Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_J02
(322 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precu... 125 2e-29
sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathe... 124 5e-29
sp|P25784|CYSP3_HOMAM Digestive cysteine proteinase 3 precu... 124 7e-29
sp|P13277|CYSP1_HOMAM Digestive cysteine proteinase 1 precu... 122 2e-28
sp|Q10991|CATL_SHEEP Cathepsin L [Contains: Cathepsin L hea... 122 3e-28
sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine protei... 121 6e-28
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 121 6e-28
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 120 1e-27
sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Catheps... 118 4e-27
sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathe... 118 4e-27
>sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precursor
Length = 323
Score = 125 bits (315), Expect = 2e-29
Identities = 54/84 (64%), Positives = 69/84 (82%)
Frame = +2
Query: 2 SVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQIGKKYWIVKNSWDVTWGES 181
SV IDA H+SFQ Y SG+Y E SCS + LDH VLAVGYG++ G+ +W+VKNSW +WG++
Sbjct: 240 SVTIDAAHSSFQFYSSGVYYEPSCSPSYLDHAVLAVGYGSEGGQDFWLVKNSWATSWGDA 299
Query: 182 GYIKMSKDKKNQCGIATMASYPLV 253
GYIKMS+++ N CGIAT+ASYPLV
Sbjct: 300 GYIKMSRNRNNNCGIATVASYPLV 323
>sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 339
Score = 124 bits (312), Expect = 5e-29
Identities = 56/85 (65%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 SVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGT-QIGKKYWIVKNSWDVTWGE 178
SVAIDA H SFQLY G+YNE C LDHGVL VGYGT + G YW+VKNSW TWGE
Sbjct: 255 SVAIDASHESFQLYSEGVYNEPECDEQNLDHGVLVVGYGTDESGMDYWLVKNSWGTTWGE 314
Query: 179 SGYIKMSKDKKNQCGIATMASYPLV 253
GYIKM++++ NQCGIAT +SYP V
Sbjct: 315 QGYIKMARNQNNQCGIATASSYPTV 339
>sp|P25784|CYSP3_HOMAM Digestive cysteine proteinase 3 precursor
Length = 321
Score = 124 bits (311), Expect = 7e-29
Identities = 55/84 (65%), Positives = 67/84 (79%)
Frame = +2
Query: 2 SVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQIGKKYWIVKNSWDVTWGES 181
SVAIDA H SFQ Y SG+Y E++CS T LDHGVLAVGYGT+ K YW+VKNSW +WG++
Sbjct: 238 SVAIDASHFSFQFYSSGVYYEQNCSPTFLDHGVLAVGYGTESTKDYWLVKNSWGSSWGDA 297
Query: 182 GYIKMSKDKKNQCGIATMASYPLV 253
GYIKMS+++ N CGIA+ SYP V
Sbjct: 298 GYIKMSRNRDNNCGIASEPSYPTV 321
>sp|P13277|CYSP1_HOMAM Digestive cysteine proteinase 1 precursor
Length = 322
Score = 122 bits (307), Expect = 2e-28
Identities = 54/84 (64%), Positives = 68/84 (80%)
Frame = +2
Query: 2 SVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQIGKKYWIVKNSWDVTWGES 181
SVAIDA H SFQ Y +G+Y E SCS++QLDH VLAVGYG++ G+ +W+VKNSW +WGES
Sbjct: 239 SVAIDASHRSFQSYYTGVYYEPSCSSSQLDHAVLAVGYGSEGGQDFWLVKNSWATSWGES 298
Query: 182 GYIKMSKDKKNQCGIATMASYPLV 253
GYIKM++++ N CGIAT A YP V
Sbjct: 299 GYIKMARNRNNNCGIATDACYPTV 322
>sp|Q10991|CATL_SHEEP Cathepsin L [Contains: Cathepsin L heavy chain; Cathepsin L light
chain]
Length = 217
Score = 122 bits (306), Expect = 3e-28
Identities = 56/85 (65%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 SVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQ-IGKKYWIVKNSWDVTWGE 178
SVAIDAGH+SFQ YKSGIY + CS+ LDHGVL VGYG + K+WIVKNSW WG
Sbjct: 133 SVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTNNKFWIVKNSWGPEWGN 192
Query: 179 SGYIKMSKDKKNQCGIATMASYPLV 253
GY+KM+KD+ N CGIAT ASYP V
Sbjct: 193 KGYVKMAKDQNNHCGIATAASYPTV 217
>sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine proteinase 1) [Contains: Cathepsin
L heavy chain; Cathepsin L light chain]
Length = 341
Score = 121 bits (303), Expect = 6e-28
Identities = 53/85 (62%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 SVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGT-QIGKKYWIVKNSWDVTWGE 178
SVAIDA H SFQ Y G+YNE C LDHGVL VG+GT + G+ YW+VKNSW TWG+
Sbjct: 257 SVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGD 316
Query: 179 SGYIKMSKDKKNQCGIATMASYPLV 253
G+IKM ++K+NQCGIA+ +SYPLV
Sbjct: 317 KGFIKMLRNKENQCGIASASSYPLV 341
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 121 bits (303), Expect = 6e-28
Identities = 57/87 (65%), Positives = 64/87 (73%), Gaps = 3/87 (3%)
Frame = +2
Query: 2 SVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYG---TQIGKKYWIVKNSWDVTW 172
SVAIDAGH SFQ YKSGIY + CS+ LDHGVL VGYG T K+WIVKNSW W
Sbjct: 247 SVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHGVLVVGYGFEGTDSNNKFWIVKNSWGPEW 306
Query: 173 GESGYIKMSKDKKNQCGIATMASYPLV 253
G +GY+KM+KD+ N CGIAT ASYP V
Sbjct: 307 GWNGYVKMAKDQNNHCGIATAASYPTV 333
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 120 bits (301), Expect = 1e-27
Identities = 56/88 (63%), Positives = 65/88 (73%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 SVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQ----IGKKYWIVKNSWDVT 169
SVA+DAGH+SFQ YKSGIY E CS+ LDHGVL VGYG + KYW+VKNSW
Sbjct: 247 SVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPE 306
Query: 170 WGESGYIKMSKDKKNQCGIATMASYPLV 253
WG +GY+K++KDK N CGIAT ASYP V
Sbjct: 307 WGSNGYVKIAKDKNNHCGIATAASYPNV 334
>sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 118 bits (296), Expect = 4e-27
Identities = 55/88 (62%), Positives = 65/88 (73%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 SVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQ----IGKKYWIVKNSWDVT 169
SVAIDAGH+SFQ YKSGIY + CS+ LDHGVL VGYG + K+WIVKNSW
Sbjct: 247 SVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNSSKFWIVKNSWGPE 306
Query: 170 WGESGYIKMSKDKKNQCGIATMASYPLV 253
WG +GY+KM+KD+ N CGI+T ASYP V
Sbjct: 307 WGWNGYVKMAKDQNNHCGISTAASYPTV 334
>sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 118 bits (296), Expect = 4e-27
Identities = 56/88 (63%), Positives = 63/88 (71%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 SVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQ----IGKKYWIVKNSWDVT 169
SVAIDAGH SFQ YKSGIY + CS LDHGVL VGYG + K+WIVKNSW
Sbjct: 247 SVAIDAGHTSFQFYKSGIYYDPDCSCKDLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGPE 306
Query: 170 WGESGYIKMSKDKKNQCGIATMASYPLV 253
WG +GY+KM+KD+ N CGIAT ASYP V
Sbjct: 307 WGWNGYVKMAKDQNNHCGIATAASYPTV 334
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,596,796
Number of Sequences: 369166
Number of extensions: 756593
Number of successful extensions: 2443
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2301
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)