEYKNIS 182
LT + LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV TVEYKNIS
Sbjct: 3 LTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 183 FTVWDVGGQD 212
FTVWDVGGQD
Sbjct: 63 FTVWDVGGQD 72
>sp|P51823|ARF_ORYSA ADP-ribosylation factor
Length = 181
Score = 126 bits (317), Expect = 1e-29
Identities = 63/70 (90%), Positives = 65/70 (92%)
Frame = +3
Query: 3 LTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV*TVEYKNIS 182
LT + LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV TVEYKNIS
Sbjct: 3 LTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 183 FTVWDVGGQD 212
FTVWDVGGQD
Sbjct: 63 FTVWDVGGQD 72
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 125 bits (315), Expect = 2e-29
Identities = 63/70 (90%), Positives = 65/70 (92%)
Frame = +3
Query: 3 LTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV*TVEYKNIS 182
L++S L N LFGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV TVEYKNIS
Sbjct: 3 LSVSKLLNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 183 FTVWDVGGQD 212
FTVWDVGGQD
Sbjct: 63 FTVWDVGGQD 72
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,435,943
Number of Sequences: 369166
Number of extensions: 315423
Number of successful extensions: 1432
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 68,354,980
effective HSP length: 42
effective length of database: 60,596,110
effective search space used: 1696691080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)