Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_K23
(350 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38072|SCO2_YEAST SCO2 protein, mitochondrial precursor 28 5.0
sp|Q8K9S1|FLHB_BUCAP Flagellar biosynthetic protein flhB 28 5.0
sp|P47081|YJA3_YEAST Hypothetical 14.1 kDa protein in CYR1-... 28 6.5
>sp|P38072|SCO2_YEAST SCO2 protein, mitochondrial precursor
Length = 301
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 187 KYVCAKYNIYFHGINRTCPS-EHLVQSSFYFCI*DPFILFI 68
K VC KY +YF P+ ++LV S +F + DP FI
Sbjct: 219 KSVCKKYKVYFSTPRDVKPNQDYLVDHSIFFYLIDPEGQFI 259
>sp|Q8K9S1|FLHB_BUCAP Flagellar biosynthetic protein flhB
Length = 381
Score = 28.5 bits (62), Expect = 5.0
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Frame = +1
Query: 205 NFANLEISECWRKLNIVVFSFQISVKNFK---------CFCNYY*TLYIYFNKLLF 345
NFA L + +K FSFQI ++ FK C +Y L+IYF K+LF
Sbjct: 124 NFARLNLLHGLKKF----FSFQIFIELFKTTLKLFIISCISIFY--LWIYFYKILF 173
>sp|P47081|YJA3_YEAST Hypothetical 14.1 kDa protein in CYR1-OST1 intergenic region
Length = 118
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 132 HQNIWFKAPFTSAFKIPSFFLSSFATISASLELRVLLKIGEKQI 1
H ++F PF + + SF+LSSF I R + +I E+ I
Sbjct: 32 HPFLFFGLPFCATIVLGSFWLSSFTAIKYEQGDRKVQEINEEDI 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,726,835
Number of Sequences: 369166
Number of extensions: 572617
Number of successful extensions: 1315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)