Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_K06
(280 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 48 8e-06
sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (To... 44 2e-04
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 36 0.024
sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (... 35 0.070
sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-rela... 34 0.12
sp|Q9XTD6|NAS12_CAEEL Zinc metalloproteinase nas-12 precurs... 34 0.12
sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-rela... 33 0.16
sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion)... 33 0.20
sp|P22105|TENX_HUMAN Tenascin-X precursor (TN-X) (Hexabrach... 33 0.27
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 33 0.27
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 47.8 bits (112), Expect = 8e-06
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +1
Query: 43 ECVDSGSDCSGKSGEDCI---SPDVYENCKKTCHLCGDCDDSRPDCGYAKERGDCDKID- 210
EC D +DCS + S ++ C KTC+ C C+D+ C RG C K D
Sbjct: 106 ECTDLANDCSYNQNRCSVKEYSSLMHRLCPKTCNACNICEDANKMCPIWVPRGFCSKFDH 165
Query: 211 ---DRICRKTCAVC 243
+ C K+C +C
Sbjct: 166 DKVQKSCAKSCNIC 179
>sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (Toxocara excretory-secretory
antigen 26) (TES-26)
Length = 262
Score = 43.5 bits (101), Expect = 2e-04
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Frame = +1
Query: 16 LFIVVMCDDECVDSGSDCSGKSGEDCISP--DVYEN-CKKTCHLCGDCDDSRPDCGYAKE 186
LF+ +C+DS SDC+ +G P V +N C++TC+ C DC D +C A
Sbjct: 13 LFVSSGVAQQCMDSASDCAANAGSCFTRPVSQVLQNRCQRTCNTC-DCRDEANNC--AAS 69
Query: 187 RGDCDK------IDDRICRKTCAVC 243
C + DR C+KTC +C
Sbjct: 70 INLCQNPTFEPLVRDR-CQKTCGLC 93
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +1
Query: 43 ECVDSGSDCSGKSG---EDCISPDVYENCKKTCHLCGDC 150
+C D ++C+ P V + C+KTC LC C
Sbjct: 58 DCRDEANNCAASINLCQNPTFEPLVRDRCQKTCGLCAGC 96
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 36.2 bits (82), Expect = 0.024
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Frame = +1
Query: 43 ECVDSGSDCSGKSGEDCISPDVYENCKKTCHLCG--------DCDDSRPDCGYAKERGDC 198
+C S CS +P + + C KTC CG C DS +C ++ G C
Sbjct: 74 DCTQYTSLCSNAK----YTPLLQQFCPKTCGFCGGGSTAAPVQCVDSSTNCANWEKNGFC 129
Query: 199 DKI------DDRICRKTCAVCT*T 252
+ C KTC +CT T
Sbjct: 130 SSTFYDCANKKQYCAKTCKLCTTT 153
>sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C) (P230)
Length = 1746
Score = 34.7 bits (78), Expect = 0.070
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +1
Query: 28 VMCDDE---CVDSGSDCS-GKSGEDCISPDVYENCKKTCHLCGDCDDSRPDCGYAKERGD 195
V C +E CVD C G +GEDC P C CH G C ++ C D
Sbjct: 254 VPCSEEHGRCVDGRCVCQEGFAGEDCNEP----LCLHNCHGRGRCVENECVCDEGFTGED 309
Query: 196 CDKIDDRICRKTC 234
C ++ IC K C
Sbjct: 310 CGEL---ICPKDC 319
Score = 32.0 bits (71), Expect = 0.45
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 46 CVDSGSDCS-GKSGEDCISPDVYENCKKTCHLCGDCDDSRPDCGYAKERGDCDKI 207
CV+ C G++GEDC C CH G C R +C + + DC ++
Sbjct: 418 CVNGQCVCDEGRTGEDCSQL----RCPNDCHGRGRCVQGRCECEHGFQGYDCSEM 468
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 73 GKSGEDCISPDVYENCKKTCHLCGDCDDSRPDCGYAKERGDCDKI 207
G G +C P+ C CHL G C D + C DC ++
Sbjct: 179 GWKGPNCSEPE----CPSNCHLRGQCVDGQCVCNEGFTGEDCSQL 219
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 73 GKSGEDCISPDVYENCKKTCHLCGDCDDSRPDCGYAKERGDCDKI 207
G +G DC C CH G C D R +C E DC ++
Sbjct: 366 GFAGADCSE----RRCPSDCHNRGRCLDGRCECDDGFEGEDCGEL 406
>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B precursor
(Low-density lipoprotein receptor-related protein-deleted
in tumor) (LRP-DIT)
Length = 4599
Score = 33.9 bits (76), Expect = 0.12
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 34 CDDECVDSGSDCSGKSGEDCISPDVYENCKKTCHLCGD---CDDSRPDCGYAKERGDCDK 204
C DE + DC E+ SPD ++ CK T H CD+ PDC A + +CDK
Sbjct: 3422 CGDE--EDEKDCP----ENSCSPDYFQ-CKTTKHCISKLWVCDED-PDCADASDEANCDK 3473
Query: 205 IDDRICRKTC 234
KTC
Sbjct: 3474 -------KTC 3476
>sp|Q9XTD6|NAS12_CAEEL Zinc metalloproteinase nas-12 precursor (Nematode astacin 12)
Length = 384
Score = 33.9 bits (76), Expect = 0.12
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 25/69 (36%)
Frame = +1
Query: 112 ENCKKTCHLCG--------------------DCDDSRPDCGYAKERGDC-----DKIDDR 216
++C+KTC LC C+D P C G C D + +
Sbjct: 316 KSCQKTCRLCSYTRMIDEDDDLTPNTTVKSVKCEDKHPRCDIYSHNGFCTLPFYDDVRYQ 375
Query: 217 ICRKTCAVC 243
+C KTC +C
Sbjct: 376 LCAKTCNLC 384
>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B precursor
(Low-density lipoprotein receptor-related protein-deleted
in tumor) (LRP-DIT)
Length = 4599
Score = 33.5 bits (75), Expect = 0.16
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +1
Query: 40 DECVDSGS--DCSGKSGEDCISPDVYENCKKTCHLCGD---CDDSRPDCGYAKERGDCDK 204
D+C D DC E+ SPD ++ CK T H CD+ PDC A + +CDK
Sbjct: 3420 DDCGDEEDERDCP----ENSCSPDYFQ-CKTTKHCISKLWVCDED-PDCADASDEANCDK 3473
Query: 205 IDDRICRKTC 234
KTC
Sbjct: 3474 -------KTC 3476
>sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C)
Length = 2201
Score = 33.1 bits (74), Expect = 0.20
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +1
Query: 28 VMCDDECVDSGSDCSGK-------SGEDCISPDVYENCKKTCHLCGDCDDSRPDCGYAKE 186
++C ++C D G +G +GEDC P C CH G C++ + C
Sbjct: 313 LICPNDCFDRGRCINGTCYCEEGFTGEDCGKP----TCPHACHTQGRCEEGQCVCDEGFA 368
Query: 187 RGDCDK 204
DC +
Sbjct: 369 GLDCSE 374
Score = 28.1 bits (61), Expect = 6.6
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +1
Query: 46 CVDSGSDCS-GKSGEDCISPDVYENCKKTCHLCGDCDDSRPDCGYAKERGDCDKIDDRIC 222
CV+ C G +GEDC C CH G C + + C + DC D C
Sbjct: 418 CVNGQCVCDEGYTGEDCSQL----RCPNDCHSRGRCVEGKCVCEQGFKGYDC---SDMSC 470
Query: 223 RKTC 234
C
Sbjct: 471 PNDC 474
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 73 GKSGEDCISPDVYENCKKTCHLCGDCDDSRPDCGYAKERGDCDKI 207
G G +C P+ C CHL G C D + C DC ++
Sbjct: 179 GWKGPNCSEPE----CPGNCHLRGRCIDGQCICDDGFTGEDCSQL 219
>sp|P22105|TENX_HUMAN Tenascin-X precursor (TN-X) (Hexabrachion-like protein)
Length = 4289
Score = 32.7 bits (73), Expect = 0.27
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Frame = +1
Query: 46 CVDSGSDC-SGKSGEDCISPDVYENCKKTCHLCGDCDD---------SRPDCGYAKERGD 195
CVD C G +GEDC + C + C G C+D S DCG GD
Sbjct: 352 CVDGRCVCWPGYTGEDCST----RTCPRDCRGRGRCEDGECICDTGYSGDDCGVRSCPGD 407
Query: 196 CDK 204
C++
Sbjct: 408 CNQ 410
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 46 CVDSGSDC-SGKSGEDCISPDVYENCKKTCHLCGDCDDSRPDCGYAKERGDCDKIDDRIC 222
C D C +G SG+DC +C C+ G C+D R C DC R C
Sbjct: 383 CEDGECICDTGYSGDDC----GVRSCPGDCNQRGRCEDGRCVCWPGYTGTDC---GSRAC 435
Query: 223 RKTC 234
+ C
Sbjct: 436 PRDC 439
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Frame = +1
Query: 118 CKKTCHLC------GDCDDSRPDCGYAKERGDC--DKIDDRICRKTCAVC 243
CK +C +C G C D DC RG+C +K CR++C C
Sbjct: 608 CKVSCGVCRPNYVYGPCADYHYDCAAWARRGECLKNKWMPENCRRSCNTC 657
Score = 32.3 bits (72), Expect = 0.35
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Frame = +1
Query: 46 CVDSGSDCSGKSGE-DCISPDVYEN--CKKTCHLCG-------DCDDSRPDCGYAKERGD 195
C + C S + +C VY N CK +C C +C D +C G+
Sbjct: 462 CFNENECCGPWSAKGECQKNPVYMNVWCKASCRQCTPNYNINEECSDRHTNCAMWSRSGE 521
Query: 196 CDKID---DRICRKTCAVC 243
C+K CR +C C
Sbjct: 522 CNKNPLWMSENCRSSCQKC 540
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +1
Query: 37 DDECVDSGSDCS--GKSGEDCISPD-VYENCKKTCHLCG 144
++EC D ++C+ +SGE +P + ENC+ +C CG
Sbjct: 503 NEECSDRHTNCAMWSRSGECNKNPLWMSENCRSSCQKCG 541
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,202,060
Number of Sequences: 369166
Number of extensions: 511480
Number of successful extensions: 1864
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1855
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)