Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_J14
(675 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 179 6e-45
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 179 8e-45
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 178 1e-44
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 178 1e-44
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 178 1e-44
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 175 8e-44
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 174 2e-43
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 173 3e-43
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 170 4e-42
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 168 1e-41
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 179 bits (454), Expect = 6e-45
Identities = 100/133 (75%), Positives = 106/133 (79%)
Frame = +3
Query: 3 MVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGT 182
MVF ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 22 MVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTE 81
Query: 183 NYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 362
+ ++ KS IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG
Sbjct: 82 DISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 141
Query: 363 LYGLIVALILSTK 401
LYGLIVALILSTK
Sbjct: 142 LYGLIVALILSTK 154
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 179 bits (453), Expect = 8e-45
Identities = 99/133 (74%), Positives = 105/133 (78%)
Frame = +3
Query: 3 MVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGT 182
MVF A+GAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 23 MVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTD 82
Query: 183 NYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 362
T+ +S IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG
Sbjct: 83 GITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 142
Query: 363 LYGLIVALILSTK 401
LYGLIVALILSTK
Sbjct: 143 LYGLIVALILSTK 155
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 178 bits (451), Expect = 1e-44
Identities = 99/133 (74%), Positives = 105/133 (78%)
Frame = +3
Query: 3 MVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGT 182
MVF ALGAAYGTAKSGTGIA+M+VMRPE IMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 23 MVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLND 82
Query: 183 NYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 362
+ ++ KS IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG
Sbjct: 83 DISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 142
Query: 363 LYGLIVALILSTK 401
LYGLIVALILSTK
Sbjct: 143 LYGLIVALILSTK 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 178 bits (451), Expect = 1e-44
Identities = 98/133 (73%), Positives = 105/133 (78%)
Frame = +3
Query: 3 MVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGT 182
MVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 23 MVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLND 82
Query: 183 NYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 362
++ +S IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG
Sbjct: 83 GISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 142
Query: 363 LYGLIVALILSTK 401
LYGLIVALILSTK
Sbjct: 143 LYGLIVALILSTK 155
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 178 bits (451), Expect = 1e-44
Identities = 98/133 (73%), Positives = 105/133 (78%)
Frame = +3
Query: 3 MVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGT 182
MVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 23 MVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLND 82
Query: 183 NYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 362
++ +S IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG
Sbjct: 83 GISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLG 142
Query: 363 LYGLIVALILSTK 401
LYGLIVALILSTK
Sbjct: 143 LYGLIVALILSTK 155
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 175 bits (444), Expect = 8e-44
Identities = 98/136 (72%), Positives = 105/136 (77%), Gaps = 3/136 (2%)
Frame = +3
Query: 3 MVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI-- 176
++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 20 IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDA 79
Query: 177 -GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAE 353
NYT+ K H IGIVGDAGVRGTAQQPRLFVGMILILIFAE
Sbjct: 80 PSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAE 139
Query: 354 VLGLYGLIVALILSTK 401
VLGLYGLIVA+ L TK
Sbjct: 140 VLGLYGLIVAIYLYTK 155
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 174 bits (441), Expect = 2e-43
Identities = 97/136 (71%), Positives = 105/136 (77%), Gaps = 3/136 (2%)
Frame = +3
Query: 3 MVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI-- 176
++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 20 IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDS 79
Query: 177 -GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAE 353
NYT+ + H IGIVGDAGVRGTAQQPRLFVGMILILIFAE
Sbjct: 80 PSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAE 139
Query: 354 VLGLYGLIVALILSTK 401
VLGLYGLIVA+ L TK
Sbjct: 140 VLGLYGLIVAIYLYTK 155
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 173 bits (439), Expect = 3e-43
Identities = 97/135 (71%), Positives = 105/135 (77%), Gaps = 2/135 (1%)
Frame = +3
Query: 3 MVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIG- 179
++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 23 IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDT 82
Query: 180 -TNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 356
T Y++ K H IGIVGDAGVRGTAQQPRLFVGMILILIFAEV
Sbjct: 83 PTKYSLYKGFIHLGAGLAVGISGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 142
Query: 357 LGLYGLIVALILSTK 401
LGLYGLIVA+ L TK
Sbjct: 143 LGLYGLIVAIYLYTK 157
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 170 bits (430), Expect = 4e-42
Identities = 95/135 (70%), Positives = 105/135 (77%), Gaps = 2/135 (1%)
Frame = +3
Query: 3 MVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI-- 176
++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 25 IIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEE 84
Query: 177 GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 356
+ Y++ + H IGIVGDAGVRGTAQQPRLFVGMILILIFAEV
Sbjct: 85 PSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 144
Query: 357 LGLYGLIVALILSTK 401
LGLYGLIVA+ L TK
Sbjct: 145 LGLYGLIVAIYLYTK 159
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 168 bits (425), Expect = 1e-41
Identities = 94/135 (69%), Positives = 103/135 (76%), Gaps = 2/135 (1%)
Frame = +3
Query: 3 MVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI-- 176
MVF ALGAAYGTAKSG GI++M+VMRPELIMK IIPVVMAGIIAIYGLVVAVLIA ++
Sbjct: 22 MVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGKLDE 81
Query: 177 GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 356
YT+ + H IGIVGDAGVRGTAQQPRL+VGMILILIFAEV
Sbjct: 82 APTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEV 141
Query: 357 LGLYGLIVALILSTK 401
LGLYGLIVA+ L TK
Sbjct: 142 LGLYGLIVAIFLYTK 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,895,155
Number of Sequences: 369166
Number of extensions: 1051008
Number of successful extensions: 3296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3217
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)